assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	1	824102-824201	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	GATGGCATAGATAGAGTCGTCGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|128aa|up_8|NC_009831.1_814741_815125_+,NA	NA|84aa|up_9|NC_009831.1_814259_814511_-	pfam11212, DUF2999, Protein of unknown function (DUF2999)	NA|128aa|up_8|NC_009831.1_814741_815125_+	NA	NA|185aa|up_7|NC_009831.1_815281_815836_-	pfam10973, DUF2799, Protein of unknown function (DUF2799)	NA|363aa|up_6|NC_009831.1_816688_817777_+	PRK10717, PRK10717, cysteine synthase A; Provisional	NA|295aa|up_5|NC_009831.1_817847_818732_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|175aa|up_4|NC_009831.1_818867_819392_+	TIGR03645, glyox_marine, lactoylglutathione lyase family protein	NA|493aa|up_3|NC_009831.1_819463_820942_-	TIGR00775, CT857_hypothetical_protein, Na+/H+ antiporter, NhaD family	NA|164aa|up_2|NC_009831.1_821264_821756_+	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E	NA|298aa|up_1|NC_009831.1_821870_822764_-	pfam02253, PLA1, Phospholipase A1	NA|300aa|up_0|NC_009831.1_823040_823940_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|132aa|down_0|NC_009831.1_824830_825226_+	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC	NA|355aa|down_1|NC_009831.1_825384_826449_+	pfam04632, FUSC, Fusaric acid resistance protein family	NA|154aa|down_2|NC_009831.1_826649_827111_+	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|404aa|down_3|NC_009831.1_827788_829000_+	pfam05940, NnrS, NnrS protein	NA|465aa|down_4|NC_009831.1_829071_830466_+	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|360aa|down_5|NC_009831.1_830657_831737_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|253aa|down_6|NC_009831.1_832685_833444_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|225aa|down_7|NC_009831.1_833447_834122_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|405aa|down_8|NC_009831.1_834111_835326_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|249aa|down_9|NC_009831.1_835799_836546_+	pfam03502, Channel_Tsx, Nucleoside-specific channel-forming protein, Tsx
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	2	1811036-1811167	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	AGTCTATAACTCATGCTCAACATGATGAGGTGTGCGGT	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|258aa|up_3|NC_009831.1_1807413_1808187_-,NA|199aa|up_0|NC_009831.1_1810166_1810763_-,NA	NA|366aa|up_9|NC_009831.1_1800733_1801831_+	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs	NA|150aa|up_8|NC_009831.1_1801988_1802438_+	pfam04828, GFA, Glutathione-dependent formaldehyde-activating enzyme	NA|283aa|up_7|NC_009831.1_1802494_1803343_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|109aa|up_6|NC_009831.1_1803410_1803737_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|583aa|up_5|NC_009831.1_1804266_1806015_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|386aa|up_4|NC_009831.1_1806056_1807214_-	COG3835, CdaR, Sugar diacid utilization regulator [Transcription / Signal transduction mechanisms]	NA|258aa|up_3|NC_009831.1_1807413_1808187_-	NA	NA|324aa|up_2|NC_009831.1_1808365_1809337_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|215aa|up_1|NC_009831.1_1809478_1810123_-	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|199aa|up_0|NC_009831.1_1810166_1810763_-	NA	NA|334aa|down_0|NC_009831.1_1813252_1814254_-	TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family	NA|661aa|down_1|NC_009831.1_1814333_1816316_-	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|739aa|down_2|NC_009831.1_1816750_1818967_-	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|723aa|down_3|NC_009831.1_1819447_1821616_-	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|646aa|down_4|NC_009831.1_1821681_1823619_-	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|712aa|down_5|NC_009831.1_1823756_1825892_-	pfam11854, MtrB_PioB, Putative outer membrane beta-barrel porin, MtrB/PioB	NA|321aa|down_6|NC_009831.1_1825907_1826870_-	TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family	NA|85aa|down_7|NC_009831.1_1827300_1827555_+	pfam04023, FeoA, FeoA domain	NA|765aa|down_8|NC_009831.1_1827547_1829842_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|557aa|down_9|NC_009831.1_1830004_1831675_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	3	2570852-2570927	