assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000019965.1_ASM1996v1	NC_010571	Opitutus terrae PB90-1, complete sequence	1	940221-940291	1	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG	Orphan	ACGGGCGGGACGCCCGTGCCACG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG	NA|55aa|up_9|NC_010571.1_931197_931362_-,NA|125aa|up_6|NC_010571.1_932889_933264_-,NA|96aa|up_1|NC_010571.1_937468_937756_+,NA	NA|55aa|up_9|NC_010571.1_931197_931362_-	NA	NA|204aa|up_8|NC_010571.1_931469_932081_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|212aa|up_7|NC_010571.1_932100_932736_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|125aa|up_6|NC_010571.1_932889_933264_-	NA	NA|197aa|up_5|NC_010571.1_933365_933956_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|384aa|up_4|NC_010571.1_934075_935227_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|129aa|up_3|NC_010571.1_935485_935872_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|274aa|up_2|NC_010571.1_936331_937153_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|96aa|up_1|NC_010571.1_937468_937756_+	NA	NA|289aa|up_0|NC_010571.1_937965_938832_-	pfam06445, GyrI-like, GyrI-like small molecule binding domain	NA|328aa|down_0|NC_010571.1_941429_942413_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|152aa|down_1|NC_010571.1_942569_943025_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|367aa|down_2|NC_010571.1_943142_944243_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|1560aa|down_3|NC_010571.1_944250_948930_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|646aa|down_4|NC_010571.1_948926_950864_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|189aa|down_5|NC_010571.1_950884_951451_+	pfam13689, DUF4154, Domain of unknown function (DUF4154)	NA|755aa|down_6|NC_010571.1_951453_953718_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|264aa|down_7|NC_010571.1_953883_954675_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|258aa|down_8|NC_010571.1_954843_955617_+	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|219aa|down_9|NC_010571.1_955645_956302_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
GCF_000019965.1_ASM1996v1	NC_010571	Opitutus terrae PB90-1, complete sequence	2	3307819-3307908	2	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG	Orphan	GGCGAAAGCCTCACGGCTTCCGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG	NA|125aa|up_5|NC_010571.1_3304063_3304438_-,NA|153aa|up_3|NC_010571.1_3304983_3305442_-,NA|74aa|down_4|NC_010571.1_3311816_3312038_-,NA|677aa|down_8|NC_010571.1_3314733_3316764_-	NA|542aa|up_9|NC_010571.1_3297514_3299140_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|250aa|up_8|NC_010571.1_3299162_3299912_-	pfam14237, DUF4339, Domain of unknown function (DUF4339)	NA|591aa|up_7|NC_010571.1_3300196_3301969_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|462aa|up_6|NC_010571.1_3302614_3304000_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|125aa|up_5|NC_010571.1_3304063_3304438_-	NA	NA|181aa|up_4|NC_010571.1_3304419_3304962_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|153aa|up_3|NC_010571.1_3304983_3305442_-	NA	NA|408aa|up_2|NC_010571.1_3305560_3306784_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|122aa|up_1|NC_010571.1_3306886_3307252_+	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain	NA|141aa|up_0|NC_010571.1_3307296_3307719_+	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|218aa|down_0|NC_010571.1_3307987_3308641_+	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|186aa|down_1|NC_010571.1_3308798_3309356_-	PRK00529, PRK00529, elongation factor P; Validated	NA|447aa|down_2|NC_010571.1_3309564_3310905_+	PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed	NA|263aa|down_3|NC_010571.1_3310985_3311774_+	cd03351, LbH_UDP-GlcNAc_AT, UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc	NA|74aa|down_4|NC_010571.1_3311816_3312038_-	NA	NA|152aa|down_5|NC_010571.1_3312108_3312564_-	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed	NA|100aa|down_6|NC_010571.1_3312903_3313203_-	pfam06155, DUF971, Protein of unknown function (DUF971)	NA|437aa|down_7|NC_010571.1_3313348_3314659_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|677aa|down_8|NC_010571.1_3314733_3316764_-	NA	NA|190aa|down_9|NC_010571.1_3316787_3317357_-	TIGR03508, decahem_SO, decaheme c-type cytochrome, DmsE family
GCF_000019965.1_ASM1996v1	NC_010571	Opitutus terrae PB90-1, complete sequence	3	4503086-4503190	3	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG	Orphan	CAAAAGCAGAACGATCGGGATCGAG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG	NA|463aa|up_7|NC_010571.1_4494145_4495534_-,NA	NA|232aa|up_9|NC_010571.1_4492363_4493059_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|348aa|up_8|NC_010571.1_4493079_4494123_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|463aa|up_7|NC_010571.1_4494145_4495534_-	NA	NA|304aa|up_6|NC_010571.1_4495526_4496438_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|265aa|up_5|NC_010571.1_4496489_4497284_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|314aa|up_4|NC_010571.1_4497280_4498222_-	PRK10073, PRK10073, putative glycosyl transferase; Provisional	NA|394aa|up_3|NC_010571.1_4498224_4499406_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|128aa|up_2|NC_010571.1_4499504_4499888_-	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein	NA|199aa|up_1|NC_010571.1_4500088_4500685_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|460aa|up_0|NC_010571.1_4501437_4502817_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|574aa|down_0|NC_010571.1_4503482_4505204_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|850aa|down_1|NC_010571.1_4505304_4507854_-	PRK13024, PRK13024, bifunctional preprotein translocase subunit SecD/SecF; Reviewed	NA|112aa|down_2|NC_010571.1_4507938_4508274_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|646aa|down_3|NC_010571.1_4508622_4510560_+	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|150aa|down_4|NC_010571.1_4511606_4512056_-	pfam09424, YqeY, Yqey-like protein	NA|437aa|down_5|NC_010571.1_4512411_4513722_-	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|157aa|down_6|NC_010571.1_4513939_4514410_-	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria	NA|524aa|down_7|NC_010571.1_4514604_4516176_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|141aa|down_8|NC_010571.1_4516427_4516850_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|150aa|down_9|NC_010571.1_4517060_4517510_+	cd16352, CheD, chemotaxis protein CheD stimulates methylation of methyl-accepting chemotaxis proteins
GCF_000019965.1_ASM1996v1	NC_010571	Opitutus terrae PB90-1, complete sequence	4	4641332-4641434	4	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG	Orphan	CGTGGCACCGGCGTCTCGCCCGTG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG	NA|224aa|up_8|NC_010571.1_4630029_4630701_+,NA|202aa|down_2|NC_010571.1_4643751_4644357_+,NA|195aa|down_4|NC_010571.1_4646200_4646785_-	NA|278aa|up_9|NC_010571.1_4629154_4629988_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|224aa|up_8|NC_010571.1_4630029_4630701_+	NA	NA|177aa|up_7|NC_010571.1_4630697_4631228_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|491aa|up_6|NC_010571.1_4631420_4632893_+	pfam13282, DUF4070, Domain of unknown function (DUF4070)	NA|511aa|up_5|NC_010571.1_4633044_4634577_-	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases	NA|713aa|up_4|NC_010571.1_4634693_4636832_-	PRK13557, PRK13557, histidine kinase; Provisional	NA|259aa|up_3|NC_010571.1_4637121_4637898_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|264aa|up_2|NC_010571.1_4638042_4638834_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|323aa|up_1|NC_010571.1_4638861_4639830_+	pfam09084, NMT1, NMT1/THI5 like	NA|414aa|up_0|NC_010571.1_4640087_4641329_+	pfam13679, Methyltransf_32, Methyltransferase domain	NA|347aa|down_0|NC_010571.1_4641570_4642611_+	pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22	NA|230aa|down_1|NC_010571.1_4642836_4643526_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|202aa|down_2|NC_010571.1_4643751_4644357_+	NA	NA|472aa|down_3|NC_010571.1_4644701_4646117_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|195aa|down_4|NC_010571.1_4646200_4646785_-	NA	NA|290aa|down_5|NC_010571.1_4646906_4647776_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|702aa|down_6|NC_010571.1_4647772_4649878_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|497aa|down_7|NC_010571.1_4650073_4651564_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|327aa|down_8|NC_010571.1_4651814_4652795_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|444aa|down_9|NC_010571.1_4652791_4654123_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]
GCF_000019965.1_ASM1996v1	NC_010571	Opitutus terrae PB90-1, complete sequence	5	4963328-4963418	5	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG	Orphan	GCCATTTTCACGTAATACGTGAAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG	NA|79aa|up_6|NC_010571.1_4957935_4958172_-,NA|222aa|up_1|NC_010571.1_4962201_4962867_-,NA	NA|256aa|up_9|NC_010571.1_4952424_4953192_-	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|1058aa|up_8|NC_010571.1_4953247_4956421_-	pfam00873, ACR_tran, AcrB/AcrD/AcrF family	NA|415aa|up_7|NC_010571.1_4956573_4957818_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|79aa|up_6|NC_010571.1_4957935_4958172_-	NA	NA|202aa|up_5|NC_010571.1_4958271_4958877_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|98aa|up_4|NC_010571.1_4959010_4959304_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|333aa|up_3|NC_010571.1_4959284_4960283_-	pfam13593, SBF_like, SBF-like CPA transporter family (DUF4137)	NA|511aa|up_2|NC_010571.1_4960470_4962003_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|222aa|up_1|NC_010571.1_4962201_4962867_-	NA	NA|90aa|up_0|NC_010571.1_4962975_4963245_-	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family	NA|326aa|down_0|NC_010571.1_4963578_4964556_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|1256aa|down_1|NC_010571.1_4964736_4968504_+	pfam02018, CBM_4_9, Carbohydrate binding domain	NA|256aa|down_2|NC_010571.1_4968990_4969758_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|421aa|down_3|NC_010571.1_4969890_4971153_-	PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional	NA|349aa|down_4|NC_010571.1_4971268_4972315_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|818aa|down_5|NC_010571.1_4972461_4974915_-	cd11341, AmyAc_Pullulanase_LD-like, Alpha amylase catalytic domain found in Pullulanase (also called dextrinase; alpha-dextrin endo-1,6-alpha glucosidase), limit dextrinase, and related proteins	NA|313aa|down_6|NC_010571.1_4975064_4976003_-	cd16018, Enpp, Ectonucleotide pyrophosphatase/phosphodiesterase, also called autotaxin	NA|379aa|down_7|NC_010571.1_4976208_4977345_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|555aa|down_8|NC_010571.1_4977428_4979093_-	pfam08668, HDOD, HDOD domain	NA|169aa|down_9|NC_010571.1_4979375_4979882_-	sd00006, TPR, Tetratricopeptide repeat
