The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_011916	Caulobacter crescentus NA1000, complete genome	4042929	1768404	1776976	4042929		uncultured_Mediterranean_phage(57.14%)	8	NA	NA
YP_002517021.1|1768404_1769667_+	adenosylmethionine-8-amino-7-oxononanoate	NA	A0A1V0SKB7	Klosneuvirus	30.3	9.2e-17
YP_002517022.1|1769663_1770605_+	transporter, drug/metabolite exporter family	NA	NA	NA	NA	NA
YP_002517023.1|1770654_1771179_-	copper/zinc superoxide dismutase	NA	Q9MC02	Salmonella_phage	34.4	2.3e-14
YP_002517024.1|1771303_1774063_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	31.9	1.5e-96
YP_002517025.1|1774089_1774581_+	phosphopantetheine adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	49.7	6.5e-35
YP_002517026.1|1774738_1775572_+	cyclophilin-type peptidylprolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	34.5	8.2e-22
YP_002517027.1|1775568_1776417_+	cyclophilin-type peptidylprolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	37.3	1.8e-24
YP_002517028.1|1776508_1776976_+	cyclophilin-type peptidylprolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	52.8	3.6e-35
>prophage 2
NC_011916	Caulobacter crescentus NA1000, complete genome	4042929	2887327	2932736	4042929	transposase,integrase,holin	Klosneuvirus(10.0%)	52	2922177:2922192	2937193:2937208
YP_002518098.1|2887327_2888995_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	31.0	2.3e-60
YP_002518099.1|2889286_2889817_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
YP_009020545.1|2889996_2890155_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518100.1|2890142_2890931_+	phosphate starvation-inducible protein PhoH	NA	A0A0S0MVD6	Pseudomonas_phage	44.8	7.7e-46
YP_002518101.1|2891106_2891412_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518102.1|2891506_2893507_+	oligopeptide transporter	NA	NA	NA	NA	NA
YP_002518103.1|2893513_2894161_+	glutathione S-transferase	NA	NA	NA	NA	NA
YP_002518104.2|2894157_2894847_-	acetyltransferase	NA	NA	NA	NA	NA
YP_002518105.1|2894962_2895169_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518106.1|2895429_2896212_-	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA	NA
YP_002518107.1|2896212_2897085_-	serine acetyltransferase	NA	NA	NA	NA	NA
YP_002518108.1|2897128_2897845_-	ADP-ribose pyrophosphatase family protein	NA	NA	NA	NA	NA
YP_002518109.1|2897849_2898464_+	nitroreductase family	NA	NA	NA	NA	NA
YP_002518110.1|2898472_2898928_-	queuosine biosynthesis protein QueF	NA	E7DN65	Pneumococcus_phage	52.4	6.6e-26
YP_002518111.1|2898996_2899818_+	3-ketoacyl-(acyl-carrier-protein) reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	33.2	1.0e-16
YP_009020546.1|2899488_2899896_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518112.1|2899969_2900950_-|transposase	transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	24.8	6.9e-12
YP_002518113.1|2900946_2901381_-|transposase	transposase	transposase	NA	NA	NA	NA
YP_002518114.1|2901592_2902285_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518115.1|2902465_2903737_-	hypothetical protein	NA	NA	NA	NA	NA
YP_009020547.1|2903733_2903886_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518116.1|2903885_2906294_-	TonB dependent receptor	NA	NA	NA	NA	NA
YP_002518117.2|2906465_2907182_-	GntR-family transcriptional regulator	NA	NA	NA	NA	NA
YP_002518118.1|2907541_2908183_-	TetR-family transcriptional regulator	NA	NA	NA	NA	NA
YP_002518119.3|2908258_2909275_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518120.2|2909314_2910127_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
YP_002518121.2|2910261_2910510_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518122.1|2910513_2910963_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518123.1|2911007_2911682_-	ABC transporter permease protein	NA	NA	NA	NA	NA
YP_002518124.1|2911678_2912677_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.1	9.4e-25
YP_002518125.1|2912770_2914843_-	GAF/PAS-family histidine kinase/receiver protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	32.0	1.5e-45