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	TTTGTGTCTGGAACACTTATGTCTA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA,NA	NA|406aa|up_9|NC_009831.1_2558972_2560190_+	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|537aa|up_8|NC_009831.1_2560367_2561978_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|167aa|up_7|NC_009831.1_2562299_2562800_+	COG4628, COG4628, Uncharacterized conserved protein [Function unknown]	NA|459aa|up_6|NC_009831.1_2564556_2565933_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|205aa|up_5|NC_009831.1_2565965_2566580_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|67aa|up_4|NC_009831.1_2566621_2566822_-	pfam14255, Cys_rich_CPXG, Cysteine-rich CPXCG	NA|643aa|up_3|NC_009831.1_2567678_2569607_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|181aa|up_2|NC_009831.1_2569610_2570153_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|65aa|up_1|NC_009831.1_2570236_2570431_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|120aa|up_0|NC_009831.1_2570449_2570809_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|317aa|down_0|NC_009831.1_2571082_2572033_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|372aa|down_1|NC_009831.1_2572168_2573284_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|168aa|down_2|NC_009831.1_2573464_2573968_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|838aa|down_3|NC_009831.1_2574151_2576665_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|209aa|down_4|NC_009831.1_2576779_2577406_+	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|444aa|down_5|NC_009831.1_2577415_2578747_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|125aa|down_6|NC_009831.1_2578739_2579114_+	PRK14197, PRK14197, fluoride efflux transporter CrcB	NA|429aa|down_7|NC_009831.1_2579132_2580419_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|112aa|down_8|NC_009831.1_2580853_2581189_-	TIGR03342, dsrC_tusE_dsvC, sulfur relay protein, TusE/DsrC/DsvC family	NA|94aa|down_9|NC_009831.1_2581299_2581581_-	pfam04077, DsrH, DsrH like protein
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	4	2770224-2770324	4	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	TGCCTATCTTCACATCTAACCTTCGCGGCT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|82aa|up_4|NC_009831.1_2762422_2762668_-,NA|58aa|down_3|NC_009831.1_2774407_2774581_+	NA|348aa|up_9|NC_009831.1_2755702_2756746_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|449aa|up_8|NC_009831.1_2756823_2758170_-	pfam04205, FMN_bind, FMN-binding domain	NA|398aa|up_7|NC_009831.1_2758441_2759635_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|582aa|up_6|NC_009831.1_2759974_2761720_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|200aa|up_5|NC_009831.1_2761712_2762312_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|82aa|up_4|NC_009831.1_2762422_2762668_-	NA	NA|493aa|up_3|NC_009831.1_2762916_2764395_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|1056aa|up_2|NC_009831.1_2764421_2767589_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|400aa|up_1|NC_009831.1_2767588_2768788_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|248aa|up_0|NC_009831.1_2769240_2769984_-	COG3148, COG3148, Uncharacterized conserved protein [Function unknown]	NA|409aa|down_0|NC_009831.1_2770647_2771874_+	PRK11652, emrD, multidrug transporter EmrD	NA|438aa|down_1|NC_009831.1_2772390_2773704_-	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	NA|111aa|down_2|NC_009831.1_2773715_2774048_-	pfam08921, DUF1904, Domain of unknown function (DUF1904)	NA|58aa|down_3|NC_009831.1_2774407_2774581_+	NA	NA|486aa|down_4|NC_009831.1_2774782_2776240_+	PRK11113, PRK11113, D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional	NA|586aa|down_5|NC_009831.1_2776423_2778181_-	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|181aa|down_6|NC_009831.1_2778420_2778963_-	pfam09831, DUF2058, Uncharacterized protein conserved in bacteria (DUF2058)	NA|235aa|down_7|NC_009831.1_2779073_2779778_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|387aa|down_8|NC_009831.1_2779882_2781043_-	PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional	NA|97aa|down_9|NC_009831.1_2781044_2781335_-	COG3771, COG3771, Predicted membrane protein [Function unknown]
