assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000019465.1_ASM1946v1	NC_010465	Yersinia pseudotuberculosis YPIII, complete genome	1	1629337-1629448	1	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	TTTGAAGAAAATTCCTAATGGTTAATTAAT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|234aa|up_5|NC_010465.1_1621531_1622233_-,NA	NA|371aa|up_9|NC_010465.1_1616040_1617153_+	PRK10760, PRK10760, murein hydrolase B; Provisional	NA|201aa|up_8|NC_010465.1_1618394_1618997_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|161aa|up_7|NC_010465.1_1619369_1619852_-	COG5435, COG5435, Uncharacterized conserved protein [Function unknown]	NA|561aa|up_6|NC_010465.1_1619848_1621531_-	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|234aa|up_5|NC_010465.1_1621531_1622233_-	NA	NA|446aa|up_4|NC_010465.1_1622229_1623567_-	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc)	NA|344aa|up_3|NC_010465.1_1623606_1624638_-	pfam00419, Fimbrial, Fimbrial protein	NA|398aa|up_2|NC_010465.1_1624644_1625838_-	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|342aa|up_1|NC_010465.1_1625936_1626962_-	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|627aa|up_0|NC_010465.1_1626961_1628842_-	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and    vesicular transport]	NA|886aa|down_0|NC_010465.1_1629625_1632283_+	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|182aa|down_1|NC_010465.1_1632493_1633039_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|260aa|down_2|NC_010465.1_1633177_1633957_+	PRK09926, PRK09926, fimbrial chaperone	NA|891aa|down_3|NC_010465.1_1634084_1636757_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|203aa|down_4|NC_010465.1_1636741_1637350_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|175aa|down_5|NC_010465.1_1637455_1637980_+	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|501aa|down_6|NC_010465.1_1638003_1639506_+	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|162aa|down_7|NC_010465.1_1639838_1640324_+	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion,    and vesicular transport]	NA|180aa|down_8|NC_010465.1_1640597_1641137_+	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|450aa|down_9|NC_010465.1_1641140_1642490_+	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCF_000019465.1_ASM1946v1	NC_010465	Yersinia pseudotuberculosis YPIII, complete genome	2	1821347-1824138	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Type I-F	TAGTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	30,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	43,46,46,43	46	TypeI-F	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|372aa|up_2|NC_010465.1_1816778_1817894_+,NA|425aa|up_1|NC_010465.1_1817932_1819207_+,NA|70aa|down_9|NC_010465.1_1835937_1836147_+	NA|463aa|up_9|NC_010465.1_1808676_1810065_-	PRK15414, PRK15414, phosphomannomutase	NA|347aa|up_8|NC_010465.1_1810081_1811122_-	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|429aa|up_7|NC_010465.1_1811393_1812680_+	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|292aa|up_6|NC_010465.1_1812788_1813664_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|275aa|up_5|NC_010465.1_1813664_1814489_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|352aa|up_4|NC_010465.1_1814635_1815691_+	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|313aa|up_3|NC_010465.1_1815717_1816656_+	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|372aa|up_2|NC_010465.1_1816778_1817894_+	NA	NA|425aa|up_1|NC_010465.1_1817932_1819207_+	NA	NA|416aa|up_0|NC_010465.1_1819764_1821012_-	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	cas1|329aa|down_0|NC_010465.1_1824491_1825478_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1096aa|down_1|NC_010465.1_1825474_1828762_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|449aa|down_2|NC_010465.1_1828917_1830264_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|317aa|down_3|NC_010465.1_1830260_1831211_+	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|335aa|down_4|NC_010465.1_1831228_1832233_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NC_010465.1_1832243_1832798_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|340aa|down_6|NC_010465.1_1832875_1833895_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|168aa|down_7|NC_010465.1_1833905_1834409_-	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|453aa|down_8|NC_010465.1_1834455_1835814_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|70aa|down_9|NC_010465.1_1835937_1836147_+	NA
GCF_000019465.1_ASM1946v1	NC_010465	Yersinia pseudotuberculosis YPIII, complete genome	3	2756276-2758104	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTNCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGTAGCTTAGAAA	28,28,28	1	1	2756364-2756395	NC_010465.1_1349824-1349855	I-F:I-F:I-F	30,30,29	30	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|47aa|up_9|NC_010465.1_2742854_2742995_-,NA|72aa|down_1|NC_010465.1_2759979_2760195_-,NA|16aa|down_6|NC_010465.1_2766423_2766471_+	NA|47aa|up_9|NC_010465.1_2742854_2742995_-	NA	NA|426aa|up_8|NC_010465.1_2743106_2744384_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|281aa|up_7|NC_010465.1_2744415_2745258_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|up_6|NC_010465.1_2745305_2746046_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|142aa|up_5|NC_010465.1_2746508_2746934_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|467aa|up_4|NC_010465.1_2746942_2748343_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|1076aa|up_3|NC_010465.1_2749286_2752514_+	