assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	1	384834-385011	1	PILER-CR	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ATCACAAATAGTACATTCTCGAACAACGCAGCAACCACCAGCGGCGG	47	0	0	NA	NA	NA	2	2	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|73aa|up_8|NC_010175.1_375154_375373_-,NA|50aa|up_5|NC_010175.1_378315_378465_+,NA|329aa|up_0|NC_010175.1_383183_384170_+,NA|604aa|down_0|NC_010175.1_388244_390056_+,NA|97aa|down_1|NC_010175.1_390066_390357_+,NA|87aa|down_6|NC_010175.1_395368_395629_-	NA|504aa|up_9|NC_010175.1_373383_374895_-	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	NA|73aa|up_8|NC_010175.1_375154_375373_-	NA	NA|79aa|up_7|NC_010175.1_375520_375757_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|508aa|up_6|NC_010175.1_375922_377446_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|50aa|up_5|NC_010175.1_378315_378465_+	NA	NA|347aa|up_4|NC_010175.1_378518_379559_-	cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants	NA|477aa|up_3|NC_010175.1_379921_381352_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|165aa|up_2|NC_010175.1_381514_382009_+	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|303aa|up_1|NC_010175.1_382246_383155_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|329aa|up_0|NC_010175.1_383183_384170_+	NA	NA|604aa|down_0|NC_010175.1_388244_390056_+	NA	NA|97aa|down_1|NC_010175.1_390066_390357_+	NA	NA|191aa|down_2|NC_010175.1_390569_391142_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|261aa|down_3|NC_010175.1_391418_392201_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|791aa|down_4|NC_010175.1_392573_394946_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|136aa|down_5|NC_010175.1_394942_395350_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|87aa|down_6|NC_010175.1_395368_395629_-	NA	NA|106aa|down_7|NC_010175.1_395748_396066_-	pfam13591, MerR_2, MerR HTH family regulatory protein	NA|397aa|down_8|NC_010175.1_396084_397275_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|309aa|down_9|NC_010175.1_397413_398340_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	2	387218-387290	1	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TGACGAGCGCGCCGGAGGCGCGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|73aa|up_9|NC_010175.1_375154_375373_-,NA|50aa|up_6|NC_010175.1_378315_378465_+,NA|329aa|up_1|NC_010175.1_383183_384170_+,NA|604aa|down_0|NC_010175.1_388244_390056_+,NA|97aa|down_1|NC_010175.1_390066_390357_+,NA|87aa|down_6|NC_010175.1_395368_395629_-	NA|73aa|up_9|NC_010175.1_375154_375373_-	NA	NA|79aa|up_8|NC_010175.1_375520_375757_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|508aa|up_7|NC_010175.1_375922_377446_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|50aa|up_6|NC_010175.1_378315_378465_+	NA	NA|347aa|up_5|NC_010175.1_378518_379559_-	cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants	NA|477aa|up_4|NC_010175.1_379921_381352_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|165aa|up_3|NC_010175.1_381514_382009_+	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|303aa|up_2|NC_010175.1_382246_383155_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|329aa|up_1|NC_010175.1_383183_384170_+	NA	NA|730aa|up_0|NC_010175.1_384352_386542_+	pfam13229, Beta_helix, Right handed beta helix region	NA|604aa|down_0|NC_010175.1_388244_390056_+	NA	NA|97aa|down_1|NC_010175.1_390066_390357_+	NA	NA|191aa|down_2|NC_010175.1_390569_391142_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|261aa|down_3|NC_010175.1_391418_392201_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|791aa|down_4|NC_010175.1_392573_394946_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|136aa|down_5|NC_010175.1_394942_395350_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|87aa|down_6|NC_010175.1_395368_395629_-	NA	NA|106aa|down_7|NC_010175.1_395748_396066_-	pfam13591, MerR_2, MerR HTH family regulatory protein	NA|397aa|down_8|NC_010175.1_396084_397275_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|309aa|down_9|NC_010175.1_397413_398340_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	3	550814-550931	2	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CATTGGCTAACGCTACCGGTGAGGGTGCGGCAG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|65aa|up_5|NC_010175.1_542993_543188_+,NA|82aa|up_0|NC_010175.1_550342_550588_+,NA	NA|163aa|up_9|NC_010175.1_539202_539691_+	pfam07284, BCHF, 2-vinyl bacteriochlorophyllide hydratase (BCHF)	NA|330aa|up_8|NC_010175.1_539751_540741_+	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase	NA|412aa|up_7|NC_010175.1_540793_542029_+	TIGR02016, Chlorophyllide_reductase_35	NA|251aa|up_6|NC_010175.1_542235_542988_+	pfam02596, DUF169, Uncharacterized ArCR, COG2043	NA|65aa|up_5|NC_010175.1_542993_543188_+	NA	NA|371aa|up_4|NC_010175.1_543326_544439_+	TIGR02030, Magnesium-chelatase_subunit_ChlI, magnesium chelatase ATPase subunit I	NA|635aa|up_3|NC_010175.1_544493_546398_+	TIGR02031, Magnesium-chelatase_67_kDa_subunit, magnesium chelatase ATPase subunit D	NA|498aa|up_2|NC_010175.1_547600_549094_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|386aa|up_1|NC_010175.1_549170_550328_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|82aa|up_0|NC_010175.1_550342_550588_+	NA	NA|256aa|down_0|NC_010175.1_551031_551799_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|330aa|down_1|NC_010175.1_552171_553161_-	pfam09084, NMT1, NMT1/THI5 like	NA|273aa|down_2|NC_010175.1_553160_553979_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|98aa|down_3|NC_010175.1_553971_554265_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|263aa|down_4|NC_010175.1_554855_555644_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|146aa|down_5|NC_010175.1_555763_556201_+	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|628aa|down_6|NC_010175.1_556329_558213_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|313aa|down_7|NC_010175.1_558228_559167_-	pfam04203, Sortase, Sortase family	NA|381aa|down_8|NC_010175.1_559305_560448_-	cd00609, AAT_like, Aspartate aminotransferase family	NA|347aa|down_9|NC_010175.1_560451_561492_-	TIGR03617, F420_MSMEG_2256, probable F420-dependent oxidoreductase, MSMEG_2256 family
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	4	709527-731164	3,1,2,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG,TTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAGN,GTTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG,GTTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG,TTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG	37,37,37,37,36	0	0	NA	NA	NA:NA:NA:NA:NA	276,276,272,272,272	276	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|86aa|up_6|NC_010175.1_702041_702299_-,NA|146aa|up_5|NC_010175.1_702388_702826_-,NA|57aa|up_4|NC_010175.1_703298_703469_+,csx1|485aa|down_4|NC_010175.1_735372_736827_-,csx1|491aa|down_5|NC_010175.1_736823_738296_-	NA|563aa|up_9|NC_010175.1_696568_698257_+	pfam13229, Beta_helix, Right handed beta helix region	NA|326aa|up_8|NC_010175.1_699531_700509_+	pfam01916, DS, Deoxyhypusine synthase	NA|240aa|up_7|NC_010175.1_701309_702029_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|86aa|up_6|NC_010175.1_702041_702299_-	NA	NA|146aa|up_5|NC_010175.1_702388_702826_-	NA	NA|57aa|up_4|NC_010175.1_703298_703469_+	NA	NA|390aa|up_3|NC_010175.1_704368_705538_-	pfam11376, DUF3179, Protein of unknown function (DUF3179)	NA|494aa|up_2|NC_010175.1_706038_707520_+	PRK05326, PRK05326, potassium/proton antiporter	NA|217aa|up_1|NC_010175.1_707709_708360_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|182aa|up_0|NC_010175.1_708755_709301_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|269aa|down_0|NC_010175.1_731349_732156_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	cas2|94aa|down_1|NC_010175.1_732200_732482_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|340aa|down_2|NC_010175.1_732501_733521_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas6|288aa|down_3|NC_010175.1_733498_734362_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csx1|485aa|down_4|NC_010175.1_735372_736827_-	NA	csx1|491aa|down_5|NC_010175.1_736823_738296_-	NA	csm5gr7|472aa|down_6|NC_010175.1_738292_739708_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|362aa|down_7|NC_010175.1_739716_740802_-	TIGR01903, Hypothetical_protein	csm3gr7|273aa|down_8|NC_010175.1_740819_741638_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|151aa|down_9|NC_010175.1_741655_742108_-	pfam03750, Csm2_III-A, Csm2 Type III-A