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	5	3434165-3434265	5	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,RT,DinG,WYL	Unclear	CCTACTTCAATACATAATTGCGTCTCAACAGCTTC	35	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,DEDDh,RT,DinG,WYL	NA|202aa|up_8|NC_009831.1_3422532_3423138_+,NA|258aa|up_0|NC_009831.1_3433282_3434056_+,NA	NA|411aa|up_9|NC_009831.1_3421202_3422435_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|202aa|up_8|NC_009831.1_3422532_3423138_+	NA	cas3|1158aa|up_7|NC_009831.1_3423274_3426748_+	PRK10689, PRK10689, transcription-repair coupling factor; Provisional	NA|316aa|up_6|NC_009831.1_3426749_3427697_+	pfam10972, CsiV, Peptidoglycan-binding protein, CsiV	NA|92aa|up_5|NC_009831.1_3427827_3428103_-	PRK14429, PRK14429, acylphosphatase; Provisional	NA|180aa|up_4|NC_009831.1_3428621_3429161_-	PRK04940, PRK04940, hypothetical protein; Provisional	NA|338aa|up_3|NC_009831.1_3429253_3430267_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|459aa|up_2|NC_009831.1_3430587_3431964_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|325aa|up_1|NC_009831.1_3432084_3433059_-	PRK12681, cysB, HTH-type transcriptional regulator CysB	NA|258aa|up_0|NC_009831.1_3433282_3434056_+	NA	NA|890aa|down_0|NC_009831.1_3434353_3437023_-	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|446aa|down_1|NC_009831.1_3437552_3438890_+	PRK13281, PRK13281, N-succinylarginine dihydrolase	NA|839aa|down_2|NC_009831.1_3438968_3441485_-	pfam02369, Big_1, Bacterial Ig-like domain (group 1)	NA|437aa|down_3|NC_009831.1_3441701_3443012_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|435aa|down_4|NC_009831.1_3443160_3444465_-	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|332aa|down_5|NC_009831.1_3444641_3445637_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|215aa|down_6|NC_009831.1_3445827_3446472_-	PRK00279, adk, adenylate kinase; Reviewed	NA|282aa|down_7|NC_009831.1_3446670_3447516_-	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]	NA|639aa|down_8|NC_009831.1_3447639_3449556_-	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|200aa|down_9|NC_009831.1_3449752_3450352_-	PRK00076, recR, recombination protein RecR; Reviewed
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	6	4447498-4447580	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	GTTAATATTTACTCTGACCCCATATATTC	29	1	1	4447527-4447551	NC_009831.1_4447292-4447316	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|304aa|up_9|NC_009831.1_4435447_4436359_-,NA|79aa|down_1|NC_009831.1_4449441_4449678_-,NA|348aa|down_9|NC_009831.1_4461512_4462556_+	NA|304aa|up_9|NC_009831.1_4435447_4436359_-	NA	NA|212aa|up_8|NC_009831.1_4436361_4436997_-	COG2129, COG2129, Predicted phosphoesterases, related to the Icc protein [General function prediction only]	NA|208aa|up_7|NC_009831.1_4437394_4438018_+	pfam13521, AAA_28, AAA domain	NA|194aa|up_6|NC_009831.1_4438098_4438680_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|351aa|up_5|NC_009831.1_4438821_4439874_+	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	NA|443aa|up_4|NC_009831.1_4440034_4441363_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|415aa|up_3|NC_009831.1_4441835_4443080_-	pfam10087, DUF2325, Uncharacterized protein conserved in bacteria (DUF2325)	NA|681aa|up_2|NC_009831.1_4443520_4445563_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|144aa|up_1|NC_009831.1_4445691_4446123_-	pfam12614, RRF_GI, Ribosome recycling factor	NA|284aa|up_0|NC_009831.1_4446254_4447106_-	pfam08668, HDOD, HDOD domain	NA|484aa|down_0|NC_009831.1_4447918_4449370_+	pfam11840, DUF3360, Protein of unknown function (DUF3360)	NA|79aa|down_1|NC_009831.1_4449441_4449678_-	NA	NA|358aa|down_2|NC_009831.1_4449923_4450997_-	pfam11281, DUF3083, Protein of unknown function (DUF3083)	NA|518aa|down_3|NC_009831.1_4451667_4453221_-	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase	NA|244aa|down_4|NC_009831.1_4454309_4455041_+	cd17767, UP_EcUdp-like, uridine phosphorylases similar to Escherichia coli Udp and related phosphorylases	NA|83aa|down_5|NC_009831.1_4455238_4455487_-	pfam11730, DUF3297, Protein of unknown function (DUF3297)	NA|369aa|down_6|NC_009831.1_4455767_4456874_-	TIGR01883, Uncharacterized_protein_YqjE, peptidase T-like protein	NA|146aa|down_7|NC_009831.1_4457153_4457591_+	COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism]	NA|1051aa|down_8|NC_009831.1_4458250_4461403_+	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases	NA|348aa|down_9|NC_009831.1_4461512_4462556_+	NA
