assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	1	623360-623959	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas12b	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Type V-B	GTGCCAACGCGCTCAGGATCTGGCGCCCACTGCGAC,GTGCCAACGCGCTCAGGATCTGGCGCCCACTGCGAC,GTGCCAACGCGCTCAGGATCTGGCGCCCACTGCGAC	36,36,36	1	1	623678-623712	NC_011894.1_3593158-3593192	NA:NA:NA	8,8,6	8	TypeV-B	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|82aa|up_9|NC_011894.1_611656_611902_+,NA|133aa|up_8|NC_011894.1_611992_612391_+,NA|69aa|up_6|NC_011894.1_614933_615140_-,NA|83aa|up_4|NC_011894.1_616088_616337_+,NA|78aa|up_3|NC_011894.1_616599_616833_-,cas12b|684aa|down_0|NC_011894.1_624238_626290_-,cas12b|465aa|down_1|NC_011894.1_626252_627647_-,NA|106aa|down_2|NC_011894.1_627979_628297_-,NA|90aa|down_3|NC_011894.1_628948_629218_-,NA|136aa|down_4|NC_011894.1_629214_629622_-,NA|65aa|down_5|NC_011894.1_629793_629988_-,NA|75aa|down_7|NC_011894.1_630961_631186_-,NA|785aa|down_8|NC_011894.1_631280_633635_-,NA|244aa|down_9|NC_011894.1_633644_634376_-	NA|82aa|up_9|NC_011894.1_611656_611902_+	NA	NA|133aa|up_8|NC_011894.1_611992_612391_+	NA	NA|117aa|up_7|NC_011894.1_613010_613361_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|69aa|up_6|NC_011894.1_614933_615140_-	NA	NA|148aa|up_5|NC_011894.1_615498_615942_+	pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein	NA|83aa|up_4|NC_011894.1_616088_616337_+	NA	NA|78aa|up_3|NC_011894.1_616599_616833_-	NA	NA|100aa|up_2|NC_011894.1_617962_618262_-	pfam13438, DUF4113, Domain of unknown function (DUF4113)	NA|765aa|up_1|NC_011894.1_618409_620704_-	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal	NA|427aa|up_0|NC_011894.1_620837_622118_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	cas12b|684aa|down_0|NC_011894.1_624238_626290_-	NA	cas12b|465aa|down_1|NC_011894.1_626252_627647_-	NA	NA|106aa|down_2|NC_011894.1_627979_628297_-	NA	NA|90aa|down_3|NC_011894.1_628948_629218_-	NA	NA|136aa|down_4|NC_011894.1_629214_629622_-	NA	NA|65aa|down_5|NC_011894.1_629793_629988_-	NA	NA|253aa|down_6|NC_011894.1_630038_630797_-	cd00736, lambda_lys-like, Bacteriophage lambda lysozyme and similar proteins	NA|75aa|down_7|NC_011894.1_630961_631186_-	NA	NA|785aa|down_8|NC_011894.1_631280_633635_-	NA	NA|244aa|down_9|NC_011894.1_633644_634376_-	NA
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	2	647730-647837	2	CRISPRCasFinder	no		DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Orphan	GACGCGGACCATCGAGCGGGCGAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|144aa|up_8|NC_011894.1_640877_641309_+,NA|103aa|up_6|NC_011894.1_642374_642683_-,NA|170aa|up_2|NC_011894.1_645823_646333_-,NA|255aa|up_1|NC_011894.1_646363_647128_-,NA|122aa|down_3|NC_011894.1_650902_651268_-,NA|259aa|down_5|NC_011894.1_651850_652627_-,NA|137aa|down_6|NC_011894.1_652626_653037_-	NA|142aa|up_9|NC_011894.1_635678_636104_-	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|144aa|up_8|NC_011894.1_640877_641309_+	NA	NA|296aa|up_7|NC_011894.1_641316_642204_-	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|103aa|up_6|NC_011894.1_642374_642683_-	NA	NA|179aa|up_5|NC_011894.1_643256_643793_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|176aa|up_4|NC_011894.1_643851_644379_-	pfam04985, Phage_tube, Phage tail tube protein FII	NA|429aa|up_3|NC_011894.1_644461_645748_-	PHA02560, FI, major tail sheath protein; Provisional	NA|170aa|up_2|NC_011894.1_645823_646333_-	NA	NA|255aa|up_1|NC_011894.1_646363_647128_-	NA	NA|190aa|up_0|NC_011894.1_647140_647710_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|321aa|down_0|NC_011894.1_648610_649572_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|264aa|down_1|NC_011894.1_649654_650446_-	PHA02568, J, baseplate assembly protein; Provisional	NA|141aa|down_2|NC_011894.1_650476_650899_-	COG3628, COG3628, Phage