assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000019485.1_ASM1948v1	NC_010480	Synechococcus sp. PCC 7002 plasmid pAQ6, complete sequence	1	54528-61299	1,1,2,1,2,3,3,4,5,6	CRISPRCasFinder,CRT,CRT,PILER-CR,PILER-CR,PILER-CR,CRT,PILER-CR,PILER-CR,PILER-CR	no	WYL,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	cas4,WYL,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas2,cas1,csx18	Type III-A,Type III-D,Type III-B,Type III-C	GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAACNNNNN,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC,GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC	36,36,36,36,36,36,41,36,36,36	0	0	NA	NA	NA:NA:NA:NA:NA:NA:NA:NA:NA:NA	88,130,130,78,78,78,130,78,78,78	130	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C	csa3,cas3,DinG,WYL,cas6,cas8b3,cas7,cas5,cas1,cas2,cas14j,cas4,csc1gr5,csc2gr7,cas10d,RT,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx18	cmr5gr11|132aa|up_8|NC_010480.1_46522_46918_-,NA|113aa|up_4|NC_010480.1_52194_52533_-,NA|75aa|up_3|NC_010480.1_52529_52754_-,NA|234aa|up_2|NC_010480.1_52756_53458_-,NA|112aa|up_1|NC_010480.1_53530_53866_-,NA|77aa|up_0|NC_010480.1_54223_54454_-,csx18|99aa|down_2|NC_010480.1_62738_63035_-,NA|66aa|down_3|NC_010480.1_63265_63463_-,NA|230aa|down_6|NC_010480.1_66450_67140_-,NA|58aa|down_7|NC_010480.1_68500_68674_-,NA|132aa|down_8|NC_010480.1_68739_69135_-	cmr6gr7|649aa|up_9|NC_010480.1_44556_46503_-	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6	cmr5gr11|132aa|up_8|NC_010480.1_46522_46918_-	NA	cmr4gr7|266aa|up_7|NC_010480.1_46967_47765_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|369aa|up_6|NC_010480.1_47827_48934_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|984aa|up_5|NC_010480.1_48946_51898_-	pfam12469, DUF3692, CRISPR-associated protein	NA|113aa|up_4|NC_010480.1_52194_52533_-	NA	NA|75aa|up_3|NC_010480.1_52529_52754_-	NA	NA|234aa|up_2|NC_010480.1_52756_53458_-	NA	NA|112aa|up_1|NC_010480.1_53530_53866_-	NA	NA|77aa|up_0|NC_010480.1_54223_54454_-	NA	cas2|94aa|down_0|NC_010480.1_61477_61759_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|329aa|down_1|NC_010480.1_61755_62742_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csx18|99aa|down_2|NC_010480.1_62738_63035_-	NA	NA|66aa|down_3|NC_010480.1_63265_63463_-	NA	WYL|409aa|down_4|NC_010480.1_63782_65009_+	pfam13280, WYL, WYL domain	NA|394aa|down_5|NC_010480.1_65264_66446_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|230aa|down_6|NC_010480.1_66450_67140_-	NA	NA|58aa|down_7|NC_010480.1_68500_68674_-	NA	NA|132aa|down_8|NC_010480.1_68739_69135_-	NA	NA|197aa|down_9|NC_010480.1_69170_69761_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]
GCF_000019485.1_ASM1948v1	NC_010475	Synechococcus sp. PCC 7002, complete sequence	1	1864677-1865652	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas6,cas3,cas8b3,cas7,cas5,cas1,cas2	csa3,cas3,DinG,WYL,cas6,cas8b3,cas7,cas5,cas1,cas2,cas14j	Unclear	GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC,GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC,GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC	36,36,36	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B:I-A,I-B,II-B	13,13,13	13	Unclear	csa3,cas3,DinG,WYL,cas6,cas8b3,cas7,cas5,cas1,cas2,cas14j,cas4,csc1gr5,csc2gr7,cas10d,RT,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx18	NA|77aa|up_4|NC_010475.1_1861120_1861351_+,NA	WYL|326aa|up_9|NC_010475.1_1854771_1855749_+	pfam13280, WYL, WYL domain	cas6|222aa|up_8|NC_010475.1_1855749_1856415_+	pfam09559, Cas6, Cas6 Crispr	cas3|764aa|up_7|NC_010475.1_1856404_1858696_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8b3|503aa|up_6|NC_010475.1_1858692_1860201_+	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype	cas7|287aa|up_5|NC_010475.1_1860243_1861104_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|77aa|up_4|NC_010475.1_1861120_1861351_+	