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	7	4484888-4485002	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	AACATTCGCGGCTAAAGCCACTCCTACAT	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|134aa|up_6|NC_009831.1_4474753_4475155_-,NA|83aa|down_1|NC_009831.1_4485950_4486199_-,NA|94aa|down_3|NC_009831.1_4487786_4488068_-	NA|567aa|up_9|NC_009831.1_4470208_4471909_+	PRK12668, PRK12668, Na(+)/H(+) antiporter subunit D	NA|229aa|up_8|NC_009831.1_4472035_4472722_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|550aa|up_7|NC_009831.1_4472906_4474556_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|134aa|up_6|NC_009831.1_4474753_4475155_-	NA	NA|963aa|up_5|NC_009831.1_4476115_4479004_-	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|130aa|up_4|NC_009831.1_4479157_4479547_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|365aa|up_3|NC_009831.1_4479955_4481050_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|405aa|up_2|NC_009831.1_4481363_4482578_-	PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated	NA|416aa|up_1|NC_009831.1_4482634_4483882_-	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	NA|189aa|up_0|NC_009831.1_4484017_4484584_-	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|103aa|down_0|NC_009831.1_4485165_4485474_+	PRK10972, PRK10972, cell division protein ZapA	NA|83aa|down_1|NC_009831.1_4485950_4486199_-	NA	NA|221aa|down_2|NC_009831.1_4487016_4487679_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|94aa|down_3|NC_009831.1_4487786_4488068_-	NA	NA|239aa|down_4|NC_009831.1_4488443_4489160_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|225aa|down_5|NC_009831.1_4489240_4489915_+	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional	NA|173aa|down_6|NC_009831.1_4489963_4490482_+	pfam04170, NlpE, NlpE N-terminal domain	NA|223aa|down_7|NC_009831.1_4490465_4491134_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|187aa|down_8|NC_009831.1_4491368_4491929_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|182aa|down_9|NC_009831.1_4492019_4492565_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	8	4597368-4597477	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	AGATTCGCGGCTAAAGCCGCTCCTAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|69aa|up_6|NC_009831.1_4588083_4588290_-,NA|95aa|up_4|NC_009831.1_4591481_4591766_-,NA|163aa|down_6|NC_009831.1_4605632_4606121_-,NA|68aa|down_7|NC_009831.1_4606493_4606697_-,NA|304aa|down_8|NC_009831.1_4607040_4607952_-	NA|220aa|up_9|NC_009831.1_4585577_4586237_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|122aa|up_8|NC_009831.1_4586598_4586964_-	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|218aa|up_7|NC_009831.1_4587334_4587988_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|69aa|up_6|NC_009831.1_4588083_4588290_-	NA	NA|962aa|up_5|NC_009831.1_4588363_4591249_-	TIGR01931, Sulfite_reductase_flavoprotein_alpha-component, sulfite reductase [NADPH] flavoprotein, alpha-component	NA|95aa|up_4|NC_009831.1_4591481_4591766_-	NA	NA|469aa|up_3|NC_009831.1_4591768_4593175_-	TIGR02486, putative_reductive_dehalogenase_partial, reductive dehalogenase	NA|324aa|up_2|NC_009831.1_4593261_4594233_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|294aa|up_1|NC_009831.1_4594647_4595529_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|494aa|up_0|NC_009831.1_4595761_4597243_-	PRK00029, PRK00029, YdiU family protein	NA|353aa|down_0|NC_009831.1_4597643_4598702_+	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|86aa|down_1|NC_009831.1_4598892_4599150_+	pfam03889, DUF331, Domain of unknown function	NA|312aa|down_2|NC_009831.1_4599631_4600567_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|443aa|down_3|NC_009831.1_4600868_4602197_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|332aa|down_4|NC_009831.1_4602284_4603280_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|590aa|down_5|NC_009831.1_4603410_4605180_-	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|163aa|down_6|NC_009831.1_4605632_4606121_-	NA	NA|68aa|down_7|NC_009831.1_4606493_4606697_-	NA	NA|304aa|down_8|NC_009831.1_4607040_4607952_-	NA	NA|359aa|down_9|NC_009831.1_4607973_4609050_-	cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	9	4627929-4628030	9	CRISPRCasFinder	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	