assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	1	75115-75482	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Unclear	GTTTCCATACCTCAAAGGAAGTATTGAAAC,GTTTCCATACCTCNAAGGAAGNATTGAAAC,GTTTCCATACCTCTAAGGAAGGATTGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	5,5,4	5	Orphan	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA,NA	NA|344aa|up_9|NC_011978.1_63325_64357_-	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional	NA|547aa|up_8|NC_011978.1_64414_66055_+	PRK14869, PRK14869, putative manganese-dependent inorganic diphosphatase	NA|299aa|up_7|NC_011978.1_66059_66956_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|360aa|up_6|NC_011978.1_66885_67965_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|236aa|up_5|NC_011978.1_67964_68672_+	pfam01694, Rhomboid, Rhomboid family	NA|435aa|up_4|NC_011978.1_68658_69963_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|486aa|up_3|NC_011978.1_69956_71414_-	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein	NA|142aa|up_2|NC_011978.1_71373_71799_-	COG5496, COG5496, Predicted thioesterase [General function prediction only]	NA|611aa|up_1|NC_011978.1_71795_73628_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|415aa|up_0|NC_011978.1_73614_74859_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain	NA|256aa|down_0|NC_011978.1_76100_76868_+	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|180aa|down_1|NC_011978.1_76868_77408_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	DEDDh|1368aa|down_2|NC_011978.1_77404_81508_-	PRK00448, polC, DNA polymerase III PolC; Validated	NA|166aa|down_3|NC_011978.1_81494_81992_-	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|336aa|down_4|NC_011978.1_82073_83081_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|479aa|down_5|NC_011978.1_83091_84528_-	COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]	NA|384aa|down_6|NC_011978.1_84520_85672_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|461aa|down_7|NC_011978.1_85768_87151_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|295aa|down_8|NC_011978.1_87266_88151_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|218aa|down_9|NC_011978.1_88147_88801_+	COG1655, COG1655, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	2	271824-272186	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Orphan	GTTTCCATACCTCTAAGGAAGTATTGAAACC,GTTTCAATACTTCCTTAGAGGTATGGAAAC,GTTTCAATACTTCCTTAGAGGTATGGAAAC	31,30,30	0	0	NA	NA	III-A:III-A:III-A	3,5,5	5	Orphan	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA,NA|69aa|down_5|NC_011978.1_278874_279081_+	NA|183aa|up_9|NC_011978.1_260883_261432_+	PRK04296, PRK04296, thymidine kinase; Provisional	NA|405aa|up_8|NC_011978.1_261421_262636_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|224aa|up_7|NC_011978.1_262616_263288_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|378aa|up_6|NC_011978.1_263692_264826_+	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type	NA|508aa|up_5|NC_011978.1_264818_266342_+	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|152aa|up_4|NC_011978.1_266338_266794_+	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase	NA|426aa|up_3|NC_011978.1_266790_268068_+	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|246aa|up_2|NC_011978.1_268055_268793_+	cd00981, arch_gltB, Archaeal-type gltB domain	NA|372aa|up_1|NC_011978.1_268821_269937_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|407aa|up_0|NC_011978.1_269941_271162_-	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins	NA|405aa|down_0|NC_011978.1_272356_273571_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|235aa|down_1|NC_011978.1_273557_274262_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|336aa|down_2|NC_011978.1_274258_275266_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|420aa|down_3|NC_011978.1_275262_276522_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|329aa|down_4|NC_011978.1_276537_277524_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|69aa|down_5|NC_011978.1_278874_279081_+	NA	NA|327aa|down_6|NC_011978.1_279008_279989_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|357aa|down_7|NC_011978.1_280001_281072_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|292aa|down_8|NC_011978.1_281187_282063_+	TIGR00433, biotin_synthase, biotin synthase	NA|117aa|down_9|NC_011978.1_282056_282407_+	cd11528, NTP-PPase_MazG_Nterm, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	3	311329-311756	