YP_002518126.1|2915011_2917471_-	aminoacyl peptidase	NA	NA	NA	NA	NA
YP_002518127.1|2917964_2919263_-	L-lysine/L-arginine carboxypeptidase	NA	NA	NA	NA	NA
YP_002518128.2|2919670_2920069_+	HipB-family transcriptional regulator	NA	K4K6E9	Caulobacter_phage	54.6	3.3e-29
YP_002518129.1|2920072_2920831_-	competence/damage-inducible protein CinA	NA	NA	NA	NA	NA
YP_002518130.1|2920985_2921705_+	sugar fermentation stimulation protein A	NA	NA	NA	NA	NA
YP_002518131.1|2921762_2922152_+	hypothetical protein	NA	NA	NA	NA	NA
2922177:2922192	attL	GCGGTTTCGAGCCGAA	NA	NA	NA	NA
YP_002518132.1|2922304_2923135_+	methionine aminopeptidase	NA	NA	NA	NA	NA
YP_002518133.1|2923195_2923462_+	hypothetical protein	NA	NA	NA	NA	NA
YP_009020548.1|2923461_2923683_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518134.1|2923672_2923918_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518135.1|2924123_2924789_+	DNA repair protein RadC	NA	NA	NA	NA	NA
YP_002518136.2|2924941_2926183_+|integrase	bacteriophage P4 integrase	integrase	A0A248SL35	Klebsiella_phage	63.2	5.4e-155
YP_002518137.2|2926214_2926454_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518138.1|2926505_2926889_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518139.1|2926885_2927164_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518140.1|2927175_2928432_-	conjugal transfer protein TrbI	NA	NA	NA	NA	NA
YP_002518141.1|2928428_2929412_-	conjugal transfer protein TrbG	NA	NA	NA	NA	NA
YP_002518142.1|2929408_2930173_-	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
YP_002518143.1|2930176_2931532_-	conjugal transfer protein TrbL	NA	NA	NA	NA	NA
YP_002518144.1|2931549_2931816_+|transposase	transposase	transposase	NA	NA	NA	NA
YP_002518145.1|2931809_2932736_+|transposase	transposase	transposase	S5WIU1	Leptospira_phage	43.0	4.6e-50
2937193:2937208	attR	GCGGTTTCGAGCCGAA	NA	NA	NA	NA
>prophage 3
NC_011916	Caulobacter crescentus NA1000, complete genome	4042929	2970102	2983442	4042929	transposase	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage(33.33%)	18	NA	NA
YP_002518186.1|2970102_2970537_+|transposase	transposase	transposase	NA	NA	NA	NA
YP_002518187.1|2970533_2971514_+|transposase	transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	24.8	6.9e-12
YP_002518188.1|2971566_2973531_-	ice nucleation protein	NA	NA	NA	NA	NA
YP_002518189.1|2973536_2973908_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518190.2|2973978_2974182_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518191.1|2974860_2974974_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518192.1|2975199_2975355_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518193.1|2975364_2977254_+	TadG-family protein	NA	A0A2I7RHS5	Vibrio_phage	40.0	1.3e-06
YP_002518194.1|2977477_2978812_-	hipA-related phosphatidylinositol 3/4-kinase	NA	NA	NA	NA	NA
YP_002518195.1|2978808_2979663_-	MerR-family transcriptional regulator	NA	NA	NA	NA	NA
YP_009020550.1|2979669_2979816_-	hypothetical protein	NA	NA	NA	NA	NA
YP_009020551.1|2979689_2979911_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518196.1|2979911_2980037_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518197.1|2980221_2980575_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518198.1|2980585_2980978_+|transposase	transposase	transposase	NA	NA	NA	NA
YP_002518199.1|2981108_2982131_+|transposase	transposase	transposase	NA	NA	NA	NA
YP_002518200.1|2982255_2982522_+|transposase	transposase	transposase	NA	NA	NA	NA
YP_002518201.1|2982515_2983442_+|transposase	transposase	transposase	S5WIU1	Leptospira_phage	43.0	4.6e-50
>prophage 4
NC_011916	Caulobacter crescentus NA1000, complete genome	4042929	2998629	3028719	4042929	head,protease,tail,terminase,portal	Rhodobacter_phage(18.18%)	35	NA	NA
YP_002518219.1|2998629_3000222_-|protease	DegP/HtrA-family serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	28.4	7.7e-21
YP_002518220.1|3000401_3000854_-	cytochrome c-type biogenesis protein ccmH	NA	NA	NA	NA	NA
YP_002518221.1|3000850_3002833_-	heme chaperone-apocytochrome heme-lyase	NA	NA	NA	NA	NA