baseplate assembly protein W [General function prediction only]	NA|122aa|down_3|NC_011894.1_650902_651268_-	NA	NA|179aa|down_4|NC_011894.1_651284_651821_-	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|259aa|down_5|NC_011894.1_651850_652627_-	NA	NA|137aa|down_6|NC_011894.1_652626_653037_-	NA	NA|346aa|down_7|NC_011894.1_653423_654461_-	pfam03864, Phage_cap_E, Phage major capsid protein E	NA|130aa|down_8|NC_011894.1_654467_654857_-	pfam02924, HDPD, Bacteriophage lambda head decoration protein D	NA|421aa|down_9|NC_011894.1_654886_656149_-	cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	3	862970-863720	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas4,cas3,cas7b,cas5	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Unclear	GTTTCAATCCGCGCCCCCGTGAGGGGGCGAC,GTTTCAATCCGCGCCCCCGTGAGGGGGCGAC,GTTTCAATCCGCGCCCCCGTGAGGGGGCGAC	31,31,31	0	0	NA	NA	NA:NA:NA	11,11,9	11	Unclear	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|76aa|up_5|NC_011894.1_857642_857870_+,NA|62aa|down_5|NC_011894.1_871973_872159_-	NA|165aa|up_9|NC_011894.1_854849_855344_+	TIGR00691, PppGpp_synthetase	NA|237aa|up_8|NC_011894.1_855412_856123_+	COG5530, COG5530, Predicted integral membrane protein [Function unknown]	NA|321aa|up_7|NC_011894.1_856239_857202_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|137aa|up_6|NC_011894.1_857220_857631_+	cd13921, Amicyanin, Amicyanin is a type I blue copper protein that plays an essential role in electron transfer	NA|76aa|up_5|NC_011894.1_857642_857870_+	NA	NA|200aa|up_4|NC_011894.1_857869_858469_+	PRK12533, PRK12533, RNA polymerase sigma factor; Provisional	NA|275aa|up_3|NC_011894.1_858465_859290_+	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|445aa|up_2|NC_011894.1_859346_860681_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|152aa|up_1|NC_011894.1_860803_861259_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|386aa|up_0|NC_011894.1_861612_862770_+	COG3391, COG3391, Uncharacterized conserved protein [Function unknown]	cas2|97aa|down_0|NC_011894.1_863900_864191_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|210aa|down_1|NC_011894.1_865275_865905_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas3|748aa|down_2|NC_011894.1_865897_868141_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas7b|364aa|down_3|NC_011894.1_868145_869237_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas5|212aa|down_4|NC_011894.1_871117_871753_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|62aa|down_5|NC_011894.1_871973_872159_-	NA	NA|953aa|down_6|NC_011894.1_872264_875123_-	cd16904, pesticin_lyz-like, pesticin C-terminal-like domain of uncharacterized proteins	NA|384aa|down_7|NC_011894.1_875300_876452_-	COG1864, NUC1, DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]	NA|622aa|down_8|NC_011894.1_878656_880522_+	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal	NA|824aa|down_9|NC_011894.1_880734_883206_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	4	3277368-3277499	4	CRISPRCasFinder	no		DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Orphan	TCCCCTTGCAATGACCGCTTCTCTCTCGATGCCACGGTGCGCGAGC	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA,NA	NA|288aa|up_9|NC_011894.1_3260296_3261160_+	TIGR03132, malonate_mdcB, triphosphoribosyl-dephospho-CoA synthase MdcB	NA|308aa|up_8|NC_011894.1_3261156_3262080_+	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit	NA|418aa|up_7|NC_011894.1_3262520_3263774_+	PRK07236, PRK07236, hypothetical protein; Provisional	NA|100aa|up_6|NC_011894.1_3263802_3264102_+	pfam04341, DUF485, Protein of unknown function, DUF485	NA|553aa|up_5|NC_011894.1_3264104_3265763_+	PRK09395, actP, cation/acetate symporter ActP	NA|141aa|up_4|NC_011894.1_3265777_3266200_+	cd06982, cupin_BauB-like, Pseudomonas aeruginosa BauB and related proteins, cupin domain	NA|376aa|up_3|NC_011894.1_3266474_3267602_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|243aa|up_2|NC_011894.1_3267722_3268451_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|771aa|up_1|NC_011894.1_3268849_3271162_-	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase	NA|345aa|up_0|NC_011894.1_3274969_3276004_+	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase	NA|286aa|down_0|NC_011894.1_3279102_3279960_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|286aa|down_1|NC_011894.1_3280235_3281093_+	pfam02397, Bac_transf, Bacterial sugar transferase	NA|246aa|down_2|NC_011894.1_3281455_3282193_+	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose	NA|332aa|down_3|NC_011894.1_3282189_3283185_+	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs	NA|727aa|down_4|NC_011894.1_3283181_3285362_+	COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]	NA|458aa|down_5|NC_011894.1_3285358_3286732_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|705aa|down_6|NC_011894.1_3286728_3288843_+	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|499aa|down_7|NC_011894.1_3288839_3290336_+	TIGR00947, 2A73, putative bicarbonate transporter, IctB family	NA|347aa|down_8|NC_011894.1_3290332_3291373_+	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|323aa|down_9|NC_011894.1_3291877_3292846_+	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	5	4807572-4807661	5	CRISPRCasFinder	no		DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Orphan	ACGATGCGAAAACAAAGAGATACAGCA	27	1	1	4807599-4807634	NC_011894.1_7681604-7681569	NA	1	1	Orphan	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|78aa|up_8|NC_011894.1_4799758_4799992_-,NA|132aa|up_6|NC_011894.1_4801521_4801917_-,NA	NA|109aa|up_9|NC_011894.1_4799251_4799578_+	cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of  Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent	NA|78aa|up_8|NC_011894.1_4799758_4799992_-	NA	NA|333aa|up_7|NC_011894.1_4800329_4801328_-	COG3176, COG3176, Putative hemolysin [General function prediction only]	NA|132aa|up_6|NC_011894.1_4801521_4801917_-	NA	NA|106aa|up_5|NC_011894.1_4802187_4802505_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|89aa|up_4|NC_011894.1_4802551_4802818_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|214aa|up_3|NC_011894.1_4803012_4803654_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|343aa|up_2|NC_011894.1_4803824_4804853_+	PRK12299, obgE, GTPase CgtA; Reviewed	NA|374aa|up_1|NC_011894.1_4804988_4806110_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|432aa|up_0|NC_011894.1_4806235_4807531_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|210aa|down_0|NC_011894.1_4807704_4808334_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|110aa|down_1|NC_011894.1_4808522_4808852_+	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap	NA|163aa|down_2|NC_011894.1_4808883_4809372_+	PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional	NA|431aa|down_3|NC_011894.1_4809398_4810691_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|441aa|down_4|NC_011894.1_4810690_4812013_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|397aa|down_5|NC_011894.1_4812238_4813429_+	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase	NA|183aa|down_6|NC_011894.1_4813510_4814059_+	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed	NA|207aa|down_7|NC_011894.1_4814104_4814725_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	NA|503aa|down_8|NC_011894.1_4814990_4816499_-	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|145aa|down_9|NC_011894.1_4816820_4817255_+	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	6	5108515-5108659	6	CRISPRCasFinder	no		DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Orphan	GGCGGCCGAGCAGGGCACGGAGGCGCCGGACTGGCCTCCGGCCGCC	