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Orphan	GTTTCCATACCTCAAAGGAAGTATTGAAAC,GTTTCCATACCTCAAAGGAAGTATTGAAAC,GTTTCCATACCTCAAAGGAAGTATTGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	6,6,5	6	Orphan	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA,NA|59aa|down_9|NC_011978.1_321254_321431_-	NA|337aa|up_9|NC_011978.1_301201_302212_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|322aa|up_8|NC_011978.1_302208_303174_-	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|651aa|up_7|NC_011978.1_303255_305208_-	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|182aa|up_6|NC_011978.1_305179_305725_-	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|167aa|up_5|NC_011978.1_305849_306350_-	cd02150, nitroreductase, nitroreductase family protein	NA|220aa|up_4|NC_011978.1_306377_307037_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|449aa|up_3|NC_011978.1_307013_308360_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|112aa|up_2|NC_011978.1_308405_308741_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|444aa|up_1|NC_011978.1_308765_310097_-	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|322aa|up_0|NC_011978.1_310205_311171_-	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|208aa|down_0|NC_011978.1_312380_313004_+	pfam01810, LysE, LysE type translocator	NA|146aa|down_1|NC_011978.1_312962_313400_-	pfam01220, DHquinase_II, Dehydroquinase class II	NA|493aa|down_2|NC_011978.1_313396_314875_-	PRK13951, PRK13951, bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB	NA|377aa|down_3|NC_011978.1_314822_315953_-	TIGR00033, Chorismate_synthase, chorismate synthase	NA|254aa|down_4|NC_011978.1_315949_316711_-	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|422aa|down_5|NC_011978.1_316707_317973_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|254aa|down_6|NC_011978.1_317969_318731_-	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism]	NA|339aa|down_7|NC_011978.1_318727_319744_-	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed	NA|414aa|down_8|NC_011978.1_320000_321242_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|59aa|down_9|NC_011978.1_321254_321431_-	NA
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	4	704816-705245	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Type III-D,Type III-C,Type III-B,,Type III-A	TTTCCATACCTCTAAGGAAGTATTGAAAC,GTTTCAATACTTCCTTAGAGGTATGGAAAC,GTTTCAATACTTCCTTAGAGGTATGGAAA	29,30,29	0	0	NA	NA	III-A:III-A:III-A	5,6,6	6	,TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA|141aa|up_6|NC_011978.1_698151_698574_+,NA|270aa|up_2|NC_011978.1_702570_703380_-,NA|157aa|up_1|NC_011978.1_703379_703850_-,NA	NA|346aa|up_9|NC_011978.1_694204_695242_+	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides	NA|651aa|up_8|NC_011978.1_695238_697191_+	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative	NA|135aa|up_7|NC_011978.1_697710_698115_+	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|141aa|up_6|NC_011978.1_698151_698574_+	NA	cas6|251aa|up_5|NC_011978.1_698734_699487_+	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx1|537aa|up_4|NC_011978.1_699499_701110_+	cd09671, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas10|467aa|up_3|NC_011978.1_701130_702531_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	NA|270aa|up_2|NC_011978.1_702570_703380_-	NA	NA|157aa|up_1|NC_011978.1_703379_703850_-	NA	NA|114aa|up_0|NC_011978.1_703840_704182_-	pfam00226, DnaJ, DnaJ domain	cas6|243aa|down_0|NC_011978.1_705328_706057_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|405aa|down_1|NC_011978.1_706200_707415_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|339aa|down_2|NC_011978.1_707407_708424_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|down_3|NC_011978.1_708420_709203_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3HD|387aa|down_4|NC_011978.1_709205_710366_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas3|398aa|down_5|NC_011978.1_710352_711546_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|173aa|down_6|NC_011978.1_711548_712067_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|down_7|NC_011978.1_712076_713057_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|95aa|down_8|NC_011978.1_713059_713344_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|280aa|down_9|NC_011978.1_715624_716464_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	5	713422-715291	5,5,5	PILER-CR,CRISPRCasFinder,CRT	no	cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Type III-D,Type III-C,Type III-B,,Type III-A	GTTTTTATCTTCCTAAGAGGAATATGAAC,GTTTTTATCTTCCTAAGAGGAATATGAAC,GTTTTTATCTTCCTAAGAGGAATATGAAC	29,29,29	0	0	NA	NA	NA:NA:NA	27,28,28	28	,TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA,NA	NA|114aa|up_9|NC_011978.1_703840_704182_-	pfam00226, DnaJ, DnaJ domain	cas6|243aa|up_8|NC_011978.1_705328_706057_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|405aa|up_7|NC_011978.1_706200_707415_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|339aa|up_6|NC_011978.1_707407_708424_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_5|NC_011978.1_708420_709203_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3HD|387aa|up_4|NC_011978.1_709205_710366_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas3|398aa|up_3|NC_011978.1_710352_711546_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|173aa|up_2|NC_011978.1_711548_712067_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|327aa|up_1|NC_011978.1_712076_713057_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|95aa|up_0|NC_011978.1_713059_713344_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|280aa|down_0|NC_011978.1_715624_716464_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|156aa|down_1|NC_011978.1_716472_716940_-	COG1430, COG1430, Uncharacterized conserved protein [Function unknown]	NA|445aa|down_2|NC_011978.1_716957_718292_-	TIGR02630, Xylose_isomerase, xylose isomerase	NA|397aa|down_3|NC_011978.1_718399_719590_+	PRK13983, PRK13983, M20 family metallo-hydrolase	NA|183aa|down_4|NC_011978.1_719594_720143_+	cd00075, HATPase, Histidine kinase-like ATPase domain	NA|212aa|down_5|NC_011978.1_720139_720775_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|255aa|down_6|NC_011978.1_720755_721520_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|252aa|down_7|NC_011978.1_721494_722250_+	PRK13935, PRK13935, stationary phase survival protein SurE; Provisional	NA|165aa|down_8|NC_011978.1_722237_722732_+	PRK14597, PRK14597, peptide deformylase; Provisional	NA|324aa|down_9|NC_011978.1_722745_723717_+	pfam01551, Peptidase_M23, Peptidase family M23
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	6	739743-739910	6	CRISPRCasFinder	no		DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Orphan	CGGGTTTCAATACTTCCTTAGAGGTATGGAAAC	33	0	0	NA	NA	III-A	2	2	Orphan	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA|219aa|up_4|NC_011978.1_735548_736205_+,NA	NA|554aa|up_9|NC_011978.1_729686_731348_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|684aa|up_8|NC_011978.1_731347_733399_+	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|423aa|up_7|NC_011978.1_733400_734669_+	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)	NA|94aa|up_6|NC_011978.1_734683_734965_+	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown]	NA|199aa|up_5|NC_011978.1_734968_735565_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|219aa|up_4|NC_011978.1_735548_736205_+	NA	NA|153aa|up_3|NC_011978.1_736201_736660_+	COG1728, COG1728, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_2|NC_011978.1_736650_737472_-	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase	NA|299aa|up_1|NC_011978.1_737476_738373_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|243aa|up_0|NC_011978.1_738385_739114_-	TIGR03855, NAD_NadX, aspartate dehydrogenase	NA|139aa|down_0|NC_011978.1_740093_740510_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|123aa|down_1|NC_011978.1_740523_740892_+	COG1433, COG1433, Uncharacterized conserved protein [Function unknown]	NA|866aa|down_2|NC_011978.1_740921_743519_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|167aa|down_3|NC_011978.1_743550_744051_-	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|172aa|down_4|NC_011978.1_744054_744570_-	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|502aa|down_5|NC_011978.1_744670_746176_+	PRK00074, guaA, GMP synthase; Reviewed	NA|208aa|down_6|NC_011978.1_746180_746804_+	PRK01229, PRK01229, N-glycosylase/DNA lyase; Provisional	NA|309aa|down_7|NC_011978.1_746815_747742_+	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|284aa|down_8|NC_011978.1_747738_748590_+	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|270aa|down_9|NC_011978.1_748602_749412_-	pfam01501, Glyco_transf_8, Glycosyl transferase family 8