YP_002518222.1|3002987_3003476_-	cytochrome c-type biogenesis heme chaperone	NA	NA	NA	NA	NA
YP_002518223.1|3003472_3004585_-	cytochrome c-type biogenesis protein ccmI	NA	NA	NA	NA	NA
YP_002518224.2|3004684_3005377_+	alpha/beta hydrolase family protein	NA	NA	NA	NA	NA
YP_002518225.1|3005377_3006748_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518226.1|3006908_3008306_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
YP_002518227.1|3008436_3009114_-	two-component response regulator	NA	NA	NA	NA	NA
YP_002518228.1|3009132_3009450_-	PepSY peptidase propeptide domain protein	NA	NA	NA	NA	NA
YP_002518229.1|3009578_3010088_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518231.1|3010289_3011597_-	hipA-family phosphatidylinositol 3/4-kinase	NA	NA	NA	NA	NA
YP_002518232.1|3011593_3011953_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518233.1|3012115_3013060_-	DnaJ-class molecular chaperone	NA	A0A2L0UZR4	Agrobacterium_phage	26.2	1.1e-17
YP_002518234.1|3013148_3015680_-	phage host specificity protein	NA	A0A0K1LLC1	Rhodobacter_phage	40.0	2.5e-146
YP_002518235.1|3015315_3016860_-	phage host specificity protein	NA	A0A1V0DY94	Dinoroseobacter_phage	43.0	1.0e-65
YP_002518236.3|3016984_3017605_-	Spr-family cell wall-associated hydrolase	NA	F4YXU4	Roseobacter_phage	53.3	1.9e-36
YP_002518237.1|3017601_3018228_-	phage conserved hypothetical protein	NA	A0A0K1Y6Z2	Rhodobacter_phage	41.0	4.9e-19
YP_002518238.1|3018227_3018863_-	phage-derived conserved hypothetical protein	NA	A0A0B5A2K3	Paracoccus_phage	44.3	2.7e-41
YP_002518239.2|3019010_3019475_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518240.1|3019648_3020155_-|tail	phage tail length tape measure-related protein	tail	NA	NA	NA	NA
YP_002518241.1|3020151_3020331_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518242.1|3020327_3020612_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518243.1|3020767_3021184_-	phage protein	NA	NA	NA	NA	NA
YP_002518244.2|3021199_3021598_-	hypothetical protein	NA	NA	NA	NA	NA
YP_008877619.1|3021594_3021876_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
YP_002518245.1|3022018_3023239_-|head,protease	phage prohead protease	head,protease	Q3HQT0	Burkholderia_phage	43.3	3.3e-80
YP_002518246.1|3023435_3023798_+	glyoxalase/bleomycin resistance protein, dioxygenase superfamily	NA	NA	NA	NA	NA
YP_002518247.1|3023771_3024188_-|head,protease	phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	46.6	6.7e-25
YP_002518248.1|3024177_3024576_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518249.1|3024588_3025917_-|portal	portal protein	portal	W8ECU7	Geobacillus_phage	40.8	9.5e-65
YP_002518250.1|3025888_3026329_+	very short patch repair (Vsr) endonuclease	NA	NA	NA	NA	NA
YP_002518251.1|3026556_3026715_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518252.1|3026789_3026885_-	genetic exchange related protein	NA	NA	NA	NA	NA
YP_002518253.3|3027015_3028719_-|terminase	terminase-like family protein	terminase	A0A0K1LMR9	Caulobacter_phage	41.8	1.6e-69
>prophage 5
NC_011916	Caulobacter crescentus NA1000, complete genome	4042929	3604488	3652485	4042929	transposase,tRNA,protease	Staphylococcus_phage(15.38%)	53	NA	NA
YP_002518814.1|3604488_3604857_-|transposase	transposase	transposase	NA	NA	NA	NA
YP_002518815.1|3604871_3605282_-|transposase	transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.1	2.8e-23
YP_002518816.1|3605304_3605787_-	hypothetical protein	NA	A0A075BSJ0	Microcystis_phage	55.1	5.4e-34
YP_002518817.1|3606022_3608536_+	TonB-dependent receptor	NA	NA	NA	NA	NA
YP_002518818.2|3608705_3611123_+	M28-family zinc metallopeptidase	NA	NA	NA	NA	NA
YP_002518819.1|3611127_3612993_-	feruloyl-CoA synthetase	NA	A0A2H4PQM9	Staphylococcus_phage	26.8	3.3e-07
YP_002518820.1|3613083_3613359_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518821.2|3613396_3613870_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518822.2|3613939_3615472_-	S-adenosylmethionine-dependent methyltransferases	NA	NA	NA	NA	NA
