The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010519	Histophilus somni 2336, complete sequence	2263857	178879	265488	2263857	transposase,tRNA,terminase,integrase,capsid,head,portal,protease,tail	Haemophilus_virus(20.69%)	86	229494:229511	260670:260687
WP_011608449.1|178879_179617_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_011608450.1|179652_180003_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_041605193.1|180137_180929_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011608452.1|180992_181994_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_143432550.1|182002_183097_-	rRNA methyltransferase	NA	NA	NA	NA	NA
WP_012340837.1|183220_184588_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_011608455.1|184617_185328_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_052292860.1|185324_187271_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_011608457.1|187306_189217_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA
WP_012340867.1|189459_190302_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012340874.1|190338_191103_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012340885.1|191078_192179_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_012340894.1|192244_192574_-	DUF413 domain-containing protein	NA	NA	NA	NA	NA
WP_012340900.1|192627_193236_-	DsbA family protein	NA	NA	NA	NA	NA
WP_012340907.1|193245_193512_-	YihD family protein	NA	NA	NA	NA	NA
WP_012340917.1|193578_194166_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_012340925.1|194284_196291_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_012340934.1|196412_197171_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_012340941.1|197192_197456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340950.1|197939_198902_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_012340959.1|198919_199576_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_011608471.1|199584_199881_-	YbeD family protein	NA	NA	NA	NA	NA
WP_012340992.1|201210_201771_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	56.0	3.1e-17
WP_012341000.1|201813_202929_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_012341009.1|202951_204856_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_012341017.1|204872_205340_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_012341025.1|205359_205668_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_011608479.1|206020_206863_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_011608480.1|206855_207746_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_012341036.1|207750_208509_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	26.3	3.9e-15
WP_012341045.1|208518_209400_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_011608483.1|209505_209835_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	52.8	5.3e-25
WP_012341065.1|209912_210575_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	56.2	9.3e-29
WP_011608485.1|210982_212512_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA	NA
WP_012341074.1|212613_213309_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_041604967.1|213229_214591_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	35.5	7.3e-36
WP_041605195.1|214693_215815_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_012341077.1|215817_216729_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_012341078.1|217016_217568_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011608492.1|218614_220303_-	solute:sodium symporter family transporter	NA	A0A219Y9P9	Aeromonas_phage	29.3	1.3e-37
WP_052292862.1|220622_222389_+	outer membrane protein assembly factor	NA	NA	NA	NA	NA
WP_012341082.1|222399_225927_+	translocation/assembly module TamB	NA	NA	NA	NA	NA
WP_012341083.1|225929_227480_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_012341084.1|227652_229488_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
229494:229511	attL	AAAAGTGCGGTGTTTTTT	NA	NA	NA	NA
