The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010520	Clostridium botulinum A3 str. Loch Maree, complete sequence	3992906	1616398	1645663	3992906	portal,capsid,terminase,integrase,head,protease,tail	Clostridium_phage(76.47%)	36	1618302:1618320	1634020:1634038
WP_012344517.1|1616398_1617361_+|integrase	tyrosine-type recombinase/integrase	integrase	A5X9F3	Aeromonas_virus	27.8	2.3e-07
WP_041173412.1|1617360_1617831_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
1618302:1618320	attL	AATATGTTTAATAAAAATA	NA	NA	NA	NA
WP_012343068.1|1618304_1619483_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012342355.1|1619623_1621045_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003362257.1|1621167_1621371_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012343574.1|1621650_1621956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012342425.1|1621948_1622107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012343351.1|1622239_1622896_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012342087.1|1623361_1623520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012344382.1|1623566_1625072_+	DUF3102 domain-containing protein	NA	A0A2H4J025	uncultured_Caudovirales_phage	47.0	4.7e-20
WP_012344460.1|1625168_1628546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012343749.1|1628660_1628837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012343973.1|1628861_1631048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012344935.1|1632183_1632882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012344229.1|1633177_1633693_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_012342640.1|1633752_1633995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012342058.1|1634022_1634211_+	hypothetical protein	NA	NA	NA	NA	NA
1634020:1634038	attR	AATATGTTTAATAAAAATA	NA	NA	NA	NA
WP_012343006.1|1634283_1634496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012342305.1|1634564_1634747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012343207.1|1634871_1635117_+	hypothetical protein	NA	A0A2H4J8H2	uncultured_Caudovirales_phage	46.4	3.9e-09
WP_012342512.1|1635236_1635719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012344706.1|1635767_1636349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041173413.1|1636558_1637026_+	hypothetical protein	NA	Q0SPJ9	Clostridium_phage	43.3	1.7e-24
WP_012342735.1|1637171_1637657_+|terminase	phage terminase small subunit P27 family	terminase	A0A1G5SA54	Enterococcus_phage	35.2	1.2e-17
WP_012342050.1|1637653_1639345_+|terminase	terminase	terminase	A0A0A7RUM0	Clostridium_phage	65.6	1.5e-208
WP_012099876.1|1639368_1639551_+	hypothetical protein	NA	A0A0A7RUH2	Clostridium_phage	70.4	2.2e-12
WP_012343508.1|1639594_1640845_+|portal	phage portal protein	portal	A0A0A7RUE7	Clostridium_phage	80.1	9.6e-184
WP_041173414.1|1640834_1641563_+|protease	Clp protease ClpP	protease	A0A0A7RUD3	Clostridium_phage	84.6	2.0e-109
WP_012344909.1|1641636_1642869_+|capsid	phage major capsid protein	capsid	Q0SPK4	Clostridium_phage	50.0	5.3e-94
WP_012343939.1|1642952_1643246_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A0A7RWM0	Clostridium_phage	44.6	9.8e-15
WP_012344626.1|1643235_1643604_+|head	phage head closure protein	head	A0A0A7RUH8	Clostridium_phage	61.2	5.3e-34
WP_012342458.1|1643604_1643964_+	hypothetical protein	NA	A0A0A7RUF1	Clostridium_phage	82.9	5.4e-47
WP_012343196.1|1643979_1644336_+	hypothetical protein	NA	A0A0A7S158	Clostridium_phage	82.8	3.3e-49
WP_012343225.1|1644398_1644980_+|tail	tail protein	tail	A0A0A7RUI3	Clostridium_phage	73.7	1.3e-79
WP_012344141.1|1645037_1645430_+	hypothetical protein	NA	A0A0A7RUF5	Clostridium_phage	64.8	1.6e-36
WP_012341857.1|1645543_1645663_+	hypothetical protein	NA	A0A0A7RUE3	Clostridium_phage	74.4	1.0e-10
>prophage 2
NC_010520	Clostridium botulinum A3 str. Loch Maree, complete sequence	3992906	1795009	1802024	3992906		uncultured_phage(33.33%)	8	NA	NA
WP_012343377.1|1795009_1795954_-	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	30.0	5.1e-12
WP_012341855.1|1796539_1797535_+	2-hydroxyacyl-CoA dehydratase	NA	NA	NA	NA	NA
WP_012344644.1|1797661_1798423_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA	NA
WP_011949100.1|1798440_1798872_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	32.4	4.0e-12
WP_012342255.1|1798873_1799539_+	putative 7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	44.1	2.2e-38
WP_012343166.1|1799542_1800133_+	GTP cyclohydrolase I FolE	NA	S4U0J3	uncultured_phage	53.4	9.8e-46
WP_012343529.1|1800316_1800976_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	3.9e-59
WP_012344854.1|1801079_1802024_+	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	39.8	5.4e-14
>prophage 3
NC_010520	Clostridium botulinum A3 str. Loch Maree, complete sequence	3992906	2099541	2152283	3992906	portal,capsid,holin,plate,terminase,integrase,tail,tRNA	Clostridium_phage(35.71%)	55	2092576:2092594	2161954:2161972
2092576:2092594	attL	AATATAATTGTAATATTCT	NA	NA	NA	NA
WP_012344766.1|2099541_2101515_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012342472.1|2101514_2102645_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012342966.1|2102797_2103802_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_012343651.1|2105342_2106218_-	DUF3037 domain-containing protein	NA	NA	NA	NA	NA
WP_012344591.1|2106186_2107176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012341838.1|2107405_2108230_-	glycosyl hydrolase	NA	D9ZNF3	Clostridium_phage	44.1	1.2e-46
WP_012342713.1|2108269_2108689_-|holin	phage holin family protein	holin	D2XPZ9	Bacillus_virus	41.4	8.2e-23
WP_012343790.1|2108769_2108910_-	XkdX family protein	NA	NA	NA	NA	NA
WP_012344745.1|2108911_2109106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012343782.1|2109125_2111795_-	hypothetical protein	NA	I1TJW8	Clostridium_phage	32.4	3.7e-116
WP_012344563.1|2111796_2113161_-|plate	BppU family phage baseplate upper protein	plate	A0A0A7S181	Clostridium_phage	80.3	2.4e-87
WP_041173424.1|2113176_2114844_-|tail	phage tail protein	tail	A0A0A7RUI9	Clostridium_phage	42.3	8.0e-77
WP_012342703.1|2114843_2115521_-|tail	phage tail family protein	tail	A0A0A7RWN1	Clostridium_phage	41.6	6.8e-43
WP_143708415.1|2115520_2118055_-|tail	phage tail tape measure protein	tail	A0A0H4TEZ5	Erysipelothrix_phage	54.8	9.9e-87
WP_012343310.1|2118421_2118907_-	hypothetical protein	NA	A0A0K2CP90	Brevibacillus_phage	36.6	2.4e-10
WP_012342550.1|2118963_2119557_-	bacteriophage Gp15 family protein	NA	A0A1J1J8Y5	Escherichia_phage	60.9	2.5e-65
WP_012344540.1|2119556_2119901_-	hypothetical protein	NA	A0A1J1JCF3	Escherichia_phage	48.3	3.8e-18
WP_012344085.1|2119900_2120410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012342353.1|2120410_2120845_-	hypothetical protein	NA	A0A1J1J8Y6	Escherichia_phage	55.2	7.7e-40
WP_012342624.1|2120841_2121186_-	hypothetical protein	NA	F6K8R4	Clostridium_phage	42.6	3.3e-17
WP_012343812.1|2121185_2121596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012344926.1|2121597_2121858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012342631.1|2121903_2122875_-	hypothetical protein	NA	D2J006	Enterococcus_phage	36.0	3.4e-51
WP_012343064.1|2122894_2123527_-	DUF4355 domain-containing protein	NA	A0A1L2K2N1	Aeribacillus_phage	36.5	5.2e-21
WP_012344219.1|2123795_2124404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012344407.1|2124612_2125335_-|capsid	minor capsid protein	capsid	NA	NA	NA	NA
WP_012343334.1|2125334_2126603_-|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	51.9	3.6e-114
WP_012342981.1|2126606_2128403_-|terminase	terminase	terminase	A0A1V0DZW7	Clostridioides_phage	36.9	1.9e-108
WP_012342024.1|2128485_2129529_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_012342516.1|2129615_2130278_-	recombinase family protein	NA	NA	NA	NA	NA
WP_012343021.1|2130524_2130938_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012343452.1|2131100_2131544_-	xanthine dehydrogenase	NA	NA	NA	NA	NA