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	5	1115802-1115911	4	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CTTTCAGCGATTTCGACAGGCGCTATGCGAGTGGTTTC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|73aa|up_9|NC_010175.1_1106601_1106820_-,NA|93aa|up_7|NC_010175.1_1107652_1107931_-,NA|239aa|up_6|NC_010175.1_1108200_1108917_-,NA|356aa|up_4|NC_010175.1_1109511_1110579_-,NA	NA|73aa|up_9|NC_010175.1_1106601_1106820_-	NA	NA|240aa|up_8|NC_010175.1_1106824_1107544_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|93aa|up_7|NC_010175.1_1107652_1107931_-	NA	NA|239aa|up_6|NC_010175.1_1108200_1108917_-	NA	NA|198aa|up_5|NC_010175.1_1108913_1109507_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|356aa|up_4|NC_010175.1_1109511_1110579_-	NA	NA|223aa|up_3|NC_010175.1_1110603_1111272_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|269aa|up_2|NC_010175.1_1111863_1112670_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|352aa|up_1|NC_010175.1_1112701_1113757_+	pfam09084, NMT1, NMT1/THI5 like	NA|406aa|up_0|NC_010175.1_1114015_1115233_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|211aa|down_0|NC_010175.1_1116155_1116788_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|500aa|down_1|NC_010175.1_1116817_1118317_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|228aa|down_2|NC_010175.1_1118330_1119014_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|797aa|down_3|NC_010175.1_1119042_1121433_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|726aa|down_4|NC_010175.1_1121540_1123718_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|327aa|down_5|NC_010175.1_1124847_1125828_-	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|233aa|down_6|NC_010175.1_1125831_1126530_-	pfam02589, LUD_dom, LUD domain	NA|157aa|down_7|NC_010175.1_1126526_1126997_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|250aa|down_8|NC_010175.1_1128486_1129236_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|614aa|down_9|NC_010175.1_1129796_1131638_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	6	1192928-1193059	5	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CTTCTACCGCATCAGGAAGCGCCAGCACAGCCCTCTCATC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|76aa|up_6|NC_010175.1_1181355_1181583_+,NA	NA|370aa|up_9|NC_010175.1_1178784_1179894_+	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|221aa|up_8|NC_010175.1_1179909_1180572_+	pfam14014, DUF4230, Protein of unknown function (DUF4230)	NA|218aa|up_7|NC_010175.1_1180590_1181244_+	pfam14014, DUF4230, Protein of unknown function (DUF4230)	NA|76aa|up_6|NC_010175.1_1181355_1181583_+	NA	NA|281aa|up_5|NC_010175.1_1181635_1182478_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|375aa|up_4|NC_010175.1_1182586_1183711_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|370aa|up_3|NC_010175.1_1184043_1185153_+	cd03795, GT4_WfcD-like, Escherichia coli alpha-1,3-mannosyltransferase WfcD and similar proteins	NA|449aa|up_2|NC_010175.1_1185207_1186554_+	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|729aa|up_1|NC_010175.1_1186997_1189184_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|748aa|up_0|NC_010175.1_1189461_1191705_+	TIGR02478, ATP-dependent_6-phosphofructokinase, 6-phosphofructokinase, eukaryotic type	NA|177aa|down_0|NC_010175.1_1195771_1196302_-	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|93aa|down_1|NC_010175.1_1196460_1196739_-	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|656aa|down_2|NC_010175.1_1196826_1198794_-	COG1287, COG1287, Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]	NA|1504aa|down_3|NC_010175.1_1198893_1203405_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1228aa|down_4|NC_010175.1_1203701_1207385_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|467aa|down_5|NC_010175.1_1207968_1209369_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|234aa|down_6|NC_010175.1_1209392_1210094_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|157aa|down_7|NC_010175.1_1210197_1210668_-	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|996aa|down_8|NC_010175.1_1210791_1213779_-	PRK06148, PRK06148, hypothetical protein; Provisional	NA|1989aa|down_9|NC_010175.1_1213990_1219957_-	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	7	1328734-1328853	6	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGGGGCAGGCGATGGCGCCGGGGGTGGTGGTGA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|65aa|up_3|NC_010175.1_1326431_1326626_+,NA|108aa|up_1|NC_010175.1_1327135_1327459_-,NA|247aa|up_0|NC_010175.1_1327489_1328230_-,NA|117aa|down_3|NC_010175.1_1334035_1334386_+	NA|596aa|up_9|NC_010175.1_1316404_1318192_+	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|149aa|up_8|NC_010175.1_1318400_1318847_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|452aa|up_7|NC_010175.1_1318953_1320309_+	TIGR00665, DnaB, replicative DNA helicase	NA|579aa|up_6|NC_010175.1_1321582_1323319_+	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|283aa|up_5|NC_010175.1_1323346_1324195_+	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|489aa|up_4|NC_010175.1_1324831_1326298_-	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|65aa|up_3|NC_010175.1_1326431_1326626_+	NA	NA|152aa|up_2|NC_010175.1_1326622_1327078_-	pfam02657, SufE, Fe-S metabolism associated domain	NA|108aa|up_1|NC_010175.1_1327135_1327459_-	NA	NA|247aa|up_0|NC_010175.1_1327489_1328230_-	NA	NA|275aa|down_0|NC_010175.1_1330478_1331303_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|471aa|down_1|NC_010175.1_1331492_1332905_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|126aa|down_2|NC_010175.1_1332931_1333309_-	COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms]	NA|117aa|down_3|NC_010175.1_1334035_1334386_+	NA	NA|588aa|down_4|NC_010175.1_1334417_1336181_+	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|426aa|down_5|NC_010175.1_1336459_1337737_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|172aa|down_6|NC_010175.1_1337755_1338271_-	pfam02674, Colicin_V, Colicin V production protein	NA|693aa|down_7|NC_010175.1_1338577_1340656_+	COG2766, PrkA, Putative Ser protein kinase [Signal transduction mechanisms]	NA|370aa|down_8|NC_010175.1_1340755_1341865_+	PRK05325, PRK05325, hypothetical protein; Provisional	NA|775aa|down_9|NC_010175.1_1341889_1344214_+	pfam04293, SpoVR, SpoVR like protein
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	8	1357492-1357576	7	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CTCCTGCCGGGTGGCGCTGGGAGGGGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|625aa|up_6|NC_010175.1_1345428_1347303_-,NA|126aa|down_6|NC_010175.1_1368493_1368871_-	NA|370aa|up_9|NC_010175.1_1340755_1341865_+	PRK05325, PRK05325, hypothetical protein; Provisional	NA|775aa|up_8|NC_010175.1_1341889_1344214_+	pfam04293, SpoVR, SpoVR like protein	NA|316aa|up_7|NC_010175.1_1344454_1345402_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|625aa|up_6|NC_010175.1_1345428_1347303_-	NA	NA|517aa|up_5|NC_010175.1_1347299_1348850_-	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|238aa|up_4|NC_010175.1_1348888_1349602_-	PRK00023, cmk, (d)CMP kinase	NA|514aa|up_3|NC_010175.1_1349635_1351177_-	PRK00074, guaA, GMP synthase; Reviewed	NA|524aa|up_2|NC_010175.1_1352281_1353853_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|428aa|up_1|NC_010175.1_1353891_1355175_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|550aa|up_0|NC_010175.1_1355573_1357223_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|263aa|down_0|NC_010175.1_1357712_1358501_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|710aa|down_1|NC_010175.1_1358505_1360635_-	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|547aa|down_2|NC_010175.1_1360673_1362314_-	cd13879, CuRO_2_McoP_like, The second cupredoxin domain of multicopper oxidase McoP and similar proteins	NA|165aa|down_3|NC_010175.1_1362353_1362848_-	pfam00034, Cytochrom_C, Cytochrome c	NA|779aa|down_4|NC_010175.1_1363276_1365613_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|349aa|down_5|NC_010175.1_1367450_1368497_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|126aa|down_6|NC_010175.1_1368493_1368871_-	NA	NA|303aa|down_7|NC_010175.1_1368867_1369776_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|223aa|down_8|NC_010175.1_1369839_1370508_-	TIGR04283, glycosyl_transferase_family_2, transferase 2, rSAM/selenodomain-associated	NA|369aa|down_9|NC_010175.1_1370528_1371635_-	pfam01555, N6_N4_Mtase, DNA methylase
