assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022065.1_ASM2206v1	NC_011898	Ruminiclostridium cellulolyticum H10, complete sequence	1	1800644-1801010	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	csa3,DEDDh,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas14u_CAS-V,RT,cas9	 Type I-U?,Type I-U,Type I-C	GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT,GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT,CGTAGGAGCGTGGATTGAAAT	32,32,21	0	0	NA	NA	I-C:I-C:NA	4,5,5	5	TypeI-U?,TypeI-U,TypeI-C	csa3,DEDDh,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas14u_CAS-V,RT,cas9	NA|328aa|up_9|NC_011898.1_1790441_1791425_-,NA|99aa|down_3|NC_011898.1_1805405_1805702_-	NA|328aa|up_9|NC_011898.1_1790441_1791425_-	NA	cas3|729aa|up_8|NC_011898.1_1791650_1793837_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|219aa|up_7|NC_011898.1_1793849_1794506_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|464aa|up_6|NC_011898.1_1794510_1795902_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	NA|349aa|up_5|NC_011898.1_1795898_1796945_-	pfam00665, rve, Integrase core domain	cas8c|173aa|up_4|NC_011898.1_1797073_1797592_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|295aa|up_3|NC_011898.1_1797594_1798479_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|223aa|up_2|NC_011898.1_1798475_1799144_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|NC_011898.1_1799140_1800172_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_011898.1_1800181_1800472_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|382aa|down_0|NC_011898.1_1801076_1802221_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|552aa|down_1|NC_011898.1_1802970_1804626_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|236aa|down_2|NC_011898.1_1804705_1805413_-	cd14814, Peptidase_M15, Metalloproteases including zinc D-Ala-D-Ala carboxypeptidase, L-Ala-D-Glu peptidase, L,D-carboxypeptidase, bacteriophage endolysins, and related proteins	NA|99aa|down_3|NC_011898.1_1805405_1805702_-	NA	NA|73aa|down_4|NC_011898.1_1805992_1806211_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|117aa|down_5|NC_011898.1_1806159_1806510_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|2332aa|down_6|NC_011898.1_1806868_1813864_+	pfam00942, CBM_3, Cellulose binding domain	NA|1344aa|down_7|NC_011898.1_1813944_1817976_+	pfam14410, GH-E, HNH/ENDO VII superfamily nuclease with conserved GHE residues	NA|124aa|down_8|NC_011898.1_1817993_1818365_+	sd00045, ANK, ankyrin repeats	NA|165aa|down_9|NC_011898.1_1819046_1819541_+	pfam14414, WHH, A nuclease of the HNH/ENDO VII superfamily with conserved WHH
GCF_000022065.1_ASM2206v1	NC_011898	Ruminiclostridium cellulolyticum H10, complete sequence	2	1802270-1802838	2,2,2	CRT,PILER-CR,CRISPRCasFinder	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	csa3,DEDDh,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas14u_CAS-V,RT,cas9	 Type I-U?,Type I-U,Type I-C	GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT,GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT,GTCGCTCCTCTCGTAGGAGCGTGGATTGAAAT	32,32,32	1	1	1802706-1802740	NC_011898.1_3684049-3684083	I-C:I-C:I-C	8,6,7	8	TypeI-U?,TypeI-U,TypeI-C	csa3,DEDDh,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas14u_CAS-V,RT,cas9	NA,NA|99aa|down_2|NC_011898.1_1805405_1805702_-	cas3|729aa|up_9|NC_011898.1_1791650_1793837_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|219aa|up_8|NC_011898.1_1793849_1794506_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|464aa|up_7|NC_011898.1_1794510_1795902_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	NA|349aa|up_6|NC_011898.1_1795898_1796945_-	pfam00665, rve, Integrase core domain	