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|84aa|up_4|NC_011894.1_5102729_5102981_-,NA|123aa|up_2|NC_011894.1_5104345_5104714_+,NA|103aa|down_0|NC_011894.1_5109180_5109489_-,NA|113aa|down_1|NC_011894.1_5109598_5109937_+,NA|124aa|down_3|NC_011894.1_5112766_5113138_-,NA|150aa|down_4|NC_011894.1_5113137_5113587_-,NA|188aa|down_5|NC_011894.1_5113615_5114179_-,NA|121aa|down_7|NC_011894.1_5115029_5115392_-,NA|139aa|down_8|NC_011894.1_5115388_5115805_-,NA|150aa|down_9|NC_011894.1_5115806_5116256_-	NA|345aa|up_9|NC_011894.1_5093573_5094608_+	pfam00665, rve, Integrase core domain	NA|300aa|up_8|NC_011894.1_5096072_5096972_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|306aa|up_7|NC_011894.1_5097156_5098074_-	pfam05201, GlutR_N, Glutamyl-tRNAGlu reductase, N-terminal domain	NA|235aa|up_6|NC_011894.1_5098861_5099566_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|349aa|up_5|NC_011894.1_5099943_5100990_+	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|84aa|up_4|NC_011894.1_5102729_5102981_-	NA	NA|239aa|up_3|NC_011894.1_5103260_5103977_-	PRK09391, fixK, transcriptional regulator FixK; Provisional	NA|123aa|up_2|NC_011894.1_5104345_5104714_+	NA	NA|339aa|up_1|NC_011894.1_5105184_5106201_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|251aa|up_0|NC_011894.1_5106540_5107293_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|103aa|down_0|NC_011894.1_5109180_5109489_-	NA	NA|113aa|down_1|NC_011894.1_5109598_5109937_+	NA	NA|475aa|down_2|NC_011894.1_5110164_5111589_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|124aa|down_3|NC_011894.1_5112766_5113138_-	NA	NA|150aa|down_4|NC_011894.1_5113137_5113587_-	NA	NA|188aa|down_5|NC_011894.1_5113615_5114179_-	NA	NA|215aa|down_6|NC_011894.1_5114268_5114913_-	COG3926, zliS, Lysozyme family protein [General function prediction only]	NA|121aa|down_7|NC_011894.1_5115029_5115392_-	NA	NA|139aa|down_8|NC_011894.1_5115388_5115805_-	NA	NA|150aa|down_9|NC_011894.1_5115806_5116256_-	NA
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	7	5490281-5494275	7,3,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Type I-E	CGGATCATCCCCGCATCCGCGGGGGACAC,NCGGATCATCCCCGCATCCGCGGGGGACAC,CGGATCATCCCCGCATCCGCGGGGGACAC,CGGATCATCCCCGCATCCGCGGGGGACAC	29,30,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	65,65,59,59	65	TypeI-E	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|75aa|up_8|NC_011894.1_5484427_5484652_+,NA|279aa|up_7|NC_011894.1_5484736_5485573_+,NA|296aa|up_5|NC_011894.1_5486513_5487401_+,NA|105aa|up_4|NC_011894.1_5487710_5488025_-,NA|87aa|up_3|NC_011894.1_5488399_5488660_-,NA|159aa|up_2|NC_011894.1_5488681_5489158_-,NA|139aa|up_1|NC_011894.1_5489139_5489556_-,NA|62aa|up_0|NC_011894.1_5489971_5490157_-,NA	NA|453aa|up_9|NC_011894.1_5482899_5484258_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|75aa|up_8|NC_011894.1_5484427_5484652_+	NA	NA|279aa|up_7|NC_011894.1_5484736_5485573_+	NA	NA|75aa|up_6|NC_011894.1_5486075_5486300_-	cd17586, REC_PFxFATGY, phosphoacceptor receiver (REC) domain of PFxFATGY motif single-domain (stand-alone) response regulators	NA|296aa|up_5|NC_011894.1_5486513_5487401_+	NA	NA|105aa|up_4|NC_011894.1_5487710_5488025_-	NA	NA|87aa|up_3|NC_011894.1_5488399_5488660_-	NA	NA|159aa|up_2|NC_011894.1_5488681_5489158_-	NA	NA|139aa|up_1|NC_011894.1_5489139_5489556_-	NA	NA|62aa|up_0|NC_011894.1_5489971_5490157_-	NA	cas2|93aa|down_0|NC_011894.1_5494367_5494646_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|315aa|down_1|NC_011894.1_5494659_5495604_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|242aa|down_2|NC_011894.1_5495600_5496326_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|274aa|down_3|NC_011894.1_5496328_5497150_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|347aa|down_4|NC_011894.1_5497149_5498190_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|206aa|down_5|NC_011894.1_5498191_5498809_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|561aa|down_6|NC_011894.1_5498805_5500488_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|898aa|down_7|NC_011894.1_5500722_5503416_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|589aa|down_8|NC_011894.1_5503614_5505381_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|513aa|down_9|NC_011894.1_5506145_5507684_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	