WP_012341085.1|229885_231130_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.2	2.2e-127
WP_012341086.1|231145_231727_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	62.9	1.2e-59
WP_011609585.1|231812_233111_-	trigger factor	NA	NA	NA	NA	NA
WP_136122165.1|233493_234885_+	type II/IV secretion system protein	NA	NA	NA	NA	NA
WP_012341088.1|234918_236178_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_011609582.1|236247_237045_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_012341090.1|237194_238571_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_012341091.1|238613_240353_-	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.7	1.5e-33
WP_012341092.1|240844_241798_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	29.9	2.3e-28
WP_012341093.1|241900_243037_-|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	57.0	1.6e-121
WP_012341094.1|243083_243500_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	62.0	4.8e-47
WP_012341095.1|243786_244248_-|tail	phage tail protein	tail	Q94MZ1	Haemophilus_virus	41.9	8.2e-32
WP_012341096.1|244244_244697_-|head	head completion/stabilization protein	head	Q1I0Z7	Pasteurella_virus	54.0	6.3e-37
WP_012341097.1|244689_245571_-|terminase	phage small terminase subunit	terminase	Q94MZ3	Haemophilus_virus	39.1	1.2e-50
WP_012341098.1|245599_246631_-|capsid	phage major capsid protein, P2 family	capsid	Q94MZ4	Haemophilus_virus	63.7	9.2e-116
WP_012341099.1|246640_247066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341100.1|247016_247538_-|capsid	GPO family capsid scaffolding protein	capsid	Q94MZ5	Haemophilus_virus	53.9	1.6e-39
WP_012341101.1|247700_249488_+|terminase	terminase	terminase	Q94MZ6	Haemophilus_virus	67.4	9.6e-238
WP_012341102.1|249498_250527_+|portal	phage portal protein	portal	Q94MZ7	Haemophilus_virus	67.9	3.3e-121
WP_012341103.1|250582_250861_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_157857760.1|250961_251345_-	restriction endonuclease subunit S	NA	A0A1S5SA18	Streptococcus_phage	36.1	1.2e-12
WP_012341105.1|251353_252739_-	N-6 DNA methylase	NA	A0A1X9I6H1	Streptococcus_phage	40.8	2.7e-78
WP_012341106.1|252755_253286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341107.1|253300_255490_-	DUF927 domain-containing protein	NA	A0A1W6JPG0	Morganella_phage	38.4	2.7e-109
WP_012341108.1|255486_255756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341109.1|255748_256237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341111.1|256388_256667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341112.1|256735_257500_-	site-specific DNA-methyltransferase	NA	A0A0E3U2R2	Fusobacterium_phage	74.8	7.8e-112
WP_012341113.1|257510_257972_-	ash family protein	NA	NA	NA	NA	NA
WP_041604971.1|258115_258319_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012341114.1|258442_258724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041604973.1|258692_258914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341116.1|259256_259694_+	DUF4065 domain-containing protein	NA	D0UIM3	Aggregatibacter_phage	65.1	2.7e-45
WP_041604975.1|259743_259923_-	hypothetical protein	NA	Q19US2	Mannheimia_phage	62.8	3.3e-05
WP_143432501.1|260015_260078_-	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA	NA
WP_041604977.1|260225_260408_-	hypothetical protein	NA	Q19US2	Mannheimia_phage	69.5	1.3e-12
WP_012341117.1|261095_261314_-	hypothetical protein	NA	NA	NA	NA	NA
260670:260687	attR	AAAAAACACCGCACTTTT	NA	NA	NA	NA
WP_143432497.1|262157_262649_-	ImmA/IrrE family metallo-endopeptidase	NA	L7THB5	Pseudomonas_virus	33.3	2.3e-16
WP_012341119.1|262645_263011_-	helix-turn-helix transcriptional regulator	NA	L7TKV7	Pseudomonas_virus	49.2	2.7e-22
WP_012341120.1|263372_263696_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_012341122.1|263688_263988_+	putative addiction module antidote protein	NA	NA	NA	NA	NA
WP_012341123.1|264627_265488_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.0	8.6e-51
>prophage 2
NC_010519	Histophilus somni 2336, complete sequence	2263857	748860	786344	2263857	plate,transposase,terminase,capsid,head,protease,tail	Haemophilus_phage(52.94%)	51	NA	NA
WP_012341471.1|748860_750849_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A0M3LPN5	Mannheimia_phage	55.0	3.0e-187
WP_012341472.1|750852_751728_+	AAA family ATPase	NA	A0A0M3LP72	Mannheimia_phage	55.2	1.0e-83
WP_041605015.1|751737_751932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341473.1|751950_752166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341475.1|752174_752369_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_041605016.1|752365_752596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341476.1|752605_753223_+	DUF3164 family protein	NA	A0A0M3LQ92	Mannheimia_phage	61.3	3.9e-69
WP_012341477.1|753389_753710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341479.1|754403_754796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341481.1|755380_755755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341482.1|755741_756152_+	regulatory protein GemA	NA	F6MIJ6	Haemophilus_phage	43.7	5.8e-21
WP_012341483.1|756211_756706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341484.1|756890_757319_+	hypothetical protein	NA	A0A0M3LRS6	Mannheimia_phage	45.1	1.9e-27
WP_012341486.1|757401_757938_+	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	66.5	5.2e-70
WP_157857762.1|757940_758084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341487.1|758080_758323_+	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	78.8	4.6e-26
WP_012341488.1|758319_758574_+	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_012341489.1|758684_758939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341490.1|758938_759193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341491.1|759193_759697_+	DUF1804 family protein	NA	F6MIK6	Haemophilus_phage	66.5	7.3e-58
WP_012341492.1|759799_761443_+|terminase	phage terminase large subunit	terminase	B7SDN0	Haemophilus_phage	81.1	8.8e-262
WP_012341493.1|761446_763105_+	DUF935 domain-containing protein	NA	B7SDN1	Haemophilus_phage	62.4	1.4e-187
WP_012341494.1|763091_764366_+|capsid	minor capsid protein	capsid	B7SDN5	Haemophilus_phage	54.3	5.4e-126
WP_041605020.1|764500_764689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041605022.1|764693_764879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341495.1|764939_765425_+	phage virion morphogenesis protein	NA	B7SDN8	Haemophilus_phage	52.2	5.4e-34
WP_012341497.1|765685_766726_+|protease	phage protease	protease	B7SDN9	Haemophilus_phage	50.4	2.4e-71
WP_012341498.1|766730_767657_+|head	Mu-like prophage major head subunit gpT family protein	head	B7SDP1	Haemophilus_phage	62.6	2.4e-107
WP_012341499.1|767700_768171_+	hypothetical protein	NA	B7SDP3	Haemophilus_phage	62.9	3.4e-17
WP_012341500.1|768173_768608_+	DUF1320 domain-containing protein	NA	A0A0M3LP98	Mannheimia_phage	55.3	3.3e-35
WP_041605024.1|768591_769233_+	DUF1834 family protein	NA	B7SDP5	Haemophilus_phage	47.9	2.3e-48
WP_012341502.1|769229_769412_+	DUF2635 domain-containing protein	NA	A0A0M3LQM9	Mannheimia_phage	64.2	8.2e-12
WP_012341503.1|769404_770820_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A0M3LQC3	Mannheimia_phage	56.7	2.8e-139
WP_012341504.1|770829_771204_+	hypothetical protein	NA	F6MIK8	Haemophilus_phage	65.3	4.7e-38
WP_012341505.1|771203_771575_+|tail	phage tail assembly protein	tail	A0A0M3LSI2	Mannheimia_phage	43.9	8.6e-16
WP_041605026.1|771604_771790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341506.1|771837_774255_+|tail	phage tail tape measure protein	tail	A0A0M3LPB6	Mannheimia_phage	28.0	4.9e-51
WP_136121573.1|774272_775589_+	DNA circularization N-terminal domain-containing protein	NA	F6MIL2	Haemophilus_phage	40.1	6.7e-87
WP_012341509.1|775578_776724_+	hypothetical protein	NA	A0A0M3LPS4	Mannheimia_phage	69.5	4.1e-141
WP_012341510.1|776723_777380_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPA3	Mannheimia_phage	60.6	1.0e-67
WP_012341511.1|777458_777809_+	phage GP46 family protein	NA	A0A0M3LQK5	Mannheimia_phage	75.0	2.2e-45
WP_012341512.1|777822_778887_+|plate	baseplate J/gp47 family protein	plate	F6MIL6	Haemophilus_phage	64.6	7.7e-126
WP_012341513.1|778886_779474_+	DUF2313 domain-containing protein	NA	F6MIL7	Haemophilus_phage	65.6	4.8e-69
WP_012341514.1|779477_781436_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	48.2	4.5e-103
WP_012341516.1|782039_782534_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	56.8	1.3e-48
WP_075290756.1|782711_782843_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_012341517.1|782901_783660_+	DNA methyltransferase	NA	U4KJA1	Streptococcus_phage	51.4	9.6e-70
WP_012341519.1|783646_784483_+	hypothetical protein	NA	F6MIM2	Haemophilus_phage	64.7	9.1e-106
WP_012341520.1|784503_784692_-	hypothetical protein	NA	D0R0C0	Streptococcus_phage	46.6	1.8e-06
WP_041605028.1|784695_784974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341522.1|785159_786344_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.6	7.5e-13
>prophage 3
NC_010519	Histophilus somni 2336, complete sequence	2263857	997097	1030863	2263857	integrase,tRNA,terminase	Mannheimia_phage(34.38%)	46	998983:998998	1023291:1023306
WP_012341665.1|997097_998864_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	27.7	3.6e-11
998983:998998	attL	TGACCGCACTTTTTTA	NA	NA	NA	NA
WP_041605047.1|999024_999750_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	S5VMD2	Pseudomonas_phage	31.4	6.4e-23
WP_012341667.1|999787_1000636_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.7	1.1e-29
WP_012341669.1|1001038_1002094_-|integrase	site-specific integrase	integrase	A0A077KGX2	Edwardsiella_phage	37.5	3.9e-61
WP_075290674.1|1001997_1002297_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012341670.1|1002328_1003426_-	DNA cytosine methyltransferase	NA	Q6V7R9	Burkholderia_virus	51.5	1.2e-92
WP_041605049.1|1003470_1003740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341671.1|1003732_1004233_-	DUF551 domain-containing protein	NA	A0A0M3LS47	Mannheimia_phage	50.6	8.3e-38
WP_012341673.1|1005040_1005679_-	ribonuclease H-like domain-containing protein	NA	R9ZX90	Cellulophaga_phage	26.7	1.2e-09
WP_012341674.1|1005831_1006158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341675.1|1006154_1006592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341676.1|1006588_1006873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341677.1|1006959_1007799_-	phage antirepressor N-terminal domain-containing protein	NA	A0A0M3LR56	Mannheimia_phage	78.0	2.0e-52
WP_041605051.1|1008332_1008521_+	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	50.9	2.0e-08
WP_012341678.1|1008590_1009388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341680.1|1009788_1009974_+	hypothetical protein	NA	Q19US2	Mannheimia_phage	59.6	1.0e-09
WP_012341681.1|1010152_1010518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341682.1|1010619_1011249_-	hypothetical protein	NA	A0A088C400	Shewanella_sp._phage	43.4	4.9e-35
WP_012341683.1|1011245_1011908_-	AAA family ATPase	NA	K7PMI2	Enterobacteria_phage	51.2	1.3e-59
WP_012341684.1|1011971_1012604_-	KilA-N domain-containing protein	NA	A0A0P0ZCS0	Stx2-converting_phage	45.1	2.4e-13
WP_132994684.1|1012881_1013628_-	damage-inducible protein D	NA	NA	NA	NA	NA
WP_041605053.1|1014063_1014279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012341686.1|1014767_1014989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341687.1|1015000_1015189_+	DUF1508 domain-containing protein	NA	A0A2P1N580	Mycobacterium_phage	59.1	2.2e-07
WP_012341688.1|1015605_1015902_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	58.3	1.9e-26
WP_012341689.1|1015903_1016200_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	47.8	1.5e-15
WP_012341691.1|1016227_1017232_-	hypothetical protein	NA	A0A0R6PIZ6	Moraxella_phage	30.5	1.8e-31
WP_012341692.1|1017328_1018015_-	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	43.8	2.1e-39
WP_012341693.1|1018117_1018345_+	hypothetical protein	NA	A0A1I9KFF6	Aeromonas_phage	43.1	2.8e-09
WP_012341694.1|1018497_1018737_+	helix-turn-helix domain-containing protein	NA	A0A0M3LR73	Mannheimia_phage	78.4	5.9e-26
WP_011609555.1|1019547_1020240_+	replication protein P	NA	A0A077KCC8	Edwardsiella_phage	35.4	5.5e-24
WP_012341696.1|1020254_1020788_+	phage N-6-adenine-methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	64.3	6.5e-65
WP_012341697.1|1020800_1021253_+	DUF1367 family protein	NA	A0A0M3LPN2	Mannheimia_phage	82.7	1.3e-69
WP_012341698.1|1021304_1021919_-	hypothetical protein	NA	A0A0R6PGW1	Moraxella_phage	57.1	6.2e-27
WP_012341699.1|1022473_1022887_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0D4DCG1	Acinetobacter_phage	55.5	1.6e-34
WP_011609549.1|1022909_1023095_-	type II toxin-antitoxin system HicA family toxin	NA	A0A0D4DC32	Acinetobacter_phage	66.7	1.1e-14
WP_012341702.1|1023285_1023864_+	recombination protein NinG	NA	A0A0M3LTG3	Mannheimia_phage	52.4	1.6e-45
1023291:1023306	attR	TAAAAAAGTGCGGTCA	NA	NA	NA	NA
WP_041605056.1|1023853_1024258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041605264.1|1024491_1024872_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_012341704.1|1025177_1025414_+	hypothetical protein	NA	A0A0M3LR95	Mannheimia_phage	70.5	2.7e-23
WP_011609542.1|1025406_1025943_+	lysozyme	NA	Q19UR6	Mannheimia_phage	50.3	5.2e-46
WP_012341706.1|1025915_1026245_+	DUF2570 family protein	NA	NA	NA	NA	NA
WP_041604566.1|1026273_1026417_+	hypothetical protein	NA	A0A0M3LNX0	Mannheimia_phage	69.8	9.9e-13
WP_012341707.1|1026441_1027137_+|terminase	terminase	terminase	NA	NA	NA	NA
WP_011609539.1|1027136_1028684_+	hypothetical protein	NA	A0A1B1IVN4	uncultured_Mediterranean_phage	42.0	6.4e-97
WP_157857774.1|1028796_1030863_+	hypothetical protein	NA	S4S2T1	Puniceispirillum_phage	26.3	4.2e-43
>prophage 4
NC_010519	Histophilus somni 2336, complete sequence	2263857	1268417	1358855	2263857	plate,tRNA,terminase,integrase,capsid,head,holin,protease,tail	Mannheimia_phage(45.0%)	92	1297777:1297795	1323883:1323901
WP_011608850.1|1268417_1268852_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_011608851.1|1268899_1269778_-	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_011608852.1|1269810_1270680_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012340289.1|1270660_1271182_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_012340290.1|1271197_1272076_-	N-acetylmannosamine kinase	NA	NA	NA	NA	NA
WP_012340292.1|1272092_1272785_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_012340293.1|1272830_1273421_-	N-acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
WP_012340294.1|1273653_1274640_+	sialic acid TRAP transporter substrate-binding protein SiaP	NA	NA	NA	NA	NA
WP_012340295.1|1274694_1276560_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_011608859.1|1276910_1279052_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_012340296.1|1279454_1281260_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.6	5.6e-52
WP_005627617.1|1281321_1281540_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_012340297.1|1281750_1282422_+	N-acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
WP_012340298.1|1282528_1283548_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.0	2.3e-87
WP_012340299.1|1283814_1285401_+	L-lactate permease	NA	NA	NA	NA	NA
WP_011608864.1|1285480_1286212_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_012340301.1|1286213_1287626_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA	NA
WP_012340302.1|1287625_1288324_+	lactate utilization protein C	NA	NA	NA	NA	NA
WP_012340303.1|1288396_1290109_-	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_012340304.1|1290316_1291033_+	two-component system response regulator ArcA	NA	NA	NA	NA	NA
WP_012340305.1|1291211_1292192_-	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA	NA