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|106aa|up_2|NC_010465.1_2752657_2752975_-	PRK05423, PRK05423, DUF496 family protein	NA|380aa|up_1|NC_010465.1_2753408_2754548_-	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	DEDDh|477aa|up_0|NC_010465.1_2754810_2756241_+	PRK11779, sbcB, exonuclease I; Provisional	NA|464aa|down_0|NC_010465.1_2758598_2759990_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|72aa|down_1|NC_010465.1_2759979_2760195_-	NA	NA|364aa|down_2|NC_010465.1_2760448_2761540_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|519aa|down_3|NC_010465.1_2761825_2763382_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|down_4|NC_010465.1_2763378_2764374_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|276aa|down_5|NC_010465.1_2765220_2766048_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|16aa|down_6|NC_010465.1_2766423_2766471_+	NA	NA|300aa|down_7|NC_010465.1_2766761_2767661_+	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|444aa|down_8|NC_010465.1_2767664_2768996_+	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|383aa|down_9|NC_010465.1_2768998_2770147_+	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional
GCF_000019465.1_ASM1946v1	NC_010465	Yersinia pseudotuberculosis YPIII, complete genome	4	3354024-3354107	4	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	TAAGCTGCCTGTACGGCAGTGAAC	24	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA,NA|281aa|down_3|NC_010465.1_3364144_3364987_+,NA|84aa|down_6|NC_010465.1_3366636_3366888_-,NA|80aa|down_7|NC_010465.1_3366926_3367166_-,NA|41aa|down_9|NC_010465.1_3370015_3370138_+	NA|307aa|up_9|NC_010465.1_3340061_3340982_-	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|657aa|up_8|NC_010465.1_3341188_3343159_-	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|378aa|up_7|NC_010465.1_3343207_3344341_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|343aa|up_6|NC_010465.1_3344364_3345393_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|516aa|up_5|NC_010465.1_3345404_3346952_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|310aa|up_4|NC_010465.1_3347000_3347930_-	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|329aa|up_3|NC_010465.1_3348037_3349024_-	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase	NA|649aa|up_2|NC_010465.1_3349317_3351264_-	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|509aa|up_1|NC_010465.1_3351277_3352804_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|285aa|up_0|NC_010465.1_3353161_3354016_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|2005aa|down_0|NC_010465.1_3354579_3360594_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|771aa|down_1|NC_010465.1_3360701_3363014_+	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|82aa|down_2|NC_010465.1_3363226_3363472_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|281aa|down_3|NC_010465.1_3364144_3364987_+	NA	NA|134aa|down_4|NC_010465.1_3364994_3365396_+	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|160aa|down_5|NC_010465.1_3366133_3366613_-	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|84aa|down_6|NC_010465.1_3366636_3366888_-	NA	NA|80aa|down_7|NC_010465.1_3366926_3367166_-	NA	NA|639aa|down_8|NC_010465.1_3367975_3369892_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|41aa|down_9|NC_010465.1_3370015_3370138_+	NA
GCF_000019465.1_ASM1946v1	NC_010465	Yersinia pseudotuberculosis YPIII, complete genome	5	4522966-4523077	5	CRISPRCasFinder	no		DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DinG,csa3	NA|52aa|up_0|NC_010465.1_4522708_4522864_-,NA	NA|443aa|up_9|NC_010465.1_4507313_4508642_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_8|NC_010465.1_4508717_4510526_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_7|NC_010465.1_4510691_4511309_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|784aa|up_6|NC_010465.1_4511530_4513882_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_5|NC_010465.1_4514620_4515994_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|258aa|up_4|NC_010465.1_4516160_4516934_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_3|NC_010465.1_4517116_4518121_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|390aa|up_2|NC_010465.1_4518365_4519535_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_1|NC_010465.1_4519908_4522545_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|52aa|up_0|NC_010465.1_4522708_4522864_-	NA	NA|295aa|down_0|NC_010465.1_4523438_4524323_-	PRK09432, metF, methylenetetrahydrofolate reductase	NA|812aa|down_1|NC_010465.1_4524555_4526991_-	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|387aa|down_2|NC_010465.1_4526993_4528154_-	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional	NA|106aa|down_3|NC_010465.1_4528531_4528849_+	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|152aa|down_4|NC_010465.1_4529197_4529653_+	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|72aa|down_5|NC_010465.1_4530177_4530393_-	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|733aa|down_6|NC_010465.1_4530645_4532844_+	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|343aa|down_7|NC_010465.1_4533196_4534225_+	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional	NA|282aa|down_8|NC_010465.1_4534290_4535136_+	PRK12757, PRK12757, cell division protein FtsN; Provisional	NA|175aa|down_9|NC_010465.1_4535235_4535760_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV
