assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000018285.1_ASM1828v1	NC_009901	Shewanella pealeana ATCC 700345, complete sequence	1	313652-313745	1	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG	Orphan	CAAAGGTAGAGAACCAAAGGTAAAGCAG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG	NA|216aa|up_6|NC_009901.1_304613_305261_-,NA|153aa|up_4|NC_009901.1_306152_306611_-,NA|140aa|up_3|NC_009901.1_306835_307255_+,NA|195aa|down_2|NC_009901.1_315350_315935_+,NA|302aa|down_5|NC_009901.1_319052_319958_-,NA|146aa|down_7|NC_009901.1_322930_323368_+,NA|316aa|down_9|NC_009901.1_324685_325633_-	NA|377aa|up_9|NC_009901.1_301817_302948_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|280aa|up_8|NC_009901.1_303076_303916_+	PLN02442, PLN02442, S-formylglutathione hydrolase	NA|109aa|up_7|NC_009901.1_304144_304471_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|216aa|up_6|NC_009901.1_304613_305261_-	NA	NA|232aa|up_5|NC_009901.1_305321_306017_-	pfam13795, HupE_UreJ_2, HupE / UreJ protein	NA|153aa|up_4|NC_009901.1_306152_306611_-	NA	NA|140aa|up_3|NC_009901.1_306835_307255_+	NA	NA|549aa|up_2|NC_009901.1_307432_309079_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|407aa|up_1|NC_009901.1_309272_310493_-	pfam06738, ThrE, Putative threonine/serine exporter	NA|133aa|up_0|NC_009901.1_310707_311106_+	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]	NA|114aa|down_0|NC_009901.1_313851_314193_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|310aa|down_1|NC_009901.1_314231_315161_-	TIGR02207, DDG_protein	NA|195aa|down_2|NC_009901.1_315350_315935_+	NA	NA|189aa|down_3|NC_009901.1_316109_316676_-	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|687aa|down_4|NC_009901.1_316834_318895_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|302aa|down_5|NC_009901.1_319052_319958_-	NA	NA|886aa|down_6|NC_009901.1_320107_322765_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|146aa|down_7|NC_009901.1_322930_323368_+	NA	NA|346aa|down_8|NC_009901.1_323370_324408_+	pfam13609, Porin_4, Gram-negative porin	NA|316aa|down_9|NC_009901.1_324685_325633_-	NA
GCF_000018285.1_ASM1828v1	NC_009901	Shewanella pealeana ATCC 700345, complete sequence	2	1389932-1390024	2	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG	Orphan	TTTATTAGCACAGAAACCCTAAGTTTGC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG	NA|259aa|up_6|NC_009901.1_1379728_1380505_-,NA|70aa|up_3|NC_009901.1_1384242_1384452_-,NA|121aa|up_1|NC_009901.1_1387837_1388200_-,NA|63aa|down_3|NC_009901.1_1396087_1396276_-	NA|275aa|up_9|NC_009901.1_1376317_1377142_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|213aa|up_8|NC_009901.1_1377215_1377854_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|339aa|up_7|NC_009901.1_1378188_1379205_+	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|259aa|up_6|NC_009901.1_1379728_1380505_-	NA	NA|536aa|up_5|NC_009901.1_1380743_1382351_-	smart00098, alkPPc, Alkaline phosphatase homologues	NA|502aa|up_4|NC_009901.1_1382440_1383946_-	smart00098, alkPPc, Alkaline phosphatase homologues	NA|70aa|up_3|NC_009901.1_1384242_1384452_-	NA	NA|434aa|up_2|NC_009901.1_1386126_1387428_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|121aa|up_1|NC_009901.1_1387837_1388200_-	NA	NA|385aa|up_0|NC_009901.1_1388658_1389813_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1044aa|down_0|NC_009901.1_1390069_1393201_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|383aa|down_1|NC_009901.1_1393695_1394844_-	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|158aa|down_2|NC_009901.1_1395485_1395959_-	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|63aa|down_3|NC_009901.1_1396087_1396276_-	NA	NA|1037aa|down_4|NC_009901.1_1396441_1399552_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|371aa|down_5|NC_009901.1_1399552_1400665_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|361aa|down_6|NC_009901.1_1401103_1402186_-	cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain	NA|364aa|down_7|NC_009901.1_1402274_1403366_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|556aa|down_8|NC_009901.1_1403682_1405350_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|419aa|down_9|NC_009901.1_1405627_1406884_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed
GCF_000018285.1_ASM1828v1	NC_009901	Shewanella pealeana ATCC 700345, complete sequence	3	1630285-1630390	3	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG	Orphan	CTAGGAAAAGCACAAGAAAAGACAAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG	NA,NA	NA|371aa|up_9|NC_009901.1_1620119_1621232_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|205aa|up_8|NC_009901.1_1621421_1622036_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|192aa|up_7|NC_009901.1_1622098_1622674_-	pfam16036, Chalcone_3, Chalcone isomerase-like	NA|160aa|up_6|NC_009901.1_1622705_1623185_-	pfam11163, DUF2947, Protein of unknown function (DUF2947)	NA|251aa|up_5|NC_009901.1_1623484_1624237_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|418aa|up_4|NC_009901.1_1624589_1625843_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|277aa|up_3|NC_009901.1_1625950_1626781_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|390aa|up_2|NC_009901.1_1627614_1628784_-	pfam16539, FlgT_M, Flagellar assembly protein T, middle domain	NA|210aa|up_1|NC_009901.1_1629091_1629721_+	pfam17680, FlgO, FlgO protein	NA|149aa|up_0|NC_009901.1_1629721_1630168_+	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown]	NA|142aa|down_0|NC_009901.1_1630555_1630981_-	pfam05130, FlgN, FlgN protein	NA|106aa|down_1|NC_009901.1_1631077_1631395_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|258aa|down_2|NC_009901.1_1631492_1632266_-	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|307aa|down_3|NC_009901.1_1632476_1633397_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|278aa|down_4|NC_009901.1_1633536_1634370_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|133aa|down_5|NC_009901.1_1634535_1634934_+	PRK12625, flgB, flagellar basal body rod protein FlgB; Provisional	NA|139aa|down_6|NC_009901.1_1634936_1635353_+	PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional	NA|271aa|down_7|NC_009901.1_1635378_1636191_+	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|454aa|down_8|NC_009901.1_1636276_1637638_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|248aa|down_9|NC_009901.1_1638294_1639038_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed
GCF_000018285.1_ASM1828v1	NC_009901	Shewanella pealeana ATCC 700345, complete sequence	4	4261648-4261796	4	CRISPRCasFinder	no	cas3	csa3,cas3,WYL,DEDDh,DinG	Unclear	CACAGCGTAAGCCTAAGAGCCGCTGGTAACTAATGATATTGCCGCTGCAGTCTA	54	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,WYL,DEDDh,DinG	NA|110aa|up_4|NC_009901.1_4255954_4256284_+,NA	NA|300aa|up_9|NC_009901.1_4251226_4252126_+	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|576aa|up_8|NC_009901.1_4252241_4253969_+	PRK03612, PRK03612, polyamine aminopropyltransferase	NA|138aa|up_7|NC_009901.1_4254060_4254474_+	pfam09938, DUF2170, Uncharacterized protein conserved in bacteria (DUF2170)	NA|230aa|up_6|NC_009901.1_4254486_4255176_+	pfam04012, PspA_IM30, PspA/IM30 family	NA|217aa|up_5|NC_009901.1_4255187_4255838_+	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|110aa|up_4|NC_009901.1_4255954_4256284_+	NA	NA|266aa|up_3|NC_009901.1_4256342_4257140_+	pfam07885, Ion_trans_2, Ion channel	NA|496aa|up_2|NC_009901.1_4257244_4258732_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|227aa|up_1|NC_009901.1_4258964_4259645_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|423aa|up_0|NC_009901.1_4259669_4260938_+	pfam01384, PHO4, Phosphate transporter family	NA|1065aa|down_0|NC_009901.1_4262330_4265525_+	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|627aa|down_1|NC_009901.1_4265878_4267759_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|627aa|down_2|NC_009901.1_4268075_4269956_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|580aa|down_3|NC_009901.1_4270022_4271762_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|607aa|down_4|NC_009901.1_4271761_4273582_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|114aa|down_5|NC_009901.1_4273936_4274278_-	pfam12286, DUF3622, Protein of unknown function (DUF3622)	NA|67aa|down_6|NC_009901.1_4274482_4274683_-	pfam12088, DUF3565, Protein of unknown function (DUF3565)	NA|512aa|down_7|NC_009901.1_4275089_4276625_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	cas3|470aa|down_8|NC_009901.1_4276819_4278229_-	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|232aa|down_9|NC_009901.1_4278570_4279266_-	pfam11769, DUF3313, Protein of unknown function (DUF3313)
GCF_000018285.1_ASM1828v1	NC_009901	Shewanella pealeana ATCC 700345, complete sequence	5	4423412-4423566	5	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG	Orphan	AGTTAACCCCGTTCGATTACCTGATAGAAGATAGCGACTCATTGATGACAAC	52	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG	NA|72aa|up_7|NC_009901.1_4414425_4414641_+,NA|108aa|down_3|NC_009901.1_4427212_4427536_-	NA|264aa|up_9|NC_009901.1_4412231_4413023_-	PRK03537, PRK03537, molybdate ABC transporter substrate-binding protein	NA|225aa|up_8|NC_009901.1_4413298_4413973_-	PRK10510, PRK10510, OmpA family lipoprotein	NA|72aa|up_7|NC_009901.1_4414425_4414641_+	NA	NA|512aa|up_6|NC_009901.1_4414840_4416376_-	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	NA|151aa|up_5|NC_009901.1_4416486_4416939_-	pfam04138, GtrA, GtrA-like protein	NA|477aa|up_4|NC_009901.1_4416923_4418354_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|346aa|up_3|NC_009901.1_4418362_4419400_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|227aa|up_2|NC_009901.1_4419529_4420210_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|450aa|up_1|NC_009901.1_4420212_4421562_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|192aa|up_0|NC_009901.1_4421587_4422163_-	pfam02089, Palm_thioest, Palmitoyl protein thioesterase	NA|390aa|down_0|NC_009901.1_4424024_4425194_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|379aa|down_1|NC_009901.1_4425442_4426579_+	PRK03522, rumB, 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA|70aa|down_2|NC_009901.1_4426883_4427093_+	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism]	NA|108aa|down_3|NC_009901.1_4427212_4427536_-	NA	NA|183aa|down_4|NC_009901.1_4427643_4428192_-	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme	NA|97aa|down_5|NC_009901.1_4428194_4428485_-	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only]	NA|199aa|down_6|NC_009901.1_4428727_4429324_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|236aa|down_7|NC_009901.1_4429307_4430015_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|277aa|down_8|NC_009901.1_4430008_4430839_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|326aa|down_9|NC_009901.1_4430831_4431809_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_000018285.1_ASM1828v1	NC_009901	Shewanella pealeana ATCC 700345, complete sequence	6	4922668-4922802	6	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,DinG	Orphan	CGAGCTTGCGAGTGCCCTATCTTATATGTTGGCGTCCTCGCAGGTGC	47	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,DinG	NA|380aa|up_7|NC_009901.1_4911515_4912655_+,NA|420aa|up_5|NC_009901.1_4914602_4915862_-,NA|86aa|up_0|NC_009901.1_4922093_4922351_-,NA	NA|96aa|up_9|NC_009901.1_4909374_4909662_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|453aa|up_8|NC_009901.1_4909937_4911296_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|380aa|up_7|NC_009901.1_4911515_4912655_+	NA	NA|473aa|up_6|NC_009901.1_4913064_4914483_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|420aa|up_5|NC_009901.1_4914602_4915862_-	NA	NA|254aa|up_4|NC_009901.1_4916114_4916876_-	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase	NA|764aa|up_3|NC_009901.1_4917159_4919451_+	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family	NA|412aa|up_2|NC_009901.1_4919777_4921013_+	smart00862, Trans_reg_C, Transcriptional regulatory protein, C terminal	NA|281aa|up_1|NC_009901.1_4921069_4921912_+	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|86aa|up_0|NC_009901.1_4922093_4922351_-	NA	NA|293aa|down_0|NC_009901.1_4922888_4923767_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|466aa|down_1|NC_009901.1_4924016_4925414_+	PRK09575, vmrA, MATE family efflux transporter	NA|222aa|down_2|NC_009901.1_4925573_4926239_-	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|341aa|down_3|NC_009901.1_4926313_4927336_-	pfam11335, DUF3137, Protein of unknown function (DUF3137)	NA|190aa|down_4|NC_009901.1_4927423_4927993_-	pfam04011, LemA, LemA family	NA|515aa|down_5|NC_009901.1_4929159_4930704_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|532aa|down_6|NC_009901.1_4931262_4932858_+	pfam03806, ABG_transport, AbgT putative transporter family	NA|186aa|down_7|NC_009901.1_4933158_4933716_+	PRK09453, PRK09453, phosphodiesterase; Provisional	NA|1053aa|down_8|NC_009901.1_4934083_4937242_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|384aa|down_9|NC_009901.1_4937251_4938403_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA
