assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	1	531506-531598	1	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	GAGGAAGTATCAAATAAAGATTCAGAG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3	NA|204aa|up_5|NC_012225.1_504528_505140_-,NA|677aa|up_0|NC_012225.1_509878_511909_-,NA|247aa|down_0|NC_012225.1_536190_536931_-,NA|274aa|down_1|NC_012225.1_536933_537755_-	NA|233aa|up_9|NC_012225.1_499599_500298_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|704aa|up_8|NC_012225.1_500446_502558_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|343aa|up_7|NC_012225.1_502632_503661_-	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional	NA|225aa|up_6|NC_012225.1_503721_504396_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|204aa|up_5|NC_012225.1_504528_505140_-	NA	NA|330aa|up_4|NC_012225.1_505344_506334_+	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|333aa|up_3|NC_012225.1_506438_507437_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|336aa|up_2|NC_012225.1_507514_508522_-	pfam02618, YceG, YceG-like family	NA|417aa|up_1|NC_012225.1_508600_509851_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|677aa|up_0|NC_012225.1_509878_511909_-	NA	NA|247aa|down_0|NC_012225.1_536190_536931_-	NA	NA|274aa|down_1|NC_012225.1_536933_537755_-	NA	NA|145aa|down_2|NC_012225.1_537801_538236_-	PRK00601, dut, dUTP diphosphatase	NA|461aa|down_3|NC_012225.1_538284_539667_-	pfam02447, GntP_permease, GntP family permease	NA|104aa|down_4|NC_012225.1_539706_540018_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|302aa|down_5|NC_012225.1_540177_541083_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|340aa|down_6|NC_012225.1_541266_542286_-	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|1939aa|down_7|NC_012225.1_542672_548489_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|380aa|down_8|NC_012225.1_548675_549815_-	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|606aa|down_9|NC_012225.1_549937_551755_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	2	891967-892590	2	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	CCAATTATTTAAAGGCTGATTAAA	24	0	0	NA	NA	NA	8	8	Orphan	WYL,DinG,cas4,csa3	NA|184aa|up_8|NC_012225.1_877203_877755_+,NA|343aa|up_3|NC_012225.1_883822_884851_-,NA|214aa|down_8|NC_012225.1_909332_909974_-	NA|391aa|up_9|NC_012225.1_876004_877177_+	sd00006, TPR, Tetratricopeptide repeat	NA|184aa|up_8|NC_012225.1_877203_877755_+	NA	NA|301aa|up_7|NC_012225.1_877757_878660_-	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|635aa|up_6|NC_012225.1_878677_880582_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|542aa|up_5|NC_012225.1_880982_882608_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|332aa|up_4|NC_012225.1_882704_883700_-	cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains	NA|343aa|up_3|NC_012225.1_883822_884851_-	NA	NA|231aa|up_2|NC_012225.1_885038_885731_+	sd00006, TPR, Tetratricopeptide repeat	NA|565aa|up_1|NC_012225.1_885768_887463_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|864aa|up_0|NC_012225.1_887533_890125_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|798aa|down_0|NC_012225.1_893218_895612_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|289aa|down_1|NC_012225.1_895846_896713_-	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|805aa|down_2|NC_012225.1_896820_899235_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|858aa|down_3|NC_012225.1_899732_902306_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|452aa|down_4|NC_012225.1_902547_903903_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|221aa|down_5|NC_012225.1_904043_904706_-	PRK08087, PRK08087, L-fuculose-phosphate aldolase	NA|540aa|down_6|NC_012225.1_904968_906588_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|685aa|down_7|NC_012225.1_907119_909174_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|214aa|down_8|NC_012225.1_909332_909974_-	NA	NA|51aa|down_9|NC_012225.1_909975_910128_-	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	3	1412596-1412928	3	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	AAAGCTGAGGCAGATGCAAAAGCT	24	0	0	NA	NA	NA	5	5	Orphan	WYL,DinG,cas4,csa3	