YP_002518823.1|3615470_3615809_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518824.2|3616200_3616425_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518825.1|3616453_3616693_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518826.2|3616711_3617341_-	AcrR-family transcriptional regulator	NA	NA	NA	NA	NA
YP_002518827.1|3617632_3618478_+	UDP-2,3-diacylglucosamine hydrolase	NA	A0A218MKA7	uncultured_virus	47.1	1.6e-65
YP_002518828.1|3618477_3619569_+	GT1-family glycosyltransferase	NA	NA	NA	NA	NA
YP_002518829.1|3619645_3620482_+	esterase/lipase	NA	NA	NA	NA	NA
YP_002518830.3|3620487_3621267_-	horizontally transferred transmembrane domain (HTTM) protein	NA	NA	NA	NA	NA
YP_002518831.1|3621164_3621650_-	hypothetical protein	NA	NA	NA	NA	NA
YP_009020564.1|3621640_3621718_-	UDP-glucose 6-dehydrogenase-related protein	NA	NA	NA	NA	NA
YP_002518832.1|3621828_3623598_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	60.9	8.9e-10
YP_002518833.1|3623647_3624148_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518834.1|3624144_3624564_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518835.1|3624695_3626276_-	glycine cleavage system protein P, C-terminal domain	NA	E3ST28	Prochlorococcus_phage	37.3	1.1e-70
YP_002518836.1|3626272_3627619_-	glycine cleavage system protein P, N-terminal domain	NA	E3SN07	Prochlorococcus_phage	33.6	1.7e-45
YP_002518837.1|3627737_3628103_-	glycine cleavage system H protein	NA	NA	NA	NA	NA
YP_002518838.1|3628122_3629250_-	glycine cleavage system aminomethyltransferase T	NA	NA	NA	NA	NA
YP_002518839.1|3629633_3630437_+	ORF6N domain protein	NA	NA	NA	NA	NA
YP_002518840.1|3630433_3632938_-|protease	zinc-dependent metalloprotease, MMP subfamily 2	protease	NA	NA	NA	NA
YP_002518841.1|3633140_3634934_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
YP_002518842.1|3635002_3636805_-|tRNA	arginyl-tRNA synthetase	tRNA	M1PAX3	Moumouvirus	27.0	2.1e-54
YP_008877628.1|3636801_3637524_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518844.1|3637665_3638625_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
YP_002518845.1|3638699_3638969_+	hypothetical protein	NA	NA	NA	NA	NA
YP_002518846.1|3639148_3639541_-	death on curing toxin protein doc	NA	A0A1B3AYM0	Gordonia_phage	41.0	1.0e-06
YP_002518847.1|3639537_3639765_-	SpoVT-AbrB family transcription factor, phd antitoxin	NA	NA	NA	NA	NA
YP_002518848.1|3639846_3640800_+	homoserine kinase	NA	NA	NA	NA	NA
YP_002518849.1|3640796_3641246_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	56.7	3.6e-40
YP_002518850.2|3641242_3641656_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
YP_002518851.2|3641743_3642703_+	AraC-family transcription regulator FtrA	NA	NA	NA	NA	NA
YP_002518852.1|3642811_3643258_-	MarR-family transcriptional regulator	NA	NA	NA	NA	NA
YP_002518853.1|3643336_3644191_+	triphenylmethane reductase (TMR)-like protein	NA	NA	NA	NA	NA
YP_002518854.2|3644279_3644732_+	DNA integration/recombination/inversion protein	NA	NA	NA	NA	NA
YP_002518855.1|3644814_3645576_-	ABC transporter permease protein	NA	NA	NA	NA	NA
YP_002518856.1|3645572_3646517_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.4	1.4e-22
YP_002518857.1|3646620_3647085_-|protease	NfeD-related membrane protease regulator	protease	NA	NA	NA	NA
YP_002518858.1|3647086_3648061_-|protease	membrane protease family, stomatin/prohibitin-like protein	protease	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	32.5	2.5e-22
YP_002518859.1|3648095_3648524_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518860.2|3648686_3648914_+	zonular occludens toxin, zot-like protein	NA	NA	NA	NA	NA
YP_002518861.1|3648910_3649450_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518862.1|3649562_3650528_-	nitropropane dioxygenase/trans-enoyl-CoA reductase family	NA	NA	NA	NA	NA
YP_002518863.1|3650596_3650818_-	hypothetical protein	NA	NA	NA	NA	NA
YP_002518864.1|3650870_3651653_-	gluconate 5-dehydrogenase (Ga5DH)-related protein	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.2	2.9e-13
YP_002518865.2|3651717_3652485_-|protease	M50-like Site-2 protease	protease	NA	NA	NA	NA