WP_012344907.1|2131831_2134423_-	DNA primase	NA	NA	NA	NA	NA
WP_012342043.1|2134452_2135037_-	ERCC4 domain-containing protein	NA	A0A2D1GQA7	Lysinibacillus_phage	44.2	6.1e-32
WP_012343475.1|2135238_2135556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012342098.1|2135787_2135940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012343157.1|2135969_2136494_-	hypothetical protein	NA	A0MN47	Thermus_phage	36.9	2.1e-31
WP_012343667.1|2136560_2136971_-	single-stranded DNA-binding protein	NA	Q8SBL5	Clostridium_phage	47.5	2.9e-28
WP_012344554.1|2136974_2137601_-	HD domain-containing protein	NA	A0A2H4J8L1	uncultured_Caudovirales_phage	40.2	4.0e-37
WP_012341989.1|2137614_2138328_-	MBL fold metallo-hydrolase	NA	A8ATK9	Listeria_phage	43.2	6.9e-46
WP_012342500.1|2138327_2139248_-	recombinase RecT	NA	A0A0A7RUP3	Clostridium_phage	52.8	4.6e-66
WP_012342811.1|2139249_2141187_-	AAA family ATPase	NA	A8ATK7	Listeria_phage	36.6	7.6e-71
WP_012343219.1|2141350_2141683_-	hypothetical protein	NA	A0A0A7S0N7	Clostridium_phage	42.9	5.2e-12
WP_012343524.1|2141732_2142002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012344340.1|2142018_2142189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012344459.1|2142202_2142496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012342291.1|2142515_2143274_-	hypothetical protein	NA	Q332L4	Clostridium_botulinum_C_phage	37.9	1.8e-15
WP_012343393.1|2143305_2143518_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012344120.1|2143754_2144357_+	helix-turn-helix transcriptional regulator	NA	A0A0A7RUJ9	Clostridium_phage	28.6	2.7e-11
WP_012343582.1|2144406_2144823_+	ImmA/IrrE family metallo-endopeptidase	NA	I3VYZ2	Thermoanaerobacterium_phage	30.9	3.1e-06
WP_012344328.1|2145381_2146455_+|integrase	site-specific integrase	integrase	A0A0U3U8Y8	Bacillus_phage	29.7	1.1e-21
WP_012341813.1|2147594_2148668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012343112.1|2148668_2149490_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_012342778.1|2149743_2151474_+	fibronectin/fibrinogen-binding protein	NA	NA	NA	NA	NA
WP_012343708.1|2151542_2152283_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
2161954:2161972	attR	AATATAATTGTAATATTCT	NA	NA	NA	NA
>prophage 4
NC_010520	Clostridium botulinum A3 str. Loch Maree, complete sequence	3992906	3127136	3136568	3992906		Synechococcus_phage(28.57%)	7	NA	NA
WP_012343467.1|3127136_3128636_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	46.9	7.2e-69
WP_012344982.1|3128847_3129465_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.8	1.2e-25
WP_012342734.1|3129591_3130587_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	43.7	4.5e-67
WP_012343183.1|3130647_3132096_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.7	3.0e-56
WP_012342253.1|3132187_3132892_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SLB8	Cyanophage	43.2	5.1e-41
WP_012343631.1|3132891_3133371_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	50.0	5.7e-28
WP_012343120.1|3134012_3136568_-	selenium-dependent xanthine dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	32.0	1.1e-11
>prophage 5
NC_010520	Clostridium botulinum A3 str. Loch Maree, complete sequence	3992906	3282730	3305450	3992906		Clostridium_phage(81.82%)	28	NA	NA
WP_012344809.1|3282730_3283513_-	hypothetical protein	NA	A0A218M352	Acidovorax_phage	33.0	6.5e-05
WP_012342396.1|3283603_3284689_-	hypothetical protein	NA	A0A0A7RU66	Clostridium_phage	69.5	3.9e-141
WP_012344036.1|3284700_3285699_-	hypothetical protein	NA	A0A0A7RW91	Clostridium_phage	72.6	6.8e-140
WP_003360052.1|3285710_3285965_-	hypothetical protein	NA	A0A0A7S0T0	Clostridium_phage	81.0	1.1e-33
WP_012341799.1|3285970_3287866_-	hypothetical protein	NA	A0A0A7RU09	Clostridium_phage	54.0	1.6e-126
WP_012342661.1|3287880_3289134_-	hypothetical protein	NA	A0A0A7RU28	Clostridium_phage	78.4	2.5e-192
WP_012343583.1|3289156_3290137_-	hypothetical protein	NA	A0A0A7RU61	Clostridium_phage	61.6	2.5e-110
