The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010336	Francisella philomiragia subsp. philomiragia ATCC 25017, complete sequence	2045775	138102	202237	2045775	tRNA,transposase,protease	Staphylococcus_prophage(27.78%)	56	NA	NA
WP_012279618.1|138102_139047_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_012279618.1|139670_140615_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_003015139.1|140851_141973_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.2	1.5e-31
WP_012279684.1|141972_142854_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012279685.1|142866_143670_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012279686.1|143675_144272_-	LysE family translocator	NA	NA	NA	NA	NA
WP_004288034.1|144400_144655_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_004288036.1|144685_145000_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_041268133.1|145219_145786_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_012279688.1|145969_146515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012279689.1|146685_149409_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_144402763.1|149568_150591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012279691.1|150597_151038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004288043.1|151043_151766_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_012279692.1|151969_153919_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	42.1	4.7e-113
WP_012279693.1|154120_155512_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	25.9	1.7e-08
WP_012279694.1|155512_158335_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.5	5.2e-312
WP_004288047.1|158372_158855_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_012279695.1|158891_159476_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_012279696.1|159475_161098_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_004288050.1|161084_161738_-	thiamine diphosphokinase	NA	NA	NA	NA	NA
WP_004288051.1|161799_163260_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.4	6.3e-94
WP_004288052.1|163363_164803_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.1	1.9e-55
WP_012279697.1|164968_166051_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_004288054.1|166051_167110_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_012279698.1|167119_168373_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	25.0	6.7e-28
WP_012279699.1|168378_169602_+	insulinase family protein	NA	NA	NA	NA	NA
WP_012279700.1|169602_170181_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_004288058.1|170213_170864_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_004288059.1|170922_171531_-|tRNA	tRNA-(ms[2]io[6]A)-hydroxylase	tRNA	NA	NA	NA	NA
WP_004288060.1|171643_172447_+	uridine phosphorylase	NA	NA	NA	NA	NA
WP_012279701.1|172463_172865_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_012279702.1|173174_176207_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_012279703.1|176419_177958_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_012279704.1|177972_179253_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	58.4	5.1e-100
WP_012279705.1|179353_180250_+	ROK family protein	NA	NA	NA	NA	NA
WP_012279706.1|180335_181595_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_012279707.1|181597_181801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012279708.1|181820_182225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012279709.1|182271_182505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012279710.1|182697_184479_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	A0A1V0SE00	Indivirus	35.0	5.1e-29
WP_012279711.1|184475_186125_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	A0A1V0SE00	Indivirus	29.9	1.3e-26
WP_012279618.1|186379_187324_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_012279712.1|190612_190840_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_012279713.1|190854_191364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041268064.1|191355_191874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041268065.1|191836_192319_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	33.6	7.1e-10
WP_012279714.1|192321_192567_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_012279618.1|192686_193631_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_012279715.1|193602_194574_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_012279716.1|194633_196229_-	type I restriction-modification system subunit M	NA	A0A220A2U4	Liberibacter_phage	31.3	1.4e-49
WP_012279717.1|196322_197573_-	C4-dicarboxylate transporter DctA	NA	NA	NA	NA	NA
WP_012279718.1|197713_198238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004288078.1|198260_198641_-	RidA family protein	NA	NA	NA	NA	NA
WP_012279719.1|198640_200185_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	38.1	3.4e-82
WP_012279618.1|201292_202237_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
>prophage 2
NC_010336	Francisella philomiragia subsp. philomiragia ATCC 25017, complete sequence	2045775	464852	473909	2045775		Klosneuvirus(16.67%)	8	NA	NA
WP_012279903.1|464852_466859_+	M3 family metallopeptidase	NA	A0A1V0SID3	Klosneuvirus	26.5	6.5e-49
WP_012279904.1|466951_467305_+	YraN family protein	NA	NA	NA	NA	NA
WP_012279905.1|467301_468399_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_012279906.1|468400_468892_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.5	9.1e-21
WP_012279907.1|469015_469591_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	36.9	5.6e-22
WP_012279908.1|469593_471903_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	31.3	3.1e-26
WP_012279909.1|471902_472946_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SQF5	Cyanophage	35.7	2.9e-53
WP_012279910.1|473060_473909_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	40.7	1.4e-32
>prophage 3
NC_010336	Francisella philomiragia subsp. philomiragia ATCC 25017, complete sequence	2045775	752952	762621	2045775	tRNA	Indivirus(28.57%)	9	NA	NA
WP_012280144.1|752952_754203_-	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	31.8	1.3e-26
WP_012280145.1|754732_755803_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	37.7	7.0e-50
WP_012280146.1|755795_756401_+	riboflavin synthase	NA	A0A1V0SE20	Indivirus	38.0	3.8e-21
WP_012280147.1|756393_757605_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	44.3	4.7e-87
WP_012280148.1|757608_758052_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	43.6	4.2e-25
WP_012280149.1|758055_758574_+	peptide deformylase	NA	A0A067XQZ3	Caulobacter_phage	39.8	3.4e-18
WP_012280150.1|758670_759615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012280151.1|759643_760723_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_012280152.1|760836_762621_-	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	43.2	4.2e-23
>prophage 4
NC_010336	Francisella philomiragia subsp. philomiragia ATCC 25017, complete sequence	2045775	1361926	1370084	2045775		Enterobacteria_phage(28.57%)	8	NA	NA
WP_012280619.1|1361926_1363300_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	31.0	2.7e-54
WP_012280620.1|1363339_1364479_+	GDP-mannose 4,6-dehydratase	NA	M1HAR7	Acanthocystis_turfacea_Chlorella_virus	59.4	9.5e-122
WP_012280621.1|1364525_1364810_+	four helix bundle protein	NA	NA	NA	NA	NA
WP_012280622.1|1364902_1366042_+	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	46.1	2.4e-88
WP_012280623.1|1366172_1367063_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.3	1.0e-102
WP_012280624.1|1367059_1367632_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	52.6	2.8e-37
WP_012280625.1|1367787_1368693_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D8EQE2	Escherichia_phage	39.0	1.1e-40
WP_012280626.1|1369082_1370084_+	dTDP-glucose 4,6-dehydratase	NA	K7QJG5	Escherichia_phage	49.1	4.2e-81
>prophage 5
NC_010336	Francisella philomiragia subsp. philomiragia ATCC 25017, complete sequence	2045775	1629428	1673774	2045775	tRNA,transposase,protease	Staphylococcus_prophage(26.67%)	40	NA	NA
WP_012279618.1|1629428_1630373_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_012280832.1|1630344_1630719_-	hydroxy/aromatic amino acid permease (HAAAP) family protein	NA	NA	NA	NA	NA
WP_012280833.1|1630800_1632273_-	MetQ/NlpA family lipoprotein	NA	NA	NA	NA	NA
WP_012280834.1|1632250_1633303_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.4	4.6e-30
WP_012280835.1|1633289_1633904_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_012280836.1|1634056_1635163_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	49.7	4.6e-97
WP_012280837.1|1635202_1636165_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012279618.1|1636624_1637569_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_041268112.1|1638112_1638706_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_004287530.1|1638769_1638973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012280841.1|1639117_1640341_+	MFS transporter	NA	NA	NA	NA	NA
WP_012280842.1|1640351_1641800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004287533.1|1641933_1642290_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	50.0	2.6e-09
WP_012280843.1|1642347_1644285_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_012280844.1|1644303_1645245_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	39.8	7.7e-45
WP_012280845.1|1645316_1645805_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_012280846.1|1645830_1646709_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	38.2	1.2e-39
WP_012280847.1|1646798_1648079_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_004287539.1|1648078_1648678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012280848.1|1648652_1649111_+	ribonuclease HI	NA	A0A1S5XYT5	Kurlavirus	50.7	4.8e-32
WP_012280849.1|1649113_1650145_+	asparaginase	NA	NA	NA	NA	NA
WP_012280850.1|1650232_1650937_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_012280851.1|1651010_1653359_+	DEAD/DEAH box helicase family protein	NA	A0A2P1MXB6	Escherichia_phage	23.0	7.4e-12
WP_012279618.1|1654040_1654985_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_012280853.1|1655041_1655560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012280854.1|1655890_1657114_+	type I restriction-modification system subunit S	NA	NA	NA	NA	NA
WP_041268195.1|1657433_1658048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012280856.1|1658028_1658349_+	type I restriction-modification system subunit M (methyltransferase)	NA	NA	NA	NA	NA
WP_012279618.1|1658345_1659290_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_012280858.1|1660515_1660980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012280859.1|1661132_1662449_+	trigger factor	NA	NA	NA	NA	NA
WP_004287550.1|1662474_1663080_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.3	2.2e-56
WP_012280860.1|1663104_1664358_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	5.9e-125
WP_012280861.1|1664383_1666708_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	47.7	2.9e-194
WP_004287553.1|1666793_1667066_+	HU family DNA-binding protein	NA	Q6QIE5	Burkholderia_phage	58.9	1.9e-20
WP_012280862.1|1667177_1668611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012280863.1|1668611_1669538_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_004287556.1|1669642_1669972_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_012280864.1|1670019_1671327_+	GTPase HflX	NA	NA	NA	NA	NA
WP_004287559.1|1672706_1673774_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
>prophage 6
NC_010336	Francisella philomiragia subsp. philomiragia ATCC 25017, complete sequence	2045775	1869001	1876869	2045775	transposase	Enterobacteria_phage(33.33%)	8	NA	NA
WP_012281025.1|1869001_1869568_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	73.5	6.4e-71
WP_144402771.1|1869937_1871575_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	29.5	9.6e-59
WP_012279618.1|1871616_1872561_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	34.8	7.0e-38
WP_144402770.1|1872628_1873333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012281028.1|1873434_1873848_-	DUF4158 domain-containing protein	NA	NA	NA	NA	NA
WP_012281029.1|1873844_1874414_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	46.2	8.0e-37
WP_012281031.1|1874689_1875109_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	49.3	9.1e-30
WP_012281032.1|1875288_1876869_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	37.3	2.7e-74