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	9	1478361-1478454	8	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CGCGCGCTCCCAGGGGGTGTGAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|57aa|down_5|NC_010175.1_1486332_1486503_+	NA|286aa|up_9|NC_010175.1_1462396_1463254_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|246aa|up_8|NC_010175.1_1463293_1464031_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|262aa|up_7|NC_010175.1_1464023_1464809_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|996aa|up_6|NC_010175.1_1464845_1467833_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|250aa|up_5|NC_010175.1_1467833_1468583_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|117aa|up_4|NC_010175.1_1468627_1468978_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|352aa|up_3|NC_010175.1_1469116_1470172_+	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown]	NA|246aa|up_2|NC_010175.1_1471438_1472176_+	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|665aa|up_1|NC_010175.1_1472414_1474409_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|422aa|up_0|NC_010175.1_1474412_1475678_+	pfam08378, NERD, Nuclease-related domain	NA|277aa|down_0|NC_010175.1_1478793_1479624_+	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|207aa|down_1|NC_010175.1_1479693_1480314_+	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|679aa|down_2|NC_010175.1_1481819_1483856_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|241aa|down_3|NC_010175.1_1484090_1484813_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|347aa|down_4|NC_010175.1_1485078_1486119_-	PRK12858, PRK12858, tagatose 1,6-diphosphate aldolase; Reviewed	NA|57aa|down_5|NC_010175.1_1486332_1486503_+	NA	NA|578aa|down_6|NC_010175.1_1486610_1488344_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|818aa|down_7|NC_010175.1_1489819_1492273_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|275aa|down_8|NC_010175.1_1492296_1493121_-	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|620aa|down_9|NC_010175.1_1493217_1495077_-	PRK15098, PRK15098, beta-glucosidase BglX
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	10	1636350-1636586	9	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGCCCAACTGGCGCAGGCGCAGGC	24	0	0	NA	NA	NA	3	3	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|407aa|down_5|NC_010175.1_1646785_1648006_-	NA|255aa|up_9|NC_010175.1_1616515_1617280_+	COG3375, COG3375, Uncharacterized conserved protein [Function unknown]	NA|680aa|up_8|NC_010175.1_1617560_1619600_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|1121aa|up_7|NC_010175.1_1619623_1622986_+	TIGR02456, Trehalose_synthase, trehalose synthase	NA|678aa|up_6|NC_010175.1_1623045_1625079_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|593aa|up_5|NC_010175.1_1625346_1627125_+	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|813aa|up_4|NC_010175.1_1627155_1629594_+	cd10797, GH57N_APU_like_1, N-terminal putative catalytic domain of mainly uncharacterized prokaryotic proteins similar to archaeal thermoactive amylopullulanases; glycoside hydrolase family 57 (GH57)	NA|986aa|up_3|NC_010175.1_1629590_1632548_+	PRK14511, PRK14511, malto-oligosyltrehalose synthase	NA|83aa|up_2|NC_010175.1_1632874_1633123_-	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]	NA|467aa|up_1|NC_010175.1_1633391_1634792_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|165aa|up_0|NC_010175.1_1635028_1635523_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|416aa|down_0|NC_010175.1_1637846_1639094_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|315aa|down_1|NC_010175.1_1639342_1640287_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|743aa|down_2|NC_010175.1_1640283_1642512_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|367aa|down_3|NC_010175.1_1642513_1643614_+	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated	NA|502aa|down_4|NC_010175.1_1643631_1645137_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|407aa|down_5|NC_010175.1_1646785_1648006_-	NA	NA|414aa|down_6|NC_010175.1_1648273_1649515_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|205aa|down_7|NC_010175.1_1649662_1650277_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|211aa|down_8|NC_010175.1_1650370_1651003_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|365aa|down_9|NC_010175.1_1651238_1652333_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	11	1649586-1649686	10	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TTAACCTTTCGCCACTGCGTAGTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|407aa|up_1|NC_010175.1_1646785_1648006_-,NA	NA|467aa|up_9|NC_010175.1_1633391_1634792_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|165aa|up_8|NC_010175.1_1635028_1635523_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|607aa|up_7|NC_010175.1_1636005_1637826_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|416aa|up_6|NC_010175.1_1637846_1639094_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|315aa|up_5|NC_010175.1_1639342_1640287_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|743aa|up_4|NC_010175.1_1640283_1642512_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|367aa|up_3|NC_010175.1_1642513_1643614_+	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated	NA|502aa|up_2|NC_010175.1_1643631_1645137_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|407aa|up_1|NC_010175.1_1646785_1648006_-	NA	NA|414aa|up_0|NC_010175.1_1648273_1649515_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|211aa|down_0|NC_010175.1_1650370_1651003_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|365aa|down_1|NC_010175.1_1651238_1652333_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|354aa|down_2|NC_010175.1_1652426_1653488_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|633aa|down_3|NC_010175.1_1653632_1655531_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|453aa|down_4|NC_010175.1_1655657_1657016_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|184aa|down_5|NC_010175.1_1657180_1657732_+	pfam02674, Colicin_V, Colicin V production protein	NA|820aa|down_6|NC_010175.1_1657810_1660270_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|174aa|down_7|NC_010175.1_1662113_1662635_+	PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed	NA|536aa|down_8|NC_010175.1_1662638_1664246_+	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|236aa|down_9|NC_010175.1_1664235_1664943_+	PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU; Validated
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	12	1719397-1719512	11	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	AGTTGCTACCAGATCACGGCAGTAACCATACGCTATCGAGC	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|49aa|up_8|NC_010175.1_1710627_1710774_+,NA|72aa|up_4|NC_010175.1_1713570_1713786_-,NA|90aa|up_0|NC_010175.1_1719030_1719300_+,NA|48aa|down_0|NC_010175.1_1719994_1720138_+	NA|435aa|up_9|NC_010175.1_1709049_1710354_-	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|49aa|up_8|NC_010175.1_1710627_1710774_+	NA	NA|427aa|up_7|NC_010175.1_1710897_1712178_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|328aa|up_6|NC_010175.1_1712158_1713142_-	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|139aa|up_5|NC_010175.1_1713138_1713555_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|72aa|up_4|NC_010175.1_1713570_1713786_-	NA	NA|492aa|up_3|NC_010175.1_1713826_1715302_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|158aa|up_2|NC_010175.1_1715500_1715974_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|784aa|up_1|NC_010175.1_1716652_1719004_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|90aa|up_0|NC_010175.1_1719030_1719300_+	NA	NA|48aa|down_0|NC_010175.1_1719994_1720138_+	NA	NA|395aa|down_1|NC_010175.1_1720237_1721422_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|652aa|down_2|NC_010175.1_1721780_1723736_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|497aa|down_3|NC_010175.1_1723901_1725392_-	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|704aa|down_4|NC_010175.1_1725532_1727644_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|327aa|down_5|NC_010175.1_1727662_1728643_+	pfam03320, FBPase_glpX, Bacterial fructose-1,6-bisphosphatase, glpX-encoded	NA|417aa|down_6|NC_010175.1_1729452_1730703_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|173aa|down_7|NC_010175.1_1731099_1731618_+	cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)	NA|236aa|down_8|NC_010175.1_1731614_1732322_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|459aa|down_9|NC_010175.1_1732345_1733722_+	pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24), sialomucin