8	5609286-5609384	8	CRISPRCasFinder	no		DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Orphan	GCCTACGACGTGCCGCCGCCCCCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|179aa|up_5|NC_011894.1_5600496_5601033_+,NA|68aa|down_8|NC_011894.1_5622043_5622247_-	NA|641aa|up_9|NC_011894.1_5595807_5597730_+	COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]	NA|256aa|up_8|NC_011894.1_5598503_5599271_+	PRK05177, minC, septum formation inhibitor MinC	NA|272aa|up_7|NC_011894.1_5599381_5600197_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|90aa|up_6|NC_011894.1_5600193_5600463_+	PRK00296, minE, cell division topological specificity factor MinE; Reviewed	NA|179aa|up_5|NC_011894.1_5600496_5601033_+	NA	NA|317aa|up_4|NC_011894.1_5601476_5602427_-	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|292aa|up_3|NC_011894.1_5602573_5603449_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|510aa|up_2|NC_011894.1_5603463_5604993_+	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like	NA|457aa|up_1|NC_011894.1_5605091_5606462_+	pfam11299, DUF3100, Protein of unknown function (DUF3100)	NA|417aa|up_0|NC_011894.1_5606774_5608025_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|364aa|down_0|NC_011894.1_5610827_5611919_+	PRK09354, recA, recombinase A; Provisional	NA|887aa|down_1|NC_011894.1_5612681_5615342_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|185aa|down_2|NC_011894.1_5615613_5616168_+	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|350aa|down_3|NC_011894.1_5616192_5617242_+	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|304aa|down_4|NC_011894.1_5617253_5618165_+	pfam04321, RmlD_sub_bind, RmlD substrate binding domain	NA|297aa|down_5|NC_011894.1_5618161_5619052_+	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|511aa|down_6|NC_011894.1_5619336_5620869_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|307aa|down_7|NC_011894.1_5620885_5621806_-	COG1408, COG1408, Predicted phosphohydrolases [General function prediction only]	NA|68aa|down_8|NC_011894.1_5622043_5622247_-	NA	NA|461aa|down_9|NC_011894.1_5622559_5623942_-	PRK06105, PRK06105, aminotransferase; Provisional
GCF_000022085.1_ASM2208v1	NC_011894	Methylobacterium nodulans ORS 2060, complete genome	9	6088406-6089164	9,4,5	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e	Orphan	GTTTCAATCCGCGCCCCCGTGAGAGGGCGAC,GTTTCAATCCGCGCCCCCGTGAGAGGGCGACN,GTTTCAATCCGCGCCCCCGTGAGAGGGCGAC	31,32,31	2	8	6088569-6088603|6088569-6088603|6088569-6088603|6088569-6088603|6088569-6088603|6088569-6088603|6089033-6089067|6089033-6089067	NC_011894.1_3648834-3648868|NC_011894.1_4127589-4127623|NC_011894.1_5123478-5123512|NC_011894.1_5859841-5859875|NC_011894.1_3966828-3966794|NC_011894.1_6340589-6340623|NC_011894.1_7093559-7093525|NC_011894.1_6341954-6341988	NA:NA:NA	10,11,10	11	Orphan	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA,NA|122aa|down_2|NC_011894.1_6091404_6091770_-,NA|237aa|down_3|NC_011894.1_6091750_6092461_-	NA|245aa|up_9|NC_011894.1_6079464_6080199_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|247aa|up_8|NC_011894.1_6080179_6080920_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|316aa|up_7|NC_011894.1_6081035_6081983_+	TIGR04559, metallo-beta-lactamase_family_protein, quinoprotein relay system zinc metallohydrolase 2	NA|601aa|up_6|NC_011894.1_6082435_6084238_+	cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF)	