The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012578	Vibrio cholerae M66-2 chromosome I, complete sequence	2892523	519798	527022	2892523		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000698379.1|519798_520551_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|520543_521170_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000177568.1|521169_522105_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000116737.1|522178_523186_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|523278_525867_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|526134_527022_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 2
NC_012578	Vibrio cholerae M66-2 chromosome I, complete sequence	2892523	758650	765843	2892523		Faustovirus(16.67%)	9	NA	NA
WP_000775249.1|758650_759865_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.8	8.8e-33
WP_000331703.1|759901_760285_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|760345_760669_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105749.1|760717_761233_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196554.1|761256_763107_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	7.0e-106
WP_001124187.1|763120_763459_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872174.1|763507_763702_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107241.1|763921_765211_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.0	6.5e-34
WP_001162850.1|765414_765843_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NC_012578	Vibrio cholerae M66-2 chromosome I, complete sequence	2892523	2359790	2366407	2892523		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2359790_2360261_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2360525_2361635_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2361675_2362329_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2362333_2363437_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2363462_2363912_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2364011_2365262_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2365273_2366407_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
>prophage 1
NC_012580	Vibrio cholerae M66-2 chromosome II, complete sequence	1046382	369633	376740	1046382	transposase	Escherichia_phage(33.33%)	10	NA	NA
WP_086010879.1|369633_370811_-|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_000093800.1|371228_372236_+	DUF4365 domain-containing protein	NA	NA	NA	NA	NA
WP_001162670.1|372973_373261_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A222YWE2	Escherichia_phage	57.6	2.1e-25
WP_001232701.1|373271_373589_+	HigA family addiction module antidote protein	NA	A0A222YWD7	Escherichia_phage	46.2	5.3e-14
WP_134814058.1|373585_373696_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_001047180.1|373723_374200_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001201532.1|374336_374852_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	48.8	2.2e-46
WP_000221352.1|374987_375278_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	54.3	1.6e-17
WP_000213183.1|375267_375516_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_000036957.1|376086_376740_+	site-specific DNA-methyltransferase	NA	S5MBX9	Brevibacillus_phage	37.5	1.0e-27