NA|72aa|up_9|NC_012225.1_1401832_1402048_+,NA|178aa|up_6|NC_012225.1_1404573_1405107_-,NA|207aa|up_0|NC_012225.1_1411346_1411967_+,NA|110aa|down_2|NC_012225.1_1417508_1417838_-	NA|72aa|up_9|NC_012225.1_1401832_1402048_+	NA	NA|104aa|up_8|NC_012225.1_1402289_1402601_+	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|560aa|up_7|NC_012225.1_1402706_1404386_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|178aa|up_6|NC_012225.1_1404573_1405107_-	NA	NA|267aa|up_5|NC_012225.1_1405266_1406067_+	pfam16258, DUF4912, Domain of unknown function (DUF4912)	NA|582aa|up_4|NC_012225.1_1406140_1407886_-	cd13944, lytB_ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA|64aa|up_3|NC_012225.1_1407917_1408109_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|305aa|up_2|NC_012225.1_1408506_1409421_+	cd00954, NAL, N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL)	NA|467aa|up_1|NC_012225.1_1409665_1411066_+	PRK12831, PRK12831, putative oxidoreductase; Provisional	NA|207aa|up_0|NC_012225.1_1411346_1411967_+	NA	NA|188aa|down_0|NC_012225.1_1414211_1414775_+	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease	NA|829aa|down_1|NC_012225.1_1414868_1417355_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|110aa|down_2|NC_012225.1_1417508_1417838_-	NA	NA|191aa|down_3|NC_012225.1_1417834_1418407_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|615aa|down_4|NC_012225.1_1418487_1420332_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|441aa|down_5|NC_012225.1_1420348_1421671_-	TIGR01125, Ribosomal_protein_S12_methylthiotransferase_RimO, ribosomal protein S12 methylthiotransferase RimO	NA|456aa|down_6|NC_012225.1_1421736_1423104_-	pfam13413, HTH_25, Helix-turn-helix domain	NA|241aa|down_7|NC_012225.1_1423118_1423841_-	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]	NA|79aa|down_8|NC_012225.1_1424154_1424391_+	pfam11950, DUF3467, Protein of unknown function (DUF3467)	NA|124aa|down_9|NC_012225.1_1424416_1424788_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	4	1623258-1623433	1	PILER-CR	no		WYL,DinG,cas4,csa3	Orphan	ATGAAGATAATGATGAAGATGAAAAAATAAAATTAGAAAAT	41	0	0	NA	NA	NA	2	2	Orphan	WYL,DinG,cas4,csa3	NA|111aa|up_6|NC_012225.1_1613843_1614176_+,NA|338aa|up_4|NC_012225.1_1615433_1616447_-,NA|119aa|up_3|NC_012225.1_1616728_1617085_+,NA|88aa|down_0|NC_012225.1_1625634_1625898_+	NA|2961aa|up_9|NC_012225.1_1603959_1612842_-	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|106aa|up_8|NC_012225.1_1612844_1613162_-	pfam10531, SLBB, SLBB domain	NA|158aa|up_7|NC_012225.1_1613365_1613839_+	cd17906, CheX, chemotaxis phosphatase CheX	NA|111aa|up_6|NC_012225.1_1613843_1614176_+	NA	NA|380aa|up_5|NC_012225.1_1614177_1615317_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|338aa|up_4|NC_012225.1_1615433_1616447_-	NA	NA|119aa|up_3|NC_012225.1_1616728_1617085_+	NA	NA|597aa|up_2|NC_012225.1_1617079_1618870_-	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	NA|201aa|up_1|NC_012225.1_1618880_1619483_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|701aa|up_0|NC_012225.1_1619995_1622098_+	PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional	NA|88aa|down_0|NC_012225.1_1625634_1625898_+	NA	NA|266aa|down_1|NC_012225.1_1625910_1626708_+	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|370aa|down_2|NC_012225.1_1626829_1627939_+	pfam01264, Chorismate_synt, Chorismate synthase	NA|465aa|down_3|NC_012225.1_1628023_1629418_+	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|261aa|down_4|NC_012225.1_1629420_1630203_+	pfam03309, Pan_kinase, Type III pantothenate kinase	NA|89aa|down_5|NC_012225.1_1630394_1630661_+	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|582aa|down_6|NC_012225.1_1630692_1632438_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|291aa|down_7|NC_012225.1_1632503_1633376_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|267aa|down_8|NC_012225.1_1633391_1634192_-	PRK06667, motB, flagellar motor protein MotB; Validated	NA|264aa|down_9|NC_012225.1_1634210_1635002_-	COG1291, MotA, Flagellar motor component [Cell motility and secretion]