TTCGCGGCTAAAGCCACTCCTACAT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|179aa|up_7|NC_009831.1_4618350_4618887_-,NA|116aa|down_2|NC_009831.1_4631285_4631633_+,NA|127aa|down_3|NC_009831.1_4631736_4632117_+,NA|583aa|down_7|NC_009831.1_4634238_4635987_-	NA|221aa|up_9|NC_009831.1_4616473_4617136_+	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold	NA|350aa|up_8|NC_009831.1_4617224_4618274_-	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|179aa|up_7|NC_009831.1_4618350_4618887_-	NA	NA|174aa|up_6|NC_009831.1_4618985_4619507_-	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|538aa|up_5|NC_009831.1_4619748_4621362_-	pfam06537, DHOR, Di-haem oxidoreductase, putative peroxidase	NA|385aa|up_4|NC_009831.1_4621515_4622670_-	cd14658, Imelysin-like_IrpA, Imelysin-like domain in iron-regulated protein A	NA|466aa|up_3|NC_009831.1_4622731_4624129_-	pfam11180, DUF2968, Protein of unknown function (DUF2968)	NA|287aa|up_2|NC_009831.1_4624606_4625467_-	COG1262, COG1262, Uncharacterized conserved protein [Function unknown]	NA|397aa|up_1|NC_009831.1_4625709_4626900_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|278aa|up_0|NC_009831.1_4626960_4627794_+	TIGR03899, hypothetical_protein, TIGR03899 family protein	NA|270aa|down_0|NC_009831.1_4628119_4628929_-	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|515aa|down_1|NC_009831.1_4629599_4631144_+	cd07563, Peptidase_S41_IRBP, Interphotoreceptor retinoid-binding protein; serine protease family S41	NA|116aa|down_2|NC_009831.1_4631285_4631633_+	NA	NA|127aa|down_3|NC_009831.1_4631736_4632117_+	NA	NA|176aa|down_4|NC_009831.1_4632180_4632708_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|285aa|down_5|NC_009831.1_4632759_4633614_-	COG1718, RIO1, Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]	NA|138aa|down_6|NC_009831.1_4633740_4634154_-	pfam11215, DUF3010, Protein of unknown function (DUF3010)	NA|583aa|down_7|NC_009831.1_4634238_4635987_-	NA	NA|256aa|down_8|NC_009831.1_4636909_4637677_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|570aa|down_9|NC_009831.1_4637669_4639379_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000018025.1_ASM1802v1	NC_009831	Shewanella sediminis HAW-EB3, complete sequence	10	5193725-5193953	1	PILER-CR	no		csa3,cas3,DEDDh,RT,DinG,WYL	Orphan	ACCCAACCTCTAGACCAACCACCAGCCATTCTACCTCCTACTC	43	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,RT,DinG,WYL	NA|82aa|up_7|NC_009831.1_5186591_5186837_-,NA|87aa|down_4|NC_009831.1_5197786_5198047_-	NA|134aa|up_9|NC_009831.1_5184311_5184713_-	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]	NA|407aa|up_8|NC_009831.1_5185225_5186446_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|82aa|up_7|NC_009831.1_5186591_5186837_-	NA	NA|472aa|up_6|NC_009831.1_5186880_5188296_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|243aa|up_5|NC_009831.1_5188428_5189157_+	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|238aa|up_4|NC_009831.1_5189254_5189968_+	cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs	NA|175aa|up_3|NC_009831.1_5189848_5190373_-	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|109aa|up_2|NC_009831.1_5190526_5190853_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|280aa|up_1|NC_009831.1_5191178_5192018_-	PLN02442, PLN02442, S-formylglutathione hydrolase	NA|372aa|up_0|NC_009831.1_5192112_5193228_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|116aa|down_0|NC_009831.1_5193961_5194309_-	pfam06146, PsiE, Phosphate-starvation-inducible E	NA|190aa|down_1|NC_009831.1_5194772_5195342_-	PRK05417, PRK05417, glutathione-dependent formaldehyde-activating enzyme; Provisional	NA|384aa|down_2|NC_009831.1_5195409_5196561_-	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|290aa|down_3|NC_009831.1_5196890_5197760_+	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain	NA|87aa|down_4|NC_009831.1_5197786_5198047_-	NA	NA|403aa|down_5|NC_009831.1_5198441_5199650_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|335aa|down_6|NC_009831.1_5200198_5201203_+	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold	NA|300aa|down_7|NC_009831.1_5201289_5202189_+	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|420aa|down_8|NC_009831.1_5202181_5203441_+	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|405aa|down_9|NC_009831.1_5203440_5204655_+	pfam07396, Porin_O_P, Phosphate-selective porin O and P