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	13	1744067-1744163	12	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GTAGTGGGGATGCCTGCACGCGGGCTGGAAG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|88aa|down_3|NC_010175.1_1747191_1747455_-	NA|327aa|up_9|NC_010175.1_1727662_1728643_+	pfam03320, FBPase_glpX, Bacterial fructose-1,6-bisphosphatase, glpX-encoded	NA|417aa|up_8|NC_010175.1_1729452_1730703_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|173aa|up_7|NC_010175.1_1731099_1731618_+	cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)	NA|236aa|up_6|NC_010175.1_1731614_1732322_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|459aa|up_5|NC_010175.1_1732345_1733722_+	pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24), sialomucin	NA|538aa|up_4|NC_010175.1_1733937_1735551_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|269aa|up_3|NC_010175.1_1735914_1736721_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|823aa|up_2|NC_010175.1_1737415_1739884_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|330aa|up_1|NC_010175.1_1740085_1741075_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|694aa|up_0|NC_010175.1_1741742_1743824_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|426aa|down_0|NC_010175.1_1744393_1745671_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|186aa|down_1|NC_010175.1_1745648_1746206_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|325aa|down_2|NC_010175.1_1746227_1747202_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|88aa|down_3|NC_010175.1_1747191_1747455_-	NA	NA|331aa|down_4|NC_010175.1_1747788_1748781_-	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen	NA|327aa|down_5|NC_010175.1_1748799_1749780_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|401aa|down_6|NC_010175.1_1750055_1751258_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|399aa|down_7|NC_010175.1_1751292_1752489_+	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|223aa|down_8|NC_010175.1_1752495_1753164_+	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|95aa|down_9|NC_010175.1_1753179_1753464_+	pfam04456, DUF503, Protein of unknown function (DUF503)
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	14	2487903-2488011	13	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GCGGGTTCCCACCCCGCCCCCCGTGGCGT	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|75aa|up_3|NC_010175.1_2484678_2484903_+,NA|281aa|up_2|NC_010175.1_2485146_2485989_-,NA|357aa|down_5|NC_010175.1_2495441_2496512_+,NA|301aa|down_6|NC_010175.1_2496689_2497592_+	NA|325aa|up_9|NC_010175.1_2476022_2476997_-	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|351aa|up_8|NC_010175.1_2477002_2478055_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|411aa|up_7|NC_010175.1_2478534_2479767_-	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|425aa|up_6|NC_010175.1_2480066_2481341_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|574aa|up_5|NC_010175.1_2481362_2483084_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|359aa|up_4|NC_010175.1_2483153_2484230_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|75aa|up_3|NC_010175.1_2484678_2484903_+	NA	NA|281aa|up_2|NC_010175.1_2485146_2485989_-	NA	NA|164aa|up_1|NC_010175.1_2486155_2486647_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|348aa|up_0|NC_010175.1_2486660_2487704_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|720aa|down_0|NC_010175.1_2488066_2490226_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|529aa|down_1|NC_010175.1_2490629_2492216_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|381aa|down_2|NC_010175.1_2492212_2493355_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|166aa|down_3|NC_010175.1_2493354_2493852_+	pfam14367, DUF4411, Domain of unknown function (DUF4411)	NA|439aa|down_4|NC_010175.1_2494128_2495445_+	cd17260, RMtype1_S_EcoEI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|357aa|down_5|NC_010175.1_2495441_2496512_+	NA	NA|301aa|down_6|NC_010175.1_2496689_2497592_+	NA	NA|1045aa|down_7|NC_010175.1_2497677_2500812_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|216aa|down_8|NC_010175.1_2501170_2501818_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|306aa|down_9|NC_010175.1_2502158_2503076_+	cd06260, DUF820, Domain of unknown function (DUF820)
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	15	2711688-2711805	14	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CCTACGATCCGTCCTTCTTTTCTCAGCACAAGACGTGATCCA	42	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA	NA|352aa|up_9|NC_010175.1_2699482_2700538_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|300aa|up_8|NC_010175.1_2700635_2701535_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|356aa|up_7|NC_010175.1_2701659_2702727_+	TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form	NA|292aa|up_6|NC_010175.1_2702735_2703611_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|326aa|up_5|NC_010175.1_2703614_2704592_-	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs	NA|156aa|up_4|NC_010175.1_2705573_2706041_+	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|358aa|up_3|NC_010175.1_2706608_2707682_+	TIGR03182, Pyruvate_dehydrogenase_E1_component_subunit_alpha, pyruvate dehydrogenase E1 component, alpha subunit	NA|332aa|up_2|NC_010175.1_2707774_2708770_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|451aa|up_1|NC_010175.1_2708799_2710152_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|299aa|up_0|NC_010175.1_2710360_2711257_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|529aa|down_0|NC_010175.1_2712049_2713636_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|504aa|down_1|NC_010175.1_2713659_2715171_-	COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]	NA|555aa|down_2|NC_010175.1_2715215_2716880_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|733aa|down_3|NC_010175.1_2716883_2719082_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|106aa|down_4|NC_010175.1_2719215_2719533_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|217aa|down_5|NC_010175.1_2719535_2720186_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|441aa|down_6|NC_010175.1_2720238_2721561_-	pfam00146, NADHdh, NADH dehydrogenase	NA|359aa|down_7|NC_010175.1_2721578_2722655_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|370aa|down_8|NC_010175.1_2722651_2723761_-	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|174aa|down_9|NC_010175.1_2723836_2724358_-	pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	16	2863251-2863376	15	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TTCACCACCGAGGCACAGAGGACACAAAGACTC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|58aa|up_3|NC_010175.1_2858372_2858546_-,NA|50aa|down_7|NC_010175.1_2873158_2873308_-	NA|468aa|up_9|NC_010175.1_2848451_2849855_+	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]	NA|845aa|up_8|NC_010175.1_2849949_2852484_+	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|464aa|up_7|NC_010175.1_2852538_2853930_+	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|420aa|up_6|NC_010175.1_2854593_2855853_-	TIGR02023, geranylgeranyl_bacteriochlorophyll_reductase, geranylgeranyl reductase	NA|311aa|up_5|NC_010175.1_2855882_2856815_-	TIGR01476, Bacteriochlorophyll_synthase_33_kDa_chain, bacteriochlorophyll/chlorophyll synthetase	NA|415aa|up_4|NC_010175.1_2856879_2858124_-	cd09224, CytoC_RC, Cytochrome C subunit of the bacterial photosynthetic reaction center	NA|58aa|up_3|NC_010175.1_2858372_2858546_-	NA	NA|54aa|up_2|NC_010175.1_2858573_2858735_-	pfam00556, LHC, Antenna complex alpha/beta subunit	NA|583aa|up_1|NC_010175.1_2859569_2861318_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|595aa|up_0|NC_010175.1_2861458_2863243_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|397aa|down_0|NC_010175.1_2863418_2864609_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|877aa|down_1|NC_010175.1_2864605_2867236_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|952aa|down_2|NC_010175.1_2867993_2870849_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|269aa|down_3|NC_010175.1_2871286_2872093_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|102aa|down_4|NC_010175.1_2872320_2872626_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|72aa|down_5|NC_010175.1_2872639_2872855_-	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|105aa|down_6|NC_010175.1_2872841_2873156_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|50aa|down_7|NC_010175.1_2873158_2873308_-	NA	NA|373aa|down_8|NC_010175.1_2873442_2874561_-	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis	NA|410aa|down_9|NC_010175.1_2874702_2875932_-	cd00887, MoeA, MoeA family