cas8c|173aa|up_5|NC_011898.1_1797073_1797592_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|295aa|up_4|NC_011898.1_1797594_1798479_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|223aa|up_3|NC_011898.1_1798475_1799144_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_2|NC_011898.1_1799140_1800172_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_1|NC_011898.1_1800181_1800472_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|382aa|up_0|NC_011898.1_1801076_1802221_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|552aa|down_0|NC_011898.1_1802970_1804626_+	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|236aa|down_1|NC_011898.1_1804705_1805413_-	cd14814, Peptidase_M15, Metalloproteases including zinc D-Ala-D-Ala carboxypeptidase, L-Ala-D-Glu peptidase, L,D-carboxypeptidase, bacteriophage endolysins, and related proteins	NA|99aa|down_2|NC_011898.1_1805405_1805702_-	NA	NA|73aa|down_3|NC_011898.1_1805992_1806211_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|117aa|down_4|NC_011898.1_1806159_1806510_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|2332aa|down_5|NC_011898.1_1806868_1813864_+	pfam00942, CBM_3, Cellulose binding domain	NA|1344aa|down_6|NC_011898.1_1813944_1817976_+	pfam14410, GH-E, HNH/ENDO VII superfamily nuclease with conserved GHE residues	NA|124aa|down_7|NC_011898.1_1817993_1818365_+	sd00045, ANK, ankyrin repeats	NA|165aa|down_8|NC_011898.1_1819046_1819541_+	pfam14414, WHH, A nuclease of the HNH/ENDO VII superfamily with conserved WHH	NA|155aa|down_9|NC_011898.1_1819563_1820028_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)
GCF_000022065.1_ASM2206v1	NC_011898	Ruminiclostridium cellulolyticum H10, complete sequence	3	3652357-3652923	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas9	csa3,DEDDh,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas14u_CAS-V,RT,cas9	 or Type II-C?,Type II-B, Type II-B,Type II-C,Type II-A	GTTATAGCTCCAATTCAGGCTCCGATATGCTATAAT,GTTATAGCTCCAATTCAGGCTCCGATATGCTATAAT,GTTATAGCTCCAATTCAGGCTCCGATATGCTATAAT	36,36,36	0	0	NA	NA	NA:NA:NA	8,8,8	8	orTypeII-C?,TypeII-B,TypeII-B,TypeII-C,TypeII-A	csa3,DEDDh,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas14u_CAS-V,RT,cas9	NA|131aa|up_9|NC_011898.1_3642270_3642663_+,NA|46aa|up_5|NC_011898.1_3647792_3647930_-,NA|72aa|up_4|NC_011898.1_3648647_3648863_-,NA|45aa|up_0|NC_011898.1_3651743_3651878_-,NA|190aa|down_3|NC_011898.1_3658713_3659283_-,NA|378aa|down_4|NC_011898.1_3660782_3661916_-,NA|61aa|down_5|NC_011898.1_3661890_3662073_-,NA|248aa|down_8|NC_011898.1_3664864_3665608_-	NA|131aa|up_9|NC_011898.1_3642270_3642663_+	NA	NA|400aa|up_8|NC_011898.1_3643212_3644412_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|163aa|up_7|NC_011898.1_3644414_3644903_-	COG0490, COG0490, Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]	NA|502aa|up_6|NC_011898.1_3646231_3647737_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|46aa|up_5|NC_011898.1_3647792_3647930_-	NA	NA|72aa|up_4|NC_011898.1_3648647_3648863_-	NA	NA|108aa|up_3|NC_011898.1_3649026_3649350_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|236aa|up_2|NC_011898.1_3649729_3650437_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|431aa|up_1|NC_011898.1_3650436_3651729_+	PRK11086, PRK11086, sensory histidine kinase DcuS; Provisional	NA|45aa|up_0|NC_011898.1_3651743_3651878_-	NA	cas2|106aa|down_0|NC_011898.1_3652989_3653307_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|299aa|down_1|NC_011898.1_3653329_3654226_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1022aa|down_2|NC_011898.1_3654188_3657254_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|190aa|down_3|NC_011898.1_3658713_3659283_-	NA	NA|378aa|down_4|NC_011898.1_3660782_3661916_-	NA	NA|61aa|down_5|NC_011898.1_3661890_3662073_-	NA	NA|311aa|down_6|NC_011898.1_3662084_3663017_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|611aa|down_7|NC_011898.1_3663029_3664862_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|248aa|down_8|NC_011898.1_3664864_3665608_-	NA	NA|81aa|down_9|NC_011898.1_3665761_3666004_-	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T
