assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000019665.1_ASM1966v1	NC_010794	Methylacidiphilum infernorum V4, complete sequence	1	819598-819769	1,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1,csm3gr7,cas10	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC,GTTTCAAGCCCAGTGCACTGGGATACATCATCAACAGTA	35,39	0	0	NA	NA	NA:NA	2,2	2	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	NA|364aa|up_5|NC_010794.1_808526_809618_+,NA|84aa|up_1|NC_010794.1_816167_816419_+,NA|93aa|down_2|NC_010794.1_821033_821312_+,NA|139aa|down_4|NC_010794.1_822964_823381_-,NA|54aa|down_8|NC_010794.1_829081_829243_-,NA|110aa|down_9|NC_010794.1_829538_829868_-	NA|89aa|up_9|NC_010794.1_803797_804064_+	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional	NA|255aa|up_8|NC_010794.1_804079_804844_+	TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B	NA|497aa|up_7|NC_010794.1_804840_806331_+	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional	NA|291aa|up_6|NC_010794.1_806327_807200_+	pfam00231, ATP-synt, ATP synthase	NA|364aa|up_5|NC_010794.1_808526_809618_+	NA	NA|325aa|up_4|NC_010794.1_809846_810821_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|363aa|up_3|NC_010794.1_810879_811968_+	smart00933, NurA, NurA nuclease	NA|621aa|up_2|NC_010794.1_811971_813834_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|84aa|up_1|NC_010794.1_816167_816419_+	NA	NA|576aa|up_0|NC_010794.1_816542_818270_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|122aa|down_0|NC_010794.1_820206_820572_-	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor	NA|74aa|down_1|NC_010794.1_820770_820992_-	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]	NA|93aa|down_2|NC_010794.1_821033_821312_+	NA	NA|269aa|down_3|NC_010794.1_821677_822484_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|139aa|down_4|NC_010794.1_822964_823381_-	NA	cas2|117aa|down_5|NC_010794.1_825261_825612_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|117aa|down_6|NC_010794.1_826231_826582_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|463aa|down_7|NC_010794.1_827696_829085_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|54aa|down_8|NC_010794.1_829081_829243_-	NA	NA|110aa|down_9|NC_010794.1_829538_829868_-	NA
GCF_000019665.1_ASM1966v1	NC_010794	Methylacidiphilum infernorum V4, complete sequence	2	823735-823970	2,1,2	PILER-CR,CRT,CRISPRCasFinder	no	cas2,cas1,csm3gr7,cas10	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	Type III-C,Type III-A,Type III-B,Type III-D	AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC,AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC,GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	37,37,35	0	0	NA	NA	NA:NA:NA	3,3,3	3	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	NA|84aa|up_6|NC_010794.1_816167_816419_+,NA|93aa|up_2|NC_010794.1_821033_821312_+,NA|139aa|up_0|NC_010794.1_822964_823381_-,NA|54aa|down_3|NC_010794.1_829081_829243_-,NA|110aa|down_4|NC_010794.1_829538_829868_-,NA|230aa|down_5|NC_010794.1_829963_830653_-,NA|88aa|down_6|NC_010794.1_830829_831093_+,NA|70aa|down_7|NC_010794.1_831120_831330_+,NA|76aa|down_8|NC_010794.1_831379_831607_-	NA|325aa|up_9|NC_010794.1_809846_810821_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|363aa|up_8|NC_010794.1_810879_811968_+	smart00933, NurA, NurA nuclease	NA|621aa|up_7|NC_010794.1_811971_813834_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|84aa|up_6|NC_010794.1_816167_816419_+	NA	NA|576aa|up_5|NC_010794.1_816542_818270_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|122aa|up_4|NC_010794.1_820206_820572_-	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor	NA|74aa|up_3|NC_010794.1_820770_820992_-	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]	NA|93aa|up_2|NC_010794.1_821033_821312_+	NA	NA|269aa|up_1|NC_010794.1_821677_822484_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|139aa|up_0|NC_010794.1_822964_823381_-	NA	cas2|117aa|down_0|NC_010794.1_825261_825612_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|117aa|down_1|NC_010794.1_826231_826582_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|463aa|down_2|NC_010794.1_827696_829085_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|54aa|down_3|NC_010794.1_829081_829243_-	NA	NA|110aa|down_4|NC_010794.1_829538_829868_-	NA	NA|230aa|down_5|NC_010794.1_829963_830653_-	NA	NA|88aa|down_6|NC_010794.1_830829_831093_+	NA	NA|70aa|down_7|NC_010794.1_831120_831330_+	NA	NA|76aa|down_8|NC_010794.1_831379_831607_-	NA	csm3gr7|671aa|down_9|NC_010794.1_831788_833801_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein
GCF_000019665.1_ASM1966v1	NC_010794	Methylacidiphilum infernorum V4, complete sequence	3	824622-824925	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm3gr7,cas10	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC,GTTTCAAGCCCAGTGCACTGGGATA,GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT	35,25,36	0	0	NA	NA	NA:NA:NA	4,4,3	4	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	NA|84aa|up_6|NC_010794.1_816167_816419_+,NA|93aa|up_2|NC_010794.1_821033_821312_+,NA|139aa|up_0|NC_010794.1_822964_823381_-,NA|54aa|down_3|NC_010794.1_829081_829243_-,NA|110aa|down_4|NC_010794.1_829538_829868_-,NA|230aa|down_5|NC_010794.1_829963_830653_-,NA|88aa|down_6|NC_010794.1_830829_831093_+,NA|70aa|down_7|NC_010794.1_831120_831330_+,NA|76aa|down_8|NC_010794.1_831379_831607_-	NA|325aa|up_9|NC_010794.1_809846_810821_+	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|363aa|up_8|NC_010794.1_810879_811968_+	smart00933, NurA, NurA nuclease	NA|621aa|up_7|NC_010794.1_811971_813834_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|84aa|up_6|NC_010794.1_816167_816419_+	NA	NA|576aa|up_5|NC_010794.1_816542_818270_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|122aa|up_4|NC_010794.1_820206_820572_-	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor	NA|74aa|up_3|NC_010794.1_820770_820992_-	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]	NA|93aa|up_2|NC_010794.1_821033_821312_+	NA	NA|269aa|up_1|NC_010794.1_821677_822484_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|139aa|up_0|NC_010794.1_822964_823381_-	NA	cas2|117aa|down_0|NC_010794.1_825261_825612_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|117aa|down_1|NC_010794.1_826231_826582_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|463aa|down_2|NC_010794.1_827696_829085_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|54aa|down_3|NC_010794.1_829081_829243_-	NA	NA|110aa|down_4|NC_010794.1_829538_829868_-	NA	NA|230aa|down_5|NC_010794.1_829963_830653_-	NA	NA|88aa|down_6|NC_010794.1_830829_831093_+	NA	NA|70aa|down_7|NC_010794.1_831120_831330_+	NA	NA|76aa|down_8|NC_010794.1_831379_831607_-	NA	csm3gr7|671aa|down_9|NC_010794.1_831788_833801_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein
GCF_000019665.1_ASM1966v1	NC_010794	Methylacidiphilum infernorum V4, complete sequence	4	825656-825895	3,4,4	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,csm3gr7,cas10	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	Type III-C,Type III-A,Type III-B,Type III-D	TGTTTCAAGCCCAGTGCACTGGGATATATCA,GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC,GTTTCAAGCCCAGTGCACTGGGATATATCATCAACT	31,35,36	0	0	NA	NA	NA:NA:NA	3,3,2	3	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	NA|84aa|up_7|NC_010794.1_816167_816419_+,NA|93aa|up_3|NC_010794.1_821033_821312_+,NA|139aa|up_1|NC_010794.1_822964_823381_-,NA|54aa|down_2|NC_010794.1_829081_829243_-,NA|110aa|down_3|NC_010794.1_829538_829868_-,NA|230aa|down_4|NC_010794.1_829963_830653_-,NA|88aa|down_5|NC_010794.1_830829_831093_+,NA|70aa|down_6|NC_010794.1_831120_831330_+,NA|76aa|down_7|NC_010794.1_831379_831607_-,NA|167aa|down_9|NC_010794.1_833816_834317_-	NA|363aa|up_9|NC_010794.1_810879_811968_+	smart00933, NurA, NurA nuclease	NA|621aa|up_8|NC_010794.1_811971_813834_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|84aa|up_7|NC_010794.1_816167_816419_+	NA	NA|576aa|up_6|NC_010794.1_816542_818270_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|122aa|up_5|NC_010794.1_820206_820572_-	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor	NA|74aa|up_4|NC_010794.1_820770_820992_-	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]	NA|93aa|up_3|NC_010794.1_821033_821312_+	NA	NA|269aa|up_2|NC_010794.1_821677_822484_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|139aa|up_1|NC_010794.1_822964_823381_-	NA	cas2|117aa|up_0|NC_010794.1_825261_825612_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|117aa|down_0|NC_010794.1_826231_826582_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|463aa|down_1|NC_010794.1_827696_829085_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|54aa|down_2|NC_010794.1_829081_829243_-	NA	NA|110aa|down_3|NC_010794.1_829538_829868_-	NA	NA|230aa|down_4|NC_010794.1_829963_830653_-	NA	NA|88aa|down_5|NC_010794.1_830829_831093_+	NA	NA|70aa|down_6|NC_010794.1_831120_831330_+	NA	NA|76aa|down_7|NC_010794.1_831379_831607_-	NA	csm3gr7|671aa|down_8|NC_010794.1_831788_833801_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|167aa|down_9|NC_010794.1_833816_834317_-	NA