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	7	961160-961393	6,6,7	CRT,PILER-CR,CRISPRCasFinder	no		DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Orphan	TTGGTTTCCATACCTCTAAGGAAGTATTGAAACC,GGTTTCCATACCTCTAAGGAAGTATTGAAACC,GTTTCCATACCTCTAAGGAAGTATTGAAAC	34,32,30	0	0	NA	NA	III-A:III-A:III-A	3,3,3	3	Orphan	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA,NA|131aa|down_9|NC_011978.1_970094_970487_+	NA|75aa|up_9|NC_011978.1_951059_951284_+	PRK14070, PRK14070, exodeoxyribonuclease VII small subunit; Provisional	NA|609aa|up_8|NC_011978.1_951249_953076_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|110aa|up_7|NC_011978.1_953072_953402_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|529aa|up_6|NC_011978.1_953418_955005_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|539aa|up_5|NC_011978.1_955001_956618_+	sd00006, TPR, Tetratricopeptide repeat	NA|402aa|up_4|NC_011978.1_956620_957826_+	PRK04135, PRK04135, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|391aa|up_3|NC_011978.1_957822_958995_+	pfam03772, Competence, Competence protein	NA|161aa|up_2|NC_011978.1_958885_959368_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|345aa|up_1|NC_011978.1_959389_960424_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|151aa|up_0|NC_011978.1_960436_960889_-	PRK14638, PRK14638, ribosome maturation factor RimP	NA|326aa|down_0|NC_011978.1_962253_963231_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|226aa|down_1|NC_011978.1_963271_963949_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|295aa|down_2|NC_011978.1_963933_964818_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|217aa|down_3|NC_011978.1_964814_965465_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|234aa|down_4|NC_011978.1_965466_966168_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|404aa|down_5|NC_011978.1_966182_967394_+	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|387aa|down_6|NC_011978.1_967435_968596_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|359aa|down_7|NC_011978.1_968596_969673_+	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|137aa|down_8|NC_011978.1_969687_970098_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|131aa|down_9|NC_011978.1_970094_970487_+	NA
GCF_000018945.1_ASM1894v1	NC_011978	Thermotoga neapolitana DSM 4359, complete sequence	8	1152061-1152421	7,8,7	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	Orphan	GTTTCCATACCTCAAAGGAAGTATTGAAAC,GTTTCAATACTTCCTTTGAGGTATGGAAAC,GTTTCAATACTTCCTTTGAGGTATGGAAAC	30,30,30	0	0	NA	NA	III-A:III-A:III-A	5,5,5	5	Orphan	DEDDh,cas14k,cas6,csx1,cas10,cas7,cas5,cas3HD,cas3,cas4,cas1,cas2,WYL,csa3	NA|84aa|up_9|NC_011978.1_1140257_1140509_-,NA|48aa|down_2|NC_011978.1_1154396_1154540_+,NA|351aa|down_9|NC_011978.1_1161467_1162520_+	NA|84aa|up_9|NC_011978.1_1140257_1140509_-	NA	NA|182aa|up_8|NC_011978.1_1141047_1141593_-	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|487aa|up_7|NC_011978.1_1141711_1143172_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|275aa|up_6|NC_011978.1_1143564_1144389_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|60aa|up_5|NC_011978.1_1144475_1144655_+	cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose	NA|283aa|up_4|NC_011978.1_1145832_1146681_-	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|398aa|up_3|NC_011978.1_1146677_1147871_-	pfam01960, ArgJ, ArgJ family	NA|340aa|up_2|NC_011978.1_1147887_1148907_-	TIGR01850, N-acetyl-gamma-glutamyl-phosphate_reductase, N-acetyl-gamma-glutamyl-phosphate reductase, common form	NA|399aa|up_1|NC_011978.1_1148903_1150100_-	COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism]	NA|410aa|up_0|NC_011978.1_1150096_1151326_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|257aa|down_0|NC_011978.1_1152493_1153264_-	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|326aa|down_1|NC_011978.1_1153268_1154246_-	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein	NA|48aa|down_2|NC_011978.1_1154396_1154540_+	NA	NA|307aa|down_3|NC_011978.1_1154520_1155441_-	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains	NA|385aa|down_4|NC_011978.1_1155446_1156601_-	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]	NA|186aa|down_5|NC_011978.1_1156809_1157367_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|234aa|down_6|NC_011978.1_1157363_1158065_+	PRK14841, PRK14841, undecaprenyl pyrophosphate synthase; Provisional	NA|271aa|down_7|NC_011978.1_1158057_1158870_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|865aa|down_8|NC_011978.1_1158866_1161461_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|351aa|down_9|NC_011978.1_1161467_1162520_+	NA