WP_012344510.1|3290138_3291497_-	caspase family protein	NA	A0A0A7RW86	Clostridium_phage	73.0	2.6e-73
WP_012344654.1|3291511_3291853_-	hypothetical protein	NA	A0A0A7S0S4	Clostridium_phage	54.3	6.1e-16
WP_012343831.1|3291865_3292951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012342015.1|3292937_3293372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012342916.1|3293384_3294950_-	membrane protein	NA	A0A0A7RU22	Clostridium_phage	39.0	8.1e-47
WP_012343410.1|3295096_3295321_-	hypothetical protein	NA	A0A0A7RW80	Clostridium_phage	69.0	2.4e-21
WP_012344546.1|3295298_3295715_-	hypothetical protein	NA	A0A0A7S0S0	Clostridium_phage	64.5	6.0e-42
WP_012344502.1|3295729_3296617_-	hypothetical protein	NA	A0A0A7RTZ9	Clostridium_phage	74.8	4.1e-120
WP_012343168.1|3296621_3297041_-	hypothetical protein	NA	A0A0A7RU17	Clostridium_phage	72.7	1.0e-57
WP_012344226.1|3297046_3297394_-	hypothetical protein	NA	A0A0A7RU51	Clostridium_phage	60.7	1.3e-34
WP_012344886.1|3297398_3297764_-	hypothetical protein	NA	A0A0A7RW73	Clostridium_phage	55.4	1.3e-32
WP_012343389.1|3297763_3298048_-	hypothetical protein	NA	A0A0A7S0R4	Clostridium_phage	59.2	1.0e-24
WP_012343926.1|3298552_3299074_-	hypothetical protein	NA	A0A0A7RVS1	Clostridium_phage	50.6	6.2e-36
WP_012344196.1|3299192_3299507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041173573.1|3299563_3300364_-	ATP-binding protein	NA	A0A2K9V3L7	Faecalibacterium_phage	35.2	5.8e-33
WP_012341928.1|3300353_3301259_-	phage replisome organizer N-terminal domain-containing protein	NA	A8ASN4	Listeria_phage	40.2	4.2e-40
WP_003403576.1|3301352_3301565_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012342520.1|3301616_3301835_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012345005.1|3302026_3302437_+	helix-turn-helix transcriptional regulator	NA	A0A0A7RUJ5	Clostridium_phage	54.7	3.9e-09
WP_012343692.1|3302736_3302886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012342745.1|3303962_3305450_+	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	37.1	2.0e-63
>prophage 6
NC_010520	Clostridium botulinum A3 str. Loch Maree, complete sequence	3992906	3311043	3321093	3992906	tRNA	Orpheovirus(33.33%)	9	NA	NA
WP_012343566.1|3311043_3312291_-|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	28.0	2.7e-29
WP_012343987.1|3312309_3313740_-	coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_003357988.1|3313777_3314377_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	32.5	1.1e-23
WP_012344539.1|3314437_3314887_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_012342026.1|3314929_3317101_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	38.4	7.3e-14
WP_012342715.1|3317225_3317744_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.5	3.0e-30
WP_012343454.1|3317852_3318731_-	DHH family phosphoesterase	NA	NA	NA	NA	NA
WP_012344924.1|3318959_3319823_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	40.8	4.5e-39
WP_012344168.1|3319824_3321093_-	protein translocase subunit SecD	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	27.9	3.6e-05
>prophage 7
NC_010520	Clostridium botulinum A3 str. Loch Maree, complete sequence	3992906	3651705	3660467	3992906	tRNA	Tupanvirus(16.67%)	7	NA	NA
WP_012342762.1|3651705_3653142_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L0T2	Tupanvirus	41.8	4.9e-107
WP_012344079.1|3653565_3653808_-	GIY-YIG nuclease family protein	NA	S6DF82	Invertebrate_iridovirus	38.5	2.1e-07
WP_012344921.1|3654245_3655904_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	25.1	6.0e-32
WP_041173576.1|3656117_3657464_-	HAMP domain-containing histidine kinase	NA	Q6XLV6	Feldmannia_irregularis_virus	25.2	1.2e-09
WP_012343015.1|3657486_3658179_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.1	1.2e-39
WP_012344950.1|3658348_3659557_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_012344190.1|3659561_3660467_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.1	3.0e-38