GCF_000019665.1_ASM1966v1	NC_010794	Methylacidiphilum infernorum V4, complete sequence	5	826621-827125	5,4,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm3gr7,cas10	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	Type III-C,Type III-A,Type III-B,Type III-D	GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC,GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT,GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	35,36,35	0	0	NA	NA	NA:NA:NA	7,7,6	7	TypeIII-C,TypeIII-A,TypeIII-B,TypeIII-D	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	NA|84aa|up_8|NC_010794.1_816167_816419_+,NA|93aa|up_4|NC_010794.1_821033_821312_+,NA|139aa|up_2|NC_010794.1_822964_823381_-,NA|54aa|down_1|NC_010794.1_829081_829243_-,NA|110aa|down_2|NC_010794.1_829538_829868_-,NA|230aa|down_3|NC_010794.1_829963_830653_-,NA|88aa|down_4|NC_010794.1_830829_831093_+,NA|70aa|down_5|NC_010794.1_831120_831330_+,NA|76aa|down_6|NC_010794.1_831379_831607_-,NA|167aa|down_8|NC_010794.1_833816_834317_-	NA|621aa|up_9|NC_010794.1_811971_813834_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|84aa|up_8|NC_010794.1_816167_816419_+	NA	NA|576aa|up_7|NC_010794.1_816542_818270_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|122aa|up_6|NC_010794.1_820206_820572_-	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor	NA|74aa|up_5|NC_010794.1_820770_820992_-	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]	NA|93aa|up_4|NC_010794.1_821033_821312_+	NA	NA|269aa|up_3|NC_010794.1_821677_822484_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|139aa|up_2|NC_010794.1_822964_823381_-	NA	cas2|117aa|up_1|NC_010794.1_825261_825612_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|117aa|up_0|NC_010794.1_826231_826582_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|463aa|down_0|NC_010794.1_827696_829085_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|54aa|down_1|NC_010794.1_829081_829243_-	NA	NA|110aa|down_2|NC_010794.1_829538_829868_-	NA	NA|230aa|down_3|NC_010794.1_829963_830653_-	NA	NA|88aa|down_4|NC_010794.1_830829_831093_+	NA	NA|70aa|down_5|NC_010794.1_831120_831330_+	NA	NA|76aa|down_6|NC_010794.1_831379_831607_-	NA	csm3gr7|671aa|down_7|NC_010794.1_831788_833801_-	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|167aa|down_8|NC_010794.1_833816_834317_-	NA	csm3gr7|484aa|down_9|NC_010794.1_834313_835765_-	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein
GCF_000019665.1_ASM1966v1	NC_010794	Methylacidiphilum infernorum V4, complete sequence	6	1909760-1909847	6	CRISPRCasFinder	no		DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	Orphan	GTTTTTAGGAAAAAAAGAAAGAA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	NA|479aa|up_9|NC_010794.1_1899727_1901164_+,NA|194aa|up_8|NC_010794.1_1901173_1901755_+,NA|63aa|up_4|NC_010794.1_1905250_1905439_-,NA|100aa|down_0|NC_010794.1_1909898_1910198_-,NA|68aa|down_1|NC_010794.1_1911873_1912077_-	NA|479aa|up_9|NC_010794.1_1899727_1901164_+	NA	NA|194aa|up_8|NC_010794.1_1901173_1901755_+	NA	NA|152aa|up_7|NC_010794.1_1902593_1903049_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|289aa|up_6|NC_010794.1_1903103_1903970_-	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|305aa|up_5|NC_010794.1_1904153_1905068_+	cd01945, ribokinase_group_B, Ribokinase-like subgroup B	NA|63aa|up_4|NC_010794.1_1905250_1905439_-	NA	NA|347aa|up_3|NC_010794.1_1905428_1906469_-	cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs	NA|340aa|up_2|NC_010794.1_1906551_1907571_-	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]	NA|228aa|up_1|NC_010794.1_1907567_1908251_-	PRK06202, PRK06202, hypothetical protein; Provisional	NA|418aa|up_0|NC_010794.1_1908427_1909681_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|100aa|down_0|NC_010794.1_1909898_1910198_-	NA	NA|68aa|down_1|NC_010794.1_1911873_1912077_-	NA	NA|318aa|down_2|NC_010794.1_1912513_1913467_-	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown]	NA|518aa|down_3|NC_010794.1_1913804_1915358_-	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated	NA|712aa|down_4|NC_010794.1_1916219_1918355_-	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|289aa|down_5|NC_010794.1_1918553_1919420_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|585aa|down_6|NC_010794.1_1919942_1921697_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|236aa|down_7|NC_010794.1_1921689_1922397_-	pfam05212, DUF707, Protein of unknown function (DUF707)	NA|1150aa|down_8|NC_010794.1_1922393_1925843_-	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown]	NA|542aa|down_9|NC_010794.1_1925938_1927564_-	pfam13649, Methyltransf_25, Methyltransferase domain