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	17	2974403-2974528	16	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ACCACTGTGGTGATAGAAGAGATACATCCGCGTTCATCCGCC	42	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|99aa|up_9|NC_010175.1_2958604_2958901_+,NA|376aa|up_8|NC_010175.1_2958906_2960034_+,NA|711aa|up_2|NC_010175.1_2966231_2968364_+,NA|589aa|up_0|NC_010175.1_2972243_2974010_-,NA|129aa|down_0|NC_010175.1_2975046_2975433_-,NA|114aa|down_3|NC_010175.1_2977540_2977882_-	NA|99aa|up_9|NC_010175.1_2958604_2958901_+	NA	NA|376aa|up_8|NC_010175.1_2958906_2960034_+	NA	NA|162aa|up_7|NC_010175.1_2960030_2960516_+	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown]	NA|107aa|up_6|NC_010175.1_2960515_2960836_+	pfam14107, DUF4280, Domain of unknown function (DUF4280)	NA|117aa|up_5|NC_010175.1_2960835_2961186_+	pfam04965, GPW_gp25, Gene 25-like lysozyme	NA|837aa|up_4|NC_010175.1_2961188_2963699_+	TIGR02243, hypothetical_protein_SCD8A	NA|840aa|up_3|NC_010175.1_2963695_2966215_+	TIGR02243, hypothetical_protein_SCD8A	NA|711aa|up_2|NC_010175.1_2966231_2968364_+	NA	NA|1036aa|up_1|NC_010175.1_2968413_2971521_+	pfam16075, DUF4815, Domain of unknown function (DUF4815)	NA|589aa|up_0|NC_010175.1_2972243_2974010_-	NA	NA|129aa|down_0|NC_010175.1_2975046_2975433_-	NA	NA|469aa|down_1|NC_010175.1_2975503_2976910_-	PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional	NA|114aa|down_2|NC_010175.1_2977204_2977546_+	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|114aa|down_3|NC_010175.1_2977540_2977882_-	NA	NA|402aa|down_4|NC_010175.1_2978442_2979648_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|76aa|down_5|NC_010175.1_2979720_2979948_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|188aa|down_6|NC_010175.1_2979971_2980535_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|142aa|down_7|NC_010175.1_2980612_2981038_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|238aa|down_8|NC_010175.1_2981096_2981810_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|183aa|down_9|NC_010175.1_2982020_2982569_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	18	3256944-3257086	17	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TAATACGGCAACCTTTGACATACCAGGACGGCGTGTCTGGTAAAGA	46	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|383aa|up_8|NC_010175.1_3247162_3248311_+,NA|70aa|up_4|NC_010175.1_3251516_3251726_+,NA|54aa|up_1|NC_010175.1_3254620_3254782_+,NA	NA|492aa|up_9|NC_010175.1_3245670_3247146_+	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain	NA|383aa|up_8|NC_010175.1_3247162_3248311_+	NA	NA|324aa|up_7|NC_010175.1_3248282_3249254_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|95aa|up_6|NC_010175.1_3249371_3249656_-	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|522aa|up_5|NC_010175.1_3249757_3251323_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|70aa|up_4|NC_010175.1_3251516_3251726_+	NA	NA|495aa|up_3|NC_010175.1_3251914_3253399_-	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|221aa|up_2|NC_010175.1_3253941_3254604_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|54aa|up_1|NC_010175.1_3254620_3254782_+	NA	NA|163aa|up_0|NC_010175.1_3254778_3255267_+	cd13913, ba3_CcO_II_C, C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II	NA|272aa|down_0|NC_010175.1_3257269_3258085_+	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional	NA|355aa|down_1|NC_010175.1_3258065_3259130_+	cd01149, HutB, Hemin binding protein HutB	NA|121aa|down_2|NC_010175.1_3260206_3260569_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|232aa|down_3|NC_010175.1_3260778_3261474_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|378aa|down_4|NC_010175.1_3262352_3263486_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|380aa|down_5|NC_010175.1_3263852_3264992_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|232aa|down_6|NC_010175.1_3264988_3265684_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|183aa|down_7|NC_010175.1_3266056_3266605_-	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|484aa|down_8|NC_010175.1_3266959_3268411_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|239aa|down_9|NC_010175.1_3268391_3269108_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	19	3378021-3378136	18	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GATCTACAGAGATGTGAAAGCTATCTGAAGGGGTTGCAAG	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|86aa|down_0|NC_010175.1_3378454_3378712_-	NA|290aa|up_9|NC_010175.1_3368217_3369087_+	pfam12183, NotI, Restriction endonuclease NotI	NA|301aa|up_8|NC_010175.1_3369106_3370009_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|291aa|up_7|NC_010175.1_3370131_3371004_+	pfam00582, Usp, Universal stress protein family	NA|164aa|up_6|NC_010175.1_3371008_3371500_-	pfam03473, MOSC, MOSC domain	NA|376aa|up_5|NC_010175.1_3371630_3372758_+	TIGR01013, Sodium-dependent_phosphate_transport_protein, Phosphate:Na+ Symporter (PNaS) Family	NA|274aa|up_4|NC_010175.1_3372765_3373587_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|465aa|up_3|NC_010175.1_3373678_3375073_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|378aa|up_2|NC_010175.1_3375210_3376344_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|307aa|up_1|NC_010175.1_3376340_3377261_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|128aa|up_0|NC_010175.1_3377470_3377854_-	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|86aa|down_0|NC_010175.1_3378454_3378712_-	NA	NA|525aa|down_1|NC_010175.1_3379194_3380769_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|341aa|down_2|NC_010175.1_3381016_3382039_-	pfam09084, NMT1, NMT1/THI5 like	NA|263aa|down_3|NC_010175.1_3382076_3382865_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|653aa|down_4|NC_010175.1_3383114_3385073_+	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|93aa|down_5|NC_010175.1_3385130_3385409_-	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|111aa|down_6|NC_010175.1_3385450_3385783_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|244aa|down_7|NC_010175.1_3386009_3386741_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|420aa|down_8|NC_010175.1_3386873_3388133_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|469aa|down_9|NC_010175.1_3388538_3389945_-	pfam13485, Peptidase_MA_2, Peptidase MA superfamily
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	20	3774742-3774857	19	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGGTTAAGCAGGATCGTCTTCGGGTGACCTATGGACGTAGT	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|203aa|down_5|NC_010175.1_3783512_3784121_-	NA|477aa|up_9|NC_010175.1_3761138_3762569_+	COG3552, CoxE, Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|199aa|up_8|NC_010175.1_3762807_3763404_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|646aa|up_7|NC_010175.1_3763688_3765626_+	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase	NA|126aa|up_6|NC_010175.1_3765594_3765972_+	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|958aa|up_5|NC_010175.1_3766007_3768881_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|528aa|up_4|NC_010175.1_3768873_3770457_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|198aa|up_3|NC_010175.1_3770459_3771053_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|362aa|up_2|NC_010175.1_3771027_3772113_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|453aa|up_1|NC_010175.1_3772122_3773481_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|401aa|up_0|NC_010175.1_3773535_3774738_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|449aa|down_0|NC_010175.1_3774899_3776246_-	cd14488, CBM6-CBM35-CBM36_like_2, uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily	NA|387aa|down_1|NC_010175.1_3776500_3777661_-	pfam11258, DUF3048, Protein of unknown function (DUF3048) N-terminal domain	NA|1175aa|down_2|NC_010175.1_3778323_3781848_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|280aa|down_3|NC_010175.1_3781848_3782688_-	pfam02810, SEC-C, SEC-C motif	NA|270aa|down_4|NC_010175.1_3782706_3783516_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|203aa|down_5|NC_010175.1_3783512_3784121_-	NA	NA|1114aa|down_6|NC_010175.1_3784117_3787459_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|161aa|down_7|NC_010175.1_3788278_3788761_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|447aa|down_8|NC_010175.1_3788879_3790220_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|124aa|down_9|NC_010175.1_3790262_3790634_-	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	21	3950341-3950460	20	CRISPRCasFinder	no	WYL,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Unclear	GCTGAATGTGCTCATACCAATCATCGAGTCGGTCCGGCATGC	42	0	0	NA	NA	NA	1	1	Unclear	