NA|204aa|up_5|NC_011894.1_6084510_6085122_+	TIGR03874, 4cys_cytochr, c-type cytochrome, methanol metabolism-related	NA|289aa|up_4|NC_011894.1_6085121_6085988_+	TIGR03871, extracellular_solute-binding_protein_family_3, quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein	NA|178aa|up_3|NC_011894.1_6085984_6086518_+	TIGR03865, PQQ_CXXCW, PQQ-dependent catabolism-associated CXXCW motif protein	NA|172aa|up_2|NC_011894.1_6086536_6087052_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|123aa|up_1|NC_011894.1_6087044_6087413_-	COG1539, FolB, Dihydroneopterin aldolase [Coenzyme metabolism]	NA|280aa|up_0|NC_011894.1_6087412_6088252_-	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|267aa|down_0|NC_011894.1_6089508_6090309_+	TIGR04557, hypothetical_protein, quinoprotein dehydrogenase-associated SoxYZ-like carrier	NA|309aa|down_1|NC_011894.1_6090309_6091236_-	pfam04199, Cyclase, Putative cyclase	NA|122aa|down_2|NC_011894.1_6091404_6091770_-	NA	NA|237aa|down_3|NC_011894.1_6091750_6092461_-	NA	NA|380aa|down_4|NC_011894.1_6092457_6093597_-	PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein PqqE; Provisional	NA|100aa|down_5|NC_011894.1_6093607_6093907_-	TIGR03859, PQQ_PqqD, coenzyme PQQ biosynthesis protein PqqD	NA|267aa|down_6|NC_011894.1_6093903_6094704_-	PRK05157, PRK05157, pyrroloquinoline quinone biosynthesis protein PqqC; Provisional	NA|300aa|down_7|NC_011894.1_6095090_6095990_-	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	NA|30aa|down_8|NC_011894.1_6096037_6096127_-	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA	NA|30aa|down_9|NC_011894.1_6096205_6096295_-	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA
GCF_000022085.1_ASM2208v1	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	1	252367-252536	1	CRISPRCasFinder	no		c2c10_CAS-V-U3	Orphan	GCGCTTGATCCGGACAAGGACGG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas12b,cas2,cas4,cas3,cas7b,cas5,csa3,csm3gr7,RT,cas7,cas1,cas6e,cse2gr11,cas8e,c2c10_CAS-V-U3	NA|77aa|up_7|NC_011887.1_244011_244242_-,NA|52aa|up_3|NC_011887.1_247791_247947_+,NA|153aa|up_2|NC_011887.1_248180_248639_+,NA|119aa|down_0|NC_011887.1_253706_254063_-,NA|169aa|down_2|NC_011887.1_254828_255335_-,NA|202aa|down_6|NC_011887.1_257806_258412_-,NA|311aa|down_8|NC_011887.1_259466_260399_-	NA|507aa|up_9|NC_011887.1_241083_242604_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|301aa|up_8|NC_011887.1_242706_243609_-	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional	NA|77aa|up_7|NC_011887.1_244011_244242_-	NA	NA|226aa|up_6|NC_011887.1_244392_245070_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|215aa|up_5|NC_011887.1_245227_245872_+	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|336aa|up_4|NC_011887.1_245880_246888_+	pfam01384, PHO4, Phosphate transporter family	NA|52aa|up_3|NC_011887.1_247791_247947_+	NA	NA|153aa|up_2|NC_011887.1_248180_248639_+	NA	NA|826aa|up_1|NC_011887.1_248912_251390_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|218aa|up_0|NC_011887.1_251418_252072_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|119aa|down_0|NC_011887.1_253706_254063_-	NA	NA|212aa|down_1|NC_011887.1_254130_254766_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|169aa|down_2|NC_011887.1_254828_255335_-	NA	NA|315aa|down_3|NC_011887.1_255331_256276_-	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|176aa|down_4|NC_011887.1_256275_256803_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|298aa|down_5|NC_011887.1_256805_257699_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|202aa|down_6|NC_011887.1_257806_258412_-	NA	NA|354aa|down_7|NC_011887.1_258408_259470_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|311aa|down_8|NC_011887.1_259466_260399_-	NA	NA|295aa|down_9|NC_011887.1_260410_261295_-	pfam01882, DUF58, Protein of unknown function DUF58
