assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000019645.1_ASM1964v1	NC_010498	Escherichia coli SMS-3-5, complete sequence	1	1516294-1516417	1	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA,NA|30aa|down_7|NC_010498.1_1525313_1525403_+	NA|79aa|up_9|NC_010498.1_1505206_1505443_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NC_010498.1_1505753_1507166_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NC_010498.1_1507722_1507932_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NC_010498.1_1508387_1509014_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NC_010498.1_1509034_1511137_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|NC_010498.1_1511149_1511788_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NC_010498.1_1511851_1512520_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NC_010498.1_1512516_1513302_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NC_010498.1_1513305_1514118_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|NC_010498.1_1515852_1516158_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NC_010498.1_1516731_1517988_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NC_010498.1_1518028_1519402_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NC_010498.1_1519616_1520258_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NC_010498.1_1520297_1521446_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NC_010498.1_1521736_1522948_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NC_010498.1_1523060_1523993_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NC_010498.1_1523989_1525015_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NC_010498.1_1525313_1525403_+	NA	NA|390aa|down_8|NC_010498.1_1525568_1526738_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NC_010498.1_1526883_1527465_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_000019645.1_ASM1964v1	NC_010498	Escherichia coli SMS-3-5, complete sequence	2	2128408-2128499	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA|70aa|up_9|NC_010498.1_2117659_2117869_-,NA	NA|70aa|up_9|NC_010498.1_2117659_2117869_-	NA	NA|1321aa|up_8|NC_010498.1_2117923_2121886_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NC_010498.1_2121925_2122564_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NC_010498.1_2122851_2123943_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NC_010498.1_2123942_2124635_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NC_010498.1_2124646_2125033_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NC_010498.1_2125040_2125853_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NC_010498.1_2125849_2126440_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NC_010498.1_2126450_2126945_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NC_010498.1_2126965_2128294_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NC_010498.1_2128922_2129519_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NC_010498.1_2129539_2129767_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NC_010498.1_2129804_2131046_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NC_010498.1_2131338_2132595_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NC_010498.1_2132854_2133775_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NC_010498.1_2133774_2134080_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NC_010498.1_2134231_2134831_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NC_010498.1_2134827_2137374_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NC_010498.1_2137373_2138546_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NC_010498.1_2138675_2139368_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_000019645.1_ASM1964v1	NC_010498	Escherichia coli SMS-3-5, complete sequence	3	2950900-2952209	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCAGGGAACAC,CGGTTTATCCCCGCTGGCGC,CCGGTTTATCCCCGCTGGCGCAGGGAACAC	29,20,30	0	0	NA	NA	I-E:NA:I-E	21,21,4	21	TypeI-E	DEDDh,c2c9_V-U4,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	NA,NA	NA|254aa|up_9|NC_010498.1_2942710_2943472_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_010498.1_2943452_2944502_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_010498.1_2944498_2944978_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_010498.1_2944977_2945688_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_010498.1_2945706_2946018_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_010498.1_2946211_2946535_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_010498.1_2946584_2947190_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_010498.1_2947189_2948617_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_010498.1_2948618_2949527_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_010498.1_2949778_2950816_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_010498.1_2952305_2952599_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NC_010498.1_2952595_2953519_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_010498.1_2953515_2954166_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_010498.1_2954147_2954894_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_010498.1_2954904_2955960_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NC_010498.1_2955974_2956511_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NC_010498.1_2956507_2958070_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_010498.1_2958167_2960867_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_010498.1_2961061_2961214_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_010498.1_2961478_2962213_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