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|222aa|up_7|NC_010175.1_3942397_3943063_+,NA|126aa|up_2|NC_010175.1_3947025_3947403_-,NA	NA|295aa|up_9|NC_010175.1_3940931_3941816_-	pfam03881, Fructosamin_kin, Fructosamine kinase	NA|88aa|up_8|NC_010175.1_3941935_3942199_-	pfam04024, PspC, PspC domain	NA|222aa|up_7|NC_010175.1_3942397_3943063_+	NA	NA|255aa|up_6|NC_010175.1_3943363_3944128_-	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|172aa|up_5|NC_010175.1_3944146_3944662_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|402aa|up_4|NC_010175.1_3944834_3946040_+	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|303aa|up_3|NC_010175.1_3946036_3946945_+	cd09989, Arginase, Arginase family	NA|126aa|up_2|NC_010175.1_3947025_3947403_-	NA	NA|377aa|up_1|NC_010175.1_3947511_3948642_+	PRK14461, PRK14461, ribosomal RNA large subunit methyltransferase N; Provisional	NA|439aa|up_0|NC_010175.1_3948687_3950004_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|70aa|down_0|NC_010175.1_3951002_3951212_+	pfam01978, TrmB, Sugar-specific transcriptional regulator TrmB	NA|337aa|down_1|NC_010175.1_3951324_3952335_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	WYL|321aa|down_2|NC_010175.1_3952396_3953359_+	pfam13280, WYL, WYL domain	cas8b2|501aa|down_3|NC_010175.1_3953430_3954933_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|down_4|NC_010175.1_3954959_3956051_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|down_5|NC_010175.1_3956059_3956797_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|785aa|down_6|NC_010175.1_3956774_3959129_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas6|334aa|down_7|NC_010175.1_3959131_3960133_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|338aa|down_8|NC_010175.1_3960457_3961471_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|86aa|down_9|NC_010175.1_3961482_3961740_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	22	3962639-3975982	5,21,2,6,7	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	WYL,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Unclear	CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC,CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC,CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC,CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC,CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC	37,37,37,37,37	0	0	NA	NA	NA:NA:NA:NA:NA	174,180,181,174,174	181	Unclear	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA	NA|337aa|up_9|NC_010175.1_3951324_3952335_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	WYL|321aa|up_8|NC_010175.1_3952396_3953359_+	pfam13280, WYL, WYL domain	cas8b2|501aa|up_7|NC_010175.1_3953430_3954933_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|up_6|NC_010175.1_3954959_3956051_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|up_5|NC_010175.1_3956059_3956797_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|785aa|up_4|NC_010175.1_3956774_3959129_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas6|334aa|up_3|NC_010175.1_3959131_3960133_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|338aa|up_2|NC_010175.1_3960457_3961471_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|86aa|up_1|NC_010175.1_3961482_3961740_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|203aa|up_0|NC_010175.1_3961726_3962335_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|967aa|down_0|NC_010175.1_3976151_3979052_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|312aa|down_1|NC_010175.1_3979070_3980006_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|253aa|down_2|NC_010175.1_3980038_3980797_-	TIGR01963, D-beta-hydroxybutyrate_dehydrogenase, 3-hydroxybutyrate dehydrogenase	NA|218aa|down_3|NC_010175.1_3980835_3981489_-	PRK00279, adk, adenylate kinase; Reviewed	NA|885aa|down_4|NC_010175.1_3981501_3984156_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|277aa|down_5|NC_010175.1_3984213_3985044_-	pfam00932, LTD, Lamin Tail Domain	NA|831aa|down_6|NC_010175.1_3985089_3987582_-	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity	NA|555aa|down_7|NC_010175.1_3987818_3989483_-	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|499aa|down_8|NC_010175.1_3989489_3990986_-	cd05941, MCS, Malonyl-CoA synthetase (MCS)	NA|877aa|down_9|NC_010175.1_3991208_3993839_-	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	23	4038578-4038704	22	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGGAGCGCGCCTCCGGTGCGCATTACCAGCGGTGTATCGC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|433aa|up_7|NC_010175.1_4027638_4028937_+,NA|325aa|up_6|NC_010175.1_4029013_4029988_+,NA|627aa|up_2|NC_010175.1_4033099_4034980_+,NA|329aa|up_0|NC_010175.1_4035875_4036862_-,NA|285aa|down_7|NC_010175.1_4049472_4050327_-	NA|331aa|up_9|NC_010175.1_4025745_4026738_-	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|250aa|up_8|NC_010175.1_4026876_4027626_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|433aa|up_7|NC_010175.1_4027638_4028937_+	NA	NA|325aa|up_6|NC_010175.1_4029013_4029988_+	NA	NA|160aa|up_5|NC_010175.1_4029999_4030479_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|233aa|up_4|NC_010175.1_4030662_4031361_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|275aa|up_3|NC_010175.1_4031382_4032207_+	pfam01972, SDH_sah, Serine dehydrogenase proteinase	NA|627aa|up_2|NC_010175.1_4033099_4034980_+	NA	NA|236aa|up_1|NC_010175.1_4035020_4035728_-	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	NA|329aa|up_0|NC_010175.1_4035875_4036862_-	NA	NA|187aa|down_0|NC_010175.1_4038845_4039406_+	PRK06474, PRK06474, hypothetical protein; Provisional	NA|257aa|down_1|NC_010175.1_4039716_4040487_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|456aa|down_2|NC_010175.1_4040567_4041935_+	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|192aa|down_3|NC_010175.1_4042115_4042691_+	pfam12867, DinB_2, DinB superfamily	NA|761aa|down_4|NC_010175.1_4043006_4045289_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|579aa|down_5|NC_010175.1_4045485_4047222_-	pfam11832, DUF3352, Protein of unknown function (DUF3352)	NA|637aa|down_6|NC_010175.1_4047524_4049435_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|285aa|down_7|NC_010175.1_4049472_4050327_-	NA	NA|443aa|down_8|NC_010175.1_4052751_4054080_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|109aa|down_9|NC_010175.1_4054084_4054411_+	pfam04296, DUF448, Protein of unknown function (DUF448)
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	24	4078140-4078360	8	PILER-CR	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	AAAACCTCTGTGTCCTCTGTGTCTCTGTGGTGAATACATCCATGT	45	0	0	NA	NA	NA	2	2	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|156aa|up_3|NC_010175.1_4074026_4074494_+,NA|85aa|down_1|NC_010175.1_4079877_4080132_+	NA|354aa|up_9|NC_010175.1_4067066_4068128_-	cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE	NA|348aa|up_8|NC_010175.1_4068124_4069168_-	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed	NA|336aa|up_7|NC_010175.1_4069594_4070602_-	PRK13022, secF, protein translocase subunit SecF	NA|464aa|up_6|NC_010175.1_4070659_4072051_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|233aa|up_5|NC_010175.1_4072270_4072969_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|269aa|up_4|NC_010175.1_4073036_4073843_-	pfam04264, YceI, YceI-like domain	NA|156aa|up_3|NC_010175.1_4074026_4074494_+	NA	NA|288aa|up_2|NC_010175.1_4075078_4075942_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|353aa|up_1|NC_010175.1_4075975_4077034_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|348aa|up_0|NC_010175.1_4077030_4078074_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|447aa|down_0|NC_010175.1_4078479_4079820_+	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily	NA|85aa|down_1|NC_010175.1_4079877_4080132_+	NA	NA|727aa|down_2|NC_010175.1_4080235_4082416_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|140aa|down_3|NC_010175.1_4082524_4082944_+	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|327aa|down_4|NC_010175.1_4082973_4083954_+	COG1592, COG1592, Rubrerythrin [Energy production and conversion]	NA|337aa|down_5|NC_010175.1_4084034_4085045_-	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional	NA|140aa|down_6|NC_010175.1_4086132_4086552_-	PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional	NA|472aa|down_7|NC_010175.1_4086621_4088037_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|291aa|down_8|NC_010175.1_4088055_4088928_-	PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional	NA|523aa|down_9|NC_010175.1_4088993_4090562_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	25	4205927-4206052	23	