WP_012340306.1|1292610_1295439_+	ribonuclease E	NA	NA	NA	NA	NA
WP_012340307.1|1295896_1298752_-	DNA polymerase I	NA	A0A2H4J6W7	uncultured_Caudovirales_phage	29.3	2.3e-63
1297777:1297795	attL	TTTTTTTGACCGCACTTTT	NA	NA	NA	NA
WP_012340308.1|1298959_1300972_+	DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.4	7.5e-114
WP_012340309.1|1301648_1302638_+|integrase	site-specific integrase	integrase	Q19US1	Mannheimia_phage	52.4	2.3e-84
WP_132995599.1|1302634_1302922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340312.1|1302899_1305263_-	replication endonuclease	NA	Q1I108	Pasteurella_virus	51.6	4.0e-215
WP_012340313.1|1305281_1305575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340314.1|1305571_1305925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340315.1|1305940_1306231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041605076.1|1306379_1306649_-	hypothetical protein	NA	Q19UN6	Mannheimia_phage	48.2	8.7e-18
WP_012340316.1|1306629_1306875_-	helix-turn-helix domain-containing protein	NA	Q19UN8	Mannheimia_phage	50.0	3.9e-09
WP_012340317.1|1307014_1307704_+	helix-turn-helix transcriptional regulator	NA	A0A0M3LPF9	Mannheimia_phage	40.6	1.4e-35
WP_157857766.1|1307800_1307950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340318.1|1307986_1309162_-|tail	tail protein	tail	R9QBT3	Mannheimia_phage	50.4	9.2e-104
WP_012340319.1|1309158_1309602_-|tail	phage tail protein	tail	A0A0M3LQ18	Mannheimia_phage	57.9	3.5e-40
WP_075290527.1|1309663_1309780_-|tail	GpE family phage tail protein	tail	R9QCM4	Mannheimia_phage	60.5	2.5e-06
WP_012340320.1|1309806_1310115_-|tail	phage tail assembly protein	tail	F1BUU0	Erwinia_phage	46.7	1.4e-16
WP_012340322.1|1310142_1310652_-|tail	phage major tail tube protein	tail	E5E3Q2	Burkholderia_phage	53.8	1.1e-45
WP_012340323.1|1310662_1311916_-|tail	phage tail sheath protein	tail	A4PE49	Ralstonia_virus	59.9	5.2e-137
WP_012340324.1|1312128_1312377_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_012340325.1|1312376_1312640_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012340326.1|1312854_1313043_+	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	58.2	5.5e-11
WP_012340327.1|1313045_1313522_-	hypothetical protein	NA	F6MIM0	Haemophilus_phage	56.2	5.6e-44
WP_012340328.1|1313514_1314141_-	DUF4376 domain-containing protein	NA	F6MIL9	Haemophilus_phage	58.7	2.5e-60
WP_012340329.1|1314203_1314455_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	50.6	1.2e-13
WP_012340331.1|1314791_1316891_-|tail	phage tail protein	tail	Q94MY0	Haemophilus_virus	45.2	1.1e-107
WP_012340333.1|1316936_1317491_-|tail	phage tail protein I	tail	Q19UQ4	Mannheimia_phage	54.5	1.0e-52
WP_012340334.1|1317480_1318395_-|plate	baseplate J/gp47 family protein	plate	Q19UQ5	Mannheimia_phage	61.2	2.4e-99
WP_012340335.1|1318378_1318735_-	GPW/gp25 family protein	NA	Q19UQ6	Mannheimia_phage	48.0	8.0e-19
WP_041605078.1|1318734_1319346_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	46.7	5.6e-28
WP_012340337.1|1319574_1319922_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_012340338.1|1319909_1320194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340339.1|1320348_1322847_-|tail	phage tail tape measure protein	tail	A0A2H4JE61	uncultured_Caudovirales_phage	37.2	1.0e-104
WP_012341730.1|1322980_1323358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340340.1|1323612_1324074_-	phage virion morphogenesis protein	NA	A0A0M3LNN0	Mannheimia_phage	59.7	2.2e-37
1323883:1323901	attR	TTTTTTTGACCGCACTTTT	NA	NA	NA	NA
WP_012340341.1|1324086_1324527_-|tail	phage tail protein	tail	A0A077K8R3	Ralstonia_phage	46.6	1.9e-25
WP_041605081.1|1324537_1324765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041605083.1|1324884_1325334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340344.1|1325326_1325863_-	lysozyme	NA	A0A0M3LQY4	Mannheimia_phage	51.9	2.0e-50
WP_041605085.1|1325855_1326068_-|holin	phage holin family protein	holin	Q1I0Z2	Pasteurella_virus	53.3	2.1e-06
WP_012340346.1|1326080_1326296_-|tail	tail protein X	tail	A0A0M3LPY0	Mannheimia_phage	52.3	4.4e-12
WP_012340347.1|1326295_1326808_-|head	head completion/stabilization protein	head	A0A0M3LNL8	Mannheimia_phage	56.0	3.0e-43
WP_012340348.1|1326911_1327565_-|terminase	terminase	terminase	A4JWP8	Burkholderia_virus	41.7	2.7e-36
WP_012340349.1|1327576_1328629_-|capsid	phage major capsid protein, P2 family	capsid	A0A077KEQ8	Ralstonia_phage	55.8	6.1e-91
WP_012340350.1|1328652_1329477_-|capsid	GPO family capsid scaffolding protein	capsid	Q19UT4	Mannheimia_phage	50.0	1.4e-61
WP_012340351.1|1329640_1329985_+	helix-turn-helix domain-containing protein	NA	A0A0M3LRV4	Mannheimia_phage	67.6	3.1e-36
WP_143432690.1|1330233_1333404_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_011608875.1|1333586_1334108_-	heme utilization protein HutZ	NA	NA	NA	NA	NA
WP_011608876.1|1334125_1334620_-	heme utilization cystosolic carrier protein HutX	NA	NA	NA	NA	NA
WP_012340354.1|1334822_1335452_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_143432487.1|1335573_1337412_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	41.9	1.1e-114
WP_012340356.1|1337744_1338542_+	LicD family protein	NA	A0A1V0SD50	Indivirus	48.3	2.2e-08
WP_041605088.1|1338888_1339191_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_012340357.1|1339852_1340113_-	hemin receptor, outer membrane protein	NA	NA	NA	NA	NA
WP_012340358.1|1340137_1340428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041605090.1|1340446_1340722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340359.1|1340804_1341248_+	hypothetical protein	NA	A0A2H4JEZ8	uncultured_Caudovirales_phage	50.9	8.2e-21
WP_041605092.1|1342020_1342632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340361.1|1342705_1343545_+	nucleotide-binding protein	NA	NA	NA	NA	NA
WP_012340362.1|1343735_1344005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340365.1|1344939_1345881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003033056.1|1345867_1346080_+	helix-turn-helix transcriptional regulator	NA	A0A2K5B261	Erysipelothrix_phage	55.0	5.8e-09
WP_012340368.1|1347139_1348855_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012340370.1|1350056_1350629_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_143432554.1|1351338_1351563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340373.1|1352386_1353214_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_012340374.1|1353304_1354639_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_012340375.1|1354652_1355120_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
WP_011608885.1|1355124_1356084_+	AEC family transporter	NA	NA	NA	NA	NA
WP_012340378.1|1356211_1358134_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.3	2.6e-95
WP_012340379.1|1358138_1358855_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
>prophage 5
NC_010519	Histophilus somni 2336, complete sequence	2263857	1869883	1923352	2263857	integrase,transposase	Salmonella_phage(30.0%)	48	1865839:1865898	1871299:1871832
1865839:1865898	attL	ACGCTTGGGAACAGAGGAAGTTGGGGGATTTGGCAAATTCTATAAAATCATACCCATTAT	NA	NA	NA	NA
WP_012340749.1|1869883_1870810_+|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.7	6.2e-79
WP_052292875.1|1870822_1871329_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_012340753.1|1872726_1873143_-|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	63.5	9.6e-48
1871299:1871832	attR	ATAATGGGTATGATTTTATAGAATTTGCCAAATCCCCCAACTTCCTCTGTTCCCAAGCGTAAGTTTACATAAAACAAAAAGGCTATCAAATGATTGTATGATAGCCTTAATGAGATAACTTAAATTTTTCTATTTTATACTATAATTATTTTCTCTGATTTTCCTTAGTCGCTTTTACACCACGATAGTCAAAGCTACTGGGAATTAAAATACCTATGCCTTTCGTTTCGACATCTTGCGAATCAATGTATTTAATATTAACTTCACCTATTGGATTTGCTTCTTGATAAAACACTTTTTCCCCATTCAGATAAATCCGCTTCTTGACAATCAAGAAAAAATTGCTATAAAGCACTCTATTTTTGTTCATGAAAAAAGGATATTATGTCAAAACTTTATTATCGACCTGAAATTGACGGACTGCGTGCTGTTGCTGTTTTATCCGTCATATTATTTCATCTAAATCCAACTTGGTTACCAGGCGGTTTTTTAGGCGTTGATATTTTCTTTGTTATTTCCGGCTATTTAATTACT	NA	NA	NA	NA
