The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_010581	Beijerinckia indica subsp. indica ATCC 9039, complete sequence	4170153	2970092	3031454	4170153	transposase,protease	Escherichia_phage(22.22%)	45	NA	NA
WP_148210531.1|2970092_2970855_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	42.5	8.0e-24
WP_081433768.1|2970780_2971308_-	DUF2278 family protein	NA	NA	NA	NA	NA
WP_081433822.1|2971371_2971668_-	DUF2278 family protein	NA	NA	NA	NA	NA
WP_012385551.1|2971760_2972318_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_158304390.1|2973256_2973430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012385552.1|2973739_2974681_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_012385553.1|2975260_2976160_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_012385554.1|2976330_2977284_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_012385555.1|2977794_2978685_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_012385556.1|2978730_2979717_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_193345338.1|2979919_2981623_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_081433823.1|2981660_2981879_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012385559.1|2985373_2986327_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_050763997.1|2986803_2987475_+|transposase	IS5/IS1182 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.9	1.2e-23
WP_012385560.1|2987645_2988842_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_012385561.1|2988898_2989627_+	DJ-1/PfpI family protein	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	31.5	7.9e-21
WP_012385562.1|2989664_2990825_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012385563.1|2990903_2991431_+	flavin reductase	NA	NA	NA	NA	NA
WP_012385564.1|2991680_2992535_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_012385565.1|2992859_2993540_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	48.5	4.6e-47
WP_012385566.1|2993936_2994551_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012385567.1|2994965_2995778_+	transporter	NA	NA	NA	NA	NA
WP_012385568.1|2996669_2997677_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_148210641.1|2997673_2998888_-	MFS transporter	NA	NA	NA	NA	NA
WP_012385570.1|2999001_2999895_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_081433771.1|3000707_3001304_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_012385572.1|3002506_3003811_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	39.4	3.5e-80
WP_012385573.1|3004056_3004848_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_012384191.1|3005142_3006555_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.8	1.6e-54
WP_012385575.1|3007210_3009523_-	endo-1,4-beta-xylanase	NA	NA	NA	NA	NA
WP_148210642.1|3009715_3011938_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA	NA
WP_012385577.1|3012004_3013201_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_012385578.1|3014740_3015559_+	DUF3102 domain-containing protein	NA	NA	NA	NA	NA
WP_148210786.1|3015798_3016521_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_148210643.1|3016632_3017001_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012385580.1|3017356_3018397_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_012385581.1|3018449_3019541_+	acyltransferase	NA	G9L6E5	Escherichia_phage	23.5	3.1e-05
WP_012385582.1|3020463_3021906_-	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_012385583.1|3023095_3024181_+	acyltransferase	NA	NA	NA	NA	NA
WP_012385584.1|3024201_3025200_-	GDP-mannose 4,6-dehydratase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	29.2	2.9e-34
WP_012385585.1|3025752_3027153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012385586.1|3027339_3027906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158304391.1|3029500_3029689_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_041778101.1|3029685_3029889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158304392.1|3031040_3031454_-|transposase	transposase	transposase	Q38213	Escherichia_phage	50.0	3.2e-11
>prophage 2
NC_010581	Beijerinckia indica subsp. indica ATCC 9039, complete sequence	4170153	3076909	3085534	4170153	tRNA	uncultured_Mediterranean_phage(75.0%)	10	NA	NA
WP_012385622.1|3076909_3078412_-	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	39.1	1.1e-13
WP_012385623.1|3078651_3079344_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1J0MC50	Streptomyces_phage	32.5	1.1e-11
WP_012385624.1|3079350_3080142_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	41.1	5.3e-39
WP_012385625.1|3080169_3081480_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.9	4.3e-102
WP_012385626.1|3081552_3082344_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	45.4	8.5e-53
WP_012385627.1|3082462_3082903_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_012385628.1|3083039_3083285_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	48.2	4.5e-05
WP_012385629.1|3083662_3083902_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_081433824.1|3083945_3084725_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	45.2	3.9e-34
WP_050764174.1|3084760_3085534_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	33.5	4.6e-27
>prophage 1
NC_010580	Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01, complete sequence	181736	84890	138609	181736	integrase,transposase	Bacillus_phage(20.0%)	49	80907:80922	140972:140987
80907:80922	attL	TTGCAGATAGGTCCGA	NA	NA	NA	NA
WP_012382932.1|84890_86063_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012382933.1|86059_86476_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_012382934.1|86475_86718_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_012382935.1|87015_87324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382936.1|87320_88394_+	DUF1612 domain-containing protein	NA	NA	NA	NA	NA
WP_012382937.1|88839_89535_-	DUF4410 domain-containing protein	NA	NA	NA	NA	NA
WP_012382938.1|89802_90072_-	cysteine rich repeat-containing protein	NA	NA	NA	NA	NA
WP_012382939.1|90077_91010_-	sterol desaturase family protein	NA	A0A1V0CNR7	Kaumoebavirus	25.3	2.4e-06
WP_041779077.1|91176_91905_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.3	7.1e-30
WP_012382941.1|91892_93278_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	24.9	2.3e-13
WP_012382942.1|93736_93961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382943.1|94774_95515_-	DUF4410 domain-containing protein	NA	NA	NA	NA	NA
WP_148210830.1|95611_95812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085938766.1|96693_97451_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	40.2	1.8e-12
WP_162020912.1|98068_98908_+	DUF1403 family protein	NA	NA	NA	NA	NA
WP_012382945.1|98910_99576_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_012382946.1|99689_100520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148210831.1|100614_100851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041779081.1|101223_102000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148210832.1|102048_102273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382948.1|102389_102587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382949.1|102745_104059_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_041779083.1|104189_105062_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_012382951.1|105064_105895_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_012382952.1|105905_106904_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.2	1.2e-22
WP_085938765.1|108522_109279_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	40.2	3.1e-12
WP_041779084.1|109310_109607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_193345348.1|109816_110467_+	sorbitol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_012382955.1|110489_112127_+	GMC family oxidoreductase	NA	NA	NA	NA	NA
WP_012382956.1|112119_113487_+	cytochrome c	NA	NA	NA	NA	NA
WP_041779121.1|113581_114331_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	43.8	7.1e-41
WP_012382959.1|114860_116858_-	transketolase	NA	NA	NA	NA	NA
WP_041779085.1|116929_117901_-	transaldolase	NA	A0A0E3G6C9	Synechococcus_phage	29.9	6.8e-12
WP_012382961.1|118024_119470_-	xylulokinase	NA	NA	NA	NA	NA
WP_012382962.1|119453_120419_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_012382964.1|120694_121741_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_041779086.1|121899_122835_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012382966.1|123071_123353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_081433845.1|124326_125901_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_148210839.1|126035_126182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382968.1|126418_126703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382969.1|126957_127434_+	Hsp20 family protein	NA	A0A1D7SU06	Cyanophage	36.6	4.5e-17
WP_012382970.1|127499_127910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012382971.1|130104_131553_+	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_012382972.1|131735_132608_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_012382973.1|133116_133731_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_012382974.1|133864_134689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012382977.1|136825_137332_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_012382978.1|137666_138609_+|transposase	IS630 family transposase	transposase	A0A2P0VP61	Tetraselmis_virus	24.3	4.3e-11
140972:140987	attR	TCGGACCTATCTGCAA	NA	NA	NA	NA