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GCGGATGAACATTCTTTTGCGAGCCGGAGGCCCGCGCTCCCAGCG	45	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|194aa|up_3|NC_010175.1_4202756_4203338_-,NA|89aa|up_2|NC_010175.1_4203484_4203751_-,NA|72aa|up_1|NC_010175.1_4204382_4204598_-,NA|121aa|up_0|NC_010175.1_4205432_4205795_+,NA|57aa|down_2|NC_010175.1_4209767_4209938_-,NA|81aa|down_9|NC_010175.1_4217013_4217256_+	NA|862aa|up_9|NC_010175.1_4193486_4196072_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|211aa|up_8|NC_010175.1_4196216_4196849_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|475aa|up_7|NC_010175.1_4197161_4198586_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|305aa|up_6|NC_010175.1_4198935_4199850_+	cd01144, BtuF, Cobalamin binding protein BtuF	NA|628aa|up_5|NC_010175.1_4199896_4201780_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|269aa|up_4|NC_010175.1_4201850_4202657_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|194aa|up_3|NC_010175.1_4202756_4203338_-	NA	NA|89aa|up_2|NC_010175.1_4203484_4203751_-	NA	NA|72aa|up_1|NC_010175.1_4204382_4204598_-	NA	NA|121aa|up_0|NC_010175.1_4205432_4205795_+	NA	NA|505aa|down_0|NC_010175.1_4206216_4207731_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|337aa|down_1|NC_010175.1_4208615_4209626_-	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1	NA|57aa|down_2|NC_010175.1_4209767_4209938_-	NA	NA|163aa|down_3|NC_010175.1_4210187_4210676_-	pfam08592, DUF1772, Domain of unknown function (DUF1772)	NA|160aa|down_4|NC_010175.1_4210700_4211180_-	pfam10027, DUF2269, Predicted integral membrane protein (DUF2269)	NA|330aa|down_5|NC_010175.1_4211282_4212272_+	pfam12852, Cupin_6, Cupin	NA|127aa|down_6|NC_010175.1_4214722_4215103_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|261aa|down_7|NC_010175.1_4215306_4216089_-	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|261aa|down_8|NC_010175.1_4216085_4216868_-	pfam02517, Abi, CAAX protease self-immunity	NA|81aa|down_9|NC_010175.1_4217013_4217256_+	NA
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	26	4533814-4540010	9,24,3	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas6,csx1,RT,cas1,cas2	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Unclear	CAGCAGAGCATTGCCCCGCAATGAAGGGGTTTGAAAC,CAGCAGAGCATTGCCCCGCAATGAAGGGGTTTGAAAC,CAGCAGAGCATTGCCCCGCAATGAAGGGGTTTGAAAC	37,37,37	0	0	NA	NA	NA:NA:NA	77,83,83	83	Unclear	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA	NA|1224aa|up_9|NC_010175.1_4519533_4523205_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	cas6|329aa|up_8|NC_010175.1_4523412_4524399_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csx1|452aa|up_7|NC_010175.1_4524410_4525766_+	cd09702, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	WYL|339aa|up_6|NC_010175.1_4525799_4526816_+	pfam13280, WYL, WYL domain	csx1|242aa|up_5|NC_010175.1_4526812_4527538_+	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|211aa|up_4|NC_010175.1_4528079_4528712_+	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	RT|435aa|up_3|NC_010175.1_4528938_4530243_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas1|332aa|up_2|NC_010175.1_4530274_4531270_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|94aa|up_1|NC_010175.1_4531266_4531548_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	WYL|701aa|up_0|NC_010175.1_4531548_4533651_-	pfam13280, WYL, WYL domain	NA|422aa|down_0|NC_010175.1_4540265_4541531_+	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|409aa|down_1|NC_010175.1_4541815_4543042_-	smart00271, DnaJ, DnaJ molecular chaperone homology domain	NA|139aa|down_2|NC_010175.1_4543125_4543542_+	pfam01878, EVE, EVE domain	NA|235aa|down_3|NC_010175.1_4543749_4544454_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|396aa|down_4|NC_010175.1_4544450_4545638_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|729aa|down_5|NC_010175.1_4545634_4547821_+	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily	NA|664aa|down_6|NC_010175.1_4548502_4550494_+	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|445aa|down_7|NC_010175.1_4551072_4552407_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|216aa|down_8|NC_010175.1_4552463_4553111_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|600aa|down_9|NC_010175.1_4553885_4555685_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	27	4632942-4633057	25	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ACGTGTGAGCTGGAGGCTCGCGCTCCCAGGG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|59aa|up_1|NC_010175.1_4631829_4632006_+,NA	NA|369aa|up_9|NC_010175.1_4623438_4624545_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|245aa|up_8|NC_010175.1_4624656_4625391_-	pfam09549, RE_Bpu10I, Bpu10I restriction endonuclease	NA|414aa|up_7|NC_010175.1_4625563_4626805_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|334aa|up_6|NC_010175.1_4626850_4627852_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|137aa|up_5|NC_010175.1_4628226_4628637_-	pfam09996, DUF2237, Uncharacterized protein conserved in bacteria (DUF2237)	NA|404aa|up_4|NC_010175.1_4629143_4630355_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|102aa|up_3|NC_010175.1_4630378_4630684_-	pfam01637, ATPase_2, ATPase domain predominantly from Archaea	NA|275aa|up_2|NC_010175.1_4630680_4631505_-	pfam12770, CHAT, CHAT domain	NA|59aa|up_1|NC_010175.1_4631829_4632006_+	NA	NA|130aa|up_0|NC_010175.1_4632083_4632473_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	NA|314aa|down_0|NC_010175.1_4633207_4634149_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|350aa|down_1|NC_010175.1_4634145_4635195_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|652aa|down_2|NC_010175.1_4635920_4637876_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|318aa|down_3|NC_010175.1_4637942_4638896_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|179aa|down_4|NC_010175.1_4639639_4640176_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|325aa|down_5|NC_010175.1_4640435_4641410_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|601aa|down_6|NC_010175.1_4641888_4643691_+	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	NA|196aa|down_7|NC_010175.1_4643840_4644428_-	pfam04173, DoxD, TQO small subunit DoxD	NA|287aa|down_8|NC_010175.1_4646434_4647295_-	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|788aa|down_9|NC_010175.1_4647350_4649714_-	TIGR02416, Carbon_monoxide_dehydrogenase_large_chain, carbon-monoxide dehydrogenase, large subunit
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	28	4844184-4844288	26	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GTCTTCGGTGATTGGCAAGCGTTC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|281aa|up_9|NC_010175.1_4833412_4834255_-,NA|421aa|up_1|NC_010175.1_4842653_4843916_+,NA|85aa|up_0|NC_010175.1_4843923_4844178_-,NA|78aa|down_3|NC_010175.1_4850059_4850293_+,NA|216aa|down_5|NC_010175.1_4851483_4852131_-,NA|233aa|down_8|NC_010175.1_4853601_4854300_-	NA|281aa|up_9|NC_010175.1_4833412_4834255_-	NA	NA|300aa|up_8|NC_010175.1_4834412_4835312_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|306aa|up_7|NC_010175.1_4835699_4836617_+	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|651aa|up_6|NC_010175.1_4836629_4838582_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|201aa|up_5|NC_010175.1_4838851_4839454_-	PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; Provisional	NA|252aa|up_4|NC_010175.1_4839458_4840214_-	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|289aa|up_3|NC_010175.1_4840220_4841087_-	PRK07432, PRK07432, S-methyl-5'-thioadenosine phosphorylase	NA|227aa|up_2|NC_010175.1_4841657_4842338_+	pfam02517, Abi, CAAX protease self-immunity	NA|421aa|up_1|NC_010175.1_4842653_4843916_+	NA	NA|85aa|up_0|NC_010175.1_4843923_4844178_-	NA	NA|1093aa|down_0|NC_010175.1_4844689_4847968_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|265aa|down_1|NC_010175.1_4847991_4848786_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|265aa|down_2|NC_010175.1_4848930_4849725_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|78aa|down_3|NC_010175.1_4850059_4850293_+	NA	NA|259aa|down_4|NC_010175.1_4850386_4851163_-	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|216aa|down_5|NC_010175.1_4851483_4852131_-	NA	NA|124aa|down_6|NC_010175.1_4852792_4853164_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|145aa|down_7|NC_010175.1_4853163_4853598_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|233aa|down_8|NC_010175.1_4853601_4854300_-	NA	NA|515aa|down_9|NC_010175.1_4854662_4856207_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	29	4965582-4965683	27	