WP_012340754.1|1873189_1874326_+|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	57.0	1.0e-120
WP_052292876.1|1874482_1874896_+	ash family protein	NA	NA	NA	NA	NA
WP_011608684.1|1875025_1875286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340757.1|1875422_1875914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340759.1|1875906_1876092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012340754.1|1876214_1877351_-|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	57.0	1.0e-120
WP_012340753.1|1877397_1877814_+|transposase	IS200/IS605 family transposase	transposase	A0A1S5RHE3	Helicobacter_phage	63.5	9.6e-48
WP_012340760.1|1877973_1878402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041605126.1|1878575_1878857_-	barstar family protein	NA	NA	NA	NA	NA
WP_012340762.1|1879769_1880156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340764.1|1880375_1880621_-	MafI family immunity protein	NA	NA	NA	NA	NA
WP_012340765.1|1880625_1882686_-	EndoU domain-containing protein	NA	NA	NA	NA	NA
WP_041605130.1|1882835_1883054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041605132.1|1883252_1883603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340766.1|1883602_1884052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157857769.1|1884172_1884304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340768.1|1884362_1884803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081376837.1|1884811_1885915_-	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA	NA
WP_157857775.1|1887063_1887288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075290748.1|1887520_1887868_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_041605134.1|1887842_1888067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340772.1|1888066_1888423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340773.1|1888674_1888926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080514403.1|1888922_1889678_-	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA	NA
WP_041605136.1|1890231_1890447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157857770.1|1890443_1892558_-	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA	NA
WP_012340776.1|1892582_1892975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340777.1|1892974_1893256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075290752.1|1893294_1893546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012340780.1|1893784_1902019_-	DNA/RNA non-specific endonuclease	NA	A0A0R6PJK4	Moraxella_phage	38.1	1.6e-48
WP_012340783.1|1902930_1903641_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	57.1	2.0e-61
WP_012340784.1|1903823_1904609_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_012340785.1|1904617_1905253_+	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_041605323.1|1905252_1906887_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A0P0CRP3	Ostreococcus_lucimarinus_virus	29.0	3.2e-38
WP_011608702.1|1906991_1907213_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA	NA
WP_012340787.1|1907216_1907771_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA	NA
WP_012340789.1|1907767_1908505_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA	NA
WP_011608705.1|1908570_1909593_+	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_041605325.1|1909649_1910831_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_012340791.1|1910871_1911378_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_012340792.1|1911658_1913665_+	transketolase	NA	NA	NA	NA	NA
WP_012340793.1|1913857_1914580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157857776.1|1914725_1914884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011608709.1|1919527_1921156_+	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	50.0	5.6e-152
WP_012340754.1|1922215_1923352_-|transposase	transposase	transposase	A0A1B0VCD8	Salmonella_phage	57.0	1.0e-120
