The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	3000694	83983	142967	3000694	tRNA,coat,transposase	Cafeteria_roenbergensis_virus(20.0%)	54	NA	NA
WP_012669629.1|83983_84889_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012669630.1|85018_86458_+	dihydropyrimidinase	NA	NA	NA	NA	NA
WP_012669631.1|86545_87532_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_012669632.1|87695_89117_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_012669633.1|89258_90743_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_012669634.1|90812_91277_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_012669635.1|91444_92938_+	glycogen synthase GlgA	NA	NA	NA	NA	NA
WP_012669636.1|92974_93499_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_012669637.1|93644_94442_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012669638.1|94466_95252_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012669639.1|95345_96632_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_012669640.1|96814_97243_+	PepSY-like domain-containing protein	NA	NA	NA	NA	NA
WP_012669641.1|97305_99681_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_012669642.1|99741_100266_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_044555145.1|100256_100820_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012669644.1|101437_102253_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	46.4	2.8e-51
WP_012669645.1|102742_103423_+|coat	spore coat protein	coat	NA	NA	NA	NA
WP_012669646.1|103412_103802_+	GIY-YIG nuclease family protein	NA	G0T5A8	Wiseana_iridescent_virus	36.0	5.0e-06
WP_012669647.1|103859_104657_+	transketolase	NA	NA	NA	NA	NA
WP_012669648.1|104698_105616_+	transketolase family protein	NA	NA	NA	NA	NA
WP_012669649.1|105693_105873_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_012669650.1|105892_106108_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_012669651.1|106187_106718_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_012669652.1|106858_107761_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_012669653.1|107775_108117_+	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_012669654.1|108110_109076_-	HPr(Ser) kinase/phosphatase	NA	NA	NA	NA	NA
WP_012669655.1|109075_109540_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_020064371.1|109577_110354_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_012669657.1|110370_111675_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_012669658.1|111667_114958_-	DUF4132 domain-containing protein	NA	NA	NA	NA	NA
WP_020064373.1|115033_115870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012669660.1|115937_116696_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012669661.1|116772_117522_-	uracil-DNA glycosylase	NA	A0A127AW33	Bacillus_phage	36.2	8.1e-21
WP_012669662.1|117833_118697_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012669663.1|118754_120260_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012669664.1|120509_121415_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012669665.1|121519_123367_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.8	8.9e-61
WP_020064377.1|123647_124835_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
WP_012669667.1|125011_125788_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_012669668.1|125875_126718_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_012669669.1|127021_127396_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_080513314.1|127447_127783_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_186290423.1|127950_128793_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_012669672.1|128963_130112_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_012669673.1|130352_131240_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_012669674.1|131255_132596_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_012669675.1|132738_133656_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_012669676.1|133796_134609_+	DUF4037 domain-containing protein	NA	NA	NA	NA	NA
WP_012669677.1|134721_135741_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	31.4	9.3e-20
WP_012669678.1|135913_138337_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_012669679.1|138363_138762_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_012669680.1|138922_140764_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_012669681.1|140782_141901_-	SPASM domain-containing protein	NA	NA	NA	NA	NA
WP_012669682.1|142097_142967_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	3000694	2350266	2358216	3000694		uncultured_virus(33.33%)	11	NA	NA
WP_012671544.1|2350266_2351532_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	30.8	5.7e-35
WP_012671545.1|2351659_2353015_+	signal recognition particle protein	NA	D6PHS7	uncultured_phage	31.7	4.6e-06
WP_020064809.1|2353037_2353397_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_008726607.1|2353429_2353672_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_044555373.1|2353668_2354178_+	16S rRNA processing protein RimM	NA	NA	NA	NA	NA
WP_012671548.1|2354304_2354976_+	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	34.2	1.6e-12
WP_012671549.1|2355090_2355576_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	49.3	1.7e-32
WP_012671550.1|2355581_2355863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012671551.1|2355866_2357093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012671552.1|2357324_2357591_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	36.1	4.4e-06
WP_012671553.1|2357703_2358216_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	44.7	2.6e-31