NA	NA|129aa|up_3|NC_010475.1_1861347_1861734_+	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	cas5|212aa|up_2|NC_010475.1_1861750_1862386_+	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas1|553aa|up_1|NC_010475.1_1862466_1864125_+	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN	cas2|98aa|up_0|NC_010475.1_1864127_1864421_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|156aa|down_0|NC_010475.1_1866010_1866478_+	COG2149, COG2149, Predicted membrane protein [Function unknown]	NA|197aa|down_1|NC_010475.1_1866639_1867230_-	pfam04755, PAP_fibrillin, PAP_fibrillin	NA|375aa|down_2|NC_010475.1_1867288_1868413_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|319aa|down_3|NC_010475.1_1868603_1869560_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|569aa|down_4|NC_010475.1_1869582_1871289_+	PRK13981, PRK13981, NAD synthetase; Provisional	NA|253aa|down_5|NC_010475.1_1871304_1872063_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|193aa|down_6|NC_010475.1_1872092_1872671_-	pfam10719, ComFB, Late competence development protein ComFB	NA|213aa|down_7|NC_010475.1_1872849_1873488_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|737aa|down_8|NC_010475.1_1873570_1875781_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|237aa|down_9|NC_010475.1_1875911_1876622_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
GCF_000019485.1_ASM1948v1	NC_010478	Synechococcus sp. PCC 7002 plasmid pAQ4, complete sequence	1	12085-15035	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL	cas2,cas1,cas4,cas6,csc1gr5,csc2gr7,cas10d,cas3,WYL	Type I-D	GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG,GTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAAG,GTTTCAGTCCCGTANTCGGGATTTAGTGGTTGGAAAG	37,37,37	0	0	NA	NA	NA:NA:NA	40,40,40	40	TypeI-D	csa3,cas3,DinG,WYL,cas6,cas8b3,cas7,cas5,cas1,cas2,cas14j,cas4,csc1gr5,csc2gr7,cas10d,RT,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csx18	NA|167aa|up_5|NC_010478.1_8733_9234_-,NA|133aa|up_4|NC_010478.1_9245_9644_-,NA|110aa|up_2|NC_010478.1_10935_11265_+,NA|89aa|down_8|NC_010478.1_24960_25227_-	NA|208aa|up_9|NC_010478.1_4772_5396_-	pfam02979, NHase_alpha, Nitrile hydratase, alpha chain	NA|249aa|up_8|NC_010478.1_5408_6155_-	pfam02211, NHase_beta, Nitrile hydratase beta subunit	NA|170aa|up_7|NC_010478.1_6221_6731_-	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|319aa|up_6|NC_010478.1_6760_7717_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|167aa|up_5|NC_010478.1_8733_9234_-	NA	NA|133aa|up_4|NC_010478.1_9245_9644_-	NA	NA|329aa|up_3|NC_010478.1_9654_10641_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|110aa|up_2|NC_010478.1_10935_11265_+	NA	NA|133aa|up_1|NC_010478.1_11278_11677_-	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|101aa|up_0|NC_010478.1_11657_11960_-	pfam09907, HigB_toxin, HigB_toxin, RelE-like toxic component of a toxin-antitoxin system	cas2|98aa|down_0|NC_010478.1_15247_15541_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|down_1|NC_010478.1_15537_16515_-	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO	cas4|193aa|down_2|NC_010478.1_16517_17096_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas6|261aa|down_3|NC_010478.1_17100_17883_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csc1gr5|252aa|down_4|NC_010478.1_17875_18631_-	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1	csc2gr7|330aa|down_5|NC_010478.1_18700_19690_-	pfam18320, Csc2, Csc2 Crispr	cas10d|974aa|down_6|NC_010478.1_19734_22656_-	cd09712, Cas10d_I-D, CRISPR/Cas system-associated protein Cas10d	cas3|715aa|down_7|NC_010478.1_22669_24814_-	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain	NA|89aa|down_8|NC_010478.1_24960_25227_-	NA	WYL|321aa|down_9|NC_010478.1_25578_26541_+	pfam13280, WYL, WYL domain