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ATCACCGCACGGCACCAGCGCGGTC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|228aa|up_5|NC_010175.1_4953143_4953827_+,NA|50aa|up_2|NC_010175.1_4958331_4958481_-,NA|1222aa|up_1|NC_010175.1_4959916_4963582_+,NA|216aa|down_1|NC_010175.1_4967837_4968485_+,NA|653aa|down_6|NC_010175.1_4973164_4975123_-	NA|439aa|up_9|NC_010175.1_4947161_4948478_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|571aa|up_8|NC_010175.1_4948562_4950275_-	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]	NA|269aa|up_7|NC_010175.1_4950417_4951224_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|452aa|up_6|NC_010175.1_4951230_4952586_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|228aa|up_5|NC_010175.1_4953143_4953827_+	NA	NA|449aa|up_4|NC_010175.1_4953858_4955205_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|941aa|up_3|NC_010175.1_4955242_4958065_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|50aa|up_2|NC_010175.1_4958331_4958481_-	NA	NA|1222aa|up_1|NC_010175.1_4959916_4963582_+	NA	NA|342aa|up_0|NC_010175.1_4963935_4964961_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|205aa|down_0|NC_010175.1_4966501_4967116_+	pfam02674, Colicin_V, Colicin V production protein	NA|216aa|down_1|NC_010175.1_4967837_4968485_+	NA	NA|406aa|down_2|NC_010175.1_4968945_4970163_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|544aa|down_3|NC_010175.1_4970278_4971910_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|262aa|down_4|NC_010175.1_4971906_4972692_-	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|127aa|down_5|NC_010175.1_4972767_4973148_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|653aa|down_6|NC_010175.1_4973164_4975123_-	NA	NA|66aa|down_7|NC_010175.1_4975140_4975338_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|398aa|down_8|NC_010175.1_4975330_4976524_-	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|181aa|down_9|NC_010175.1_4976523_4977066_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	30	5069390-5069495	28	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CACCGAAACCGATAGCAGACTCTCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|141aa|up_5|NC_010175.1_5059525_5059948_-,NA|73aa|down_5|NC_010175.1_5074845_5075064_-	NA|448aa|up_9|NC_010175.1_5053611_5054955_+	PRK07233, PRK07233, hypothetical protein; Provisional	NA|491aa|up_8|NC_010175.1_5054962_5056435_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|345aa|up_7|NC_010175.1_5056466_5057501_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|522aa|up_6|NC_010175.1_5057891_5059457_-	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|141aa|up_5|NC_010175.1_5059525_5059948_-	NA	NA|545aa|up_4|NC_010175.1_5059960_5061595_-	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase	NA|1210aa|up_3|NC_010175.1_5062017_5065647_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|133aa|up_2|NC_010175.1_5065663_5066062_+	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|723aa|up_1|NC_010175.1_5066042_5068211_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|391aa|up_0|NC_010175.1_5068211_5069384_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|292aa|down_0|NC_010175.1_5069612_5070488_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|245aa|down_1|NC_010175.1_5070565_5071300_+	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|444aa|down_2|NC_010175.1_5071301_5072633_+	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]	NA|310aa|down_3|NC_010175.1_5072706_5073636_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|384aa|down_4|NC_010175.1_5073660_5074812_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|73aa|down_5|NC_010175.1_5074845_5075064_-	NA	NA|439aa|down_6|NC_010175.1_5075633_5076950_+	cd01980, Chlide_reductase_Y, Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY)	NA|494aa|down_7|NC_010175.1_5076946_5078428_+	cd01982, Chlide_reductase_Z, Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ)	NA|262aa|down_8|NC_010175.1_5078503_5079289_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|427aa|down_9|NC_010175.1_5079481_5080762_+	PRK00077, eno, enolase; Provisional
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	31	5173307-5173408	29	CRISPRCasFinder	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGGGGCGTGGCGCATACCACCCTGA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|348aa|down_1|NC_010175.1_5175455_5176499_+	NA|290aa|up_9|NC_010175.1_5159543_5160413_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|310aa|up_8|NC_010175.1_5160462_5161392_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|460aa|up_7|NC_010175.1_5161384_5162764_+	COG5368, COG5368, Uncharacterized protein conserved in bacteria [Function unknown]	NA|328aa|up_6|NC_010175.1_5162763_5163747_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|413aa|up_5|NC_010175.1_5163750_5164989_+	pfam10091, Glycoamylase, Putative glucoamylase	NA|756aa|up_4|NC_010175.1_5165007_5167275_+	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|703aa|up_3|NC_010175.1_5167375_5169484_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|329aa|up_2|NC_010175.1_5169533_5170520_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|345aa|up_1|NC_010175.1_5170587_5171622_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|499aa|up_0|NC_010175.1_5171618_5173115_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|410aa|down_0|NC_010175.1_5173860_5175090_-	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria	NA|348aa|down_1|NC_010175.1_5175455_5176499_+	NA	NA|518aa|down_2|NC_010175.1_5177927_5179481_+	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional	NA|393aa|down_3|NC_010175.1_5179462_5180641_-	PRK00064, recF, recombination protein F; Reviewed	NA|347aa|down_4|NC_010175.1_5180661_5181702_-	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|523aa|down_5|NC_010175.1_5182043_5183612_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|392aa|down_6|NC_010175.1_5184516_5185692_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|457aa|down_7|NC_010175.1_5186374_5187745_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|393aa|down_8|NC_010175.1_5187757_5188936_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|278aa|down_9|NC_010175.1_5188945_5189779_-	cd16443, LplA, lipoate-protein ligase
GCF_000018865.1_ASM1886v1	NC_010175	Chloroflexus aurantiacus J-10-fl, complete sequence	32	5185240-5185607	4	CRT	no		csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GAACAGGCCCGCCGCGAAGCCGAGGCNCGGGC	32	2	2	5185482-5185512|5185545-5185575	NC_010175.1_3735107-3735077|NC_010175.1_3735170-3735140	NA	5	5	Orphan	csa3,cas5,cas7,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|348aa|up_4|NC_010175.1_5175455_5176499_+,NA|81aa|down_6|NC_010175.1_5194380_5194623_-	NA|703aa|up_9|NC_010175.1_5167375_5169484_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|329aa|up_8|NC_010175.1_5169533_5170520_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|345aa|up_7|NC_010175.1_5170587_5171622_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|499aa|up_6|NC_010175.1_5171618_5173115_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|410aa|up_5|NC_010175.1_5173860_5175090_-	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria	NA|348aa|up_4|NC_010175.1_5175455_5176499_+	NA	NA|518aa|up_3|NC_010175.1_5177927_5179481_+	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional	NA|393aa|up_2|NC_010175.1_5179462_5180641_-	PRK00064, recF, recombination protein F; Reviewed	NA|347aa|up_1|NC_010175.1_5180661_5181702_-	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|523aa|up_0|NC_010175.1_5182043_5183612_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|457aa|down_0|NC_010175.1_5186374_5187745_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|393aa|down_1|NC_010175.1_5187757_5188936_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|278aa|down_2|NC_010175.1_5188945_5189779_-	cd16443, LplA, lipoate-protein ligase	NA|375aa|down_3|NC_010175.1_5189760_5190885_-	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|825aa|down_4|NC_010175.1_5190881_5193356_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|306aa|down_5|NC_010175.1_5193403_5194321_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|81aa|down_6|NC_010175.1_5194380_5194623_-	NA	NA|211aa|down_7|NC_010175.1_5194704_5195337_-	cd07403, MPP_TTHA0053, Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain	NA|525aa|down_8|NC_010175.1_5195454_5197029_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|911aa|down_9|NC_010175.1_5197993_5200726_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed