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	5	1885151-1885252	4	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	TTGCTAATAAAAATTGTTCGCTTATAA	27	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3	NA|331aa|up_8|NC_012225.1_1874119_1875112_-,NA|126aa|up_4|NC_012225.1_1880031_1880409_+,NA|249aa|up_0|NC_012225.1_1884399_1885146_-,NA|190aa|down_0|NC_012225.1_1885336_1885906_-,NA|349aa|down_5|NC_012225.1_1890763_1891810_-	NA|432aa|up_9|NC_012225.1_1872831_1874127_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|331aa|up_8|NC_012225.1_1874119_1875112_-	NA	NA|617aa|up_7|NC_012225.1_1875328_1877179_+	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|588aa|up_6|NC_012225.1_1877222_1878986_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|206aa|up_5|NC_012225.1_1879389_1880007_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|126aa|up_4|NC_012225.1_1880031_1880409_+	NA	NA|84aa|up_3|NC_012225.1_1880624_1880876_+	pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872	NA|768aa|up_2|NC_012225.1_1880951_1883255_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|224aa|up_1|NC_012225.1_1883391_1884063_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|249aa|up_0|NC_012225.1_1884399_1885146_-	NA	NA|190aa|down_0|NC_012225.1_1885336_1885906_-	NA	NA|618aa|down_1|NC_012225.1_1886205_1888059_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|384aa|down_2|NC_012225.1_1888314_1889466_+	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional	NA|204aa|down_3|NC_012225.1_1889682_1890294_+	PRK00698, tmk, thymidylate kinase; Validated	NA|139aa|down_4|NC_012225.1_1890262_1890679_-	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|349aa|down_5|NC_012225.1_1890763_1891810_-	NA	NA|297aa|down_6|NC_012225.1_1891969_1892860_+	pfam07728, AAA_5, AAA domain (dynein-related subfamily)	NA|601aa|down_7|NC_012225.1_1892903_1894706_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|258aa|down_8|NC_012225.1_1895522_1896296_-	sd00006, TPR, Tetratricopeptide repeat	NA|223aa|down_9|NC_012225.1_1897005_1897674_-	cd07064, AlkD_like_1, A new structural DNA glycosylase containing HEAT-like repeats
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	6	2092913-2093001	5	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	ATTATGATGACTATGAAGATGATTAT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3	NA|167aa|up_8|NC_012225.1_2082471_2082972_-,NA|373aa|up_7|NC_012225.1_2083211_2084330_+,NA|106aa|up_2|NC_012225.1_2090040_2090358_-,NA|67aa|up_0|NC_012225.1_2092432_2092633_+,NA|171aa|down_0|NC_012225.1_2093236_2093749_+,NA|58aa|down_3|NC_012225.1_2096037_2096211_-,NA|532aa|down_7|NC_012225.1_2102640_2104236_-,NA|265aa|down_8|NC_012225.1_2104250_2105045_-	NA|181aa|up_9|NC_012225.1_2081936_2082479_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|167aa|up_8|NC_012225.1_2082471_2082972_-	NA	NA|373aa|up_7|NC_012225.1_2083211_2084330_+	NA	NA|299aa|up_6|NC_012225.1_2084618_2085515_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|660aa|up_5|NC_012225.1_2085734_2087714_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|219aa|up_4|NC_012225.1_2088057_2088714_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|276aa|up_3|NC_012225.1_2088783_2089611_-	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|106aa|up_2|NC_012225.1_2090040_2090358_-	NA	NA|538aa|up_1|NC_012225.1_2090520_2092134_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|67aa|up_0|NC_012225.1_2092432_2092633_+	NA	NA|171aa|down_0|NC_012225.1_2093236_2093749_+	NA	NA|428aa|down_1|NC_012225.1_2094314_2095598_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|87aa|down_2|NC_012225.1_2095780_2096041_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|58aa|down_3|NC_012225.1_2096037_2096211_-	NA	NA|772aa|down_4|NC_012225.1_2096490_2098806_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|352aa|down_5|NC_012225.1_2100364_2101420_+	PRK09736, PRK09736, 5-methylcytosine-specific restriction enzyme subunit McrC; Provisional	NA|388aa|down_6|NC_012225.1_2101440_2102604_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|532aa|down_7|NC_012225.1_2102640_2104236_-	NA	NA|265aa|down_8|NC_012225.1_2104250_2105045_-	NA	NA|729aa|down_9|NC_012225.1_2105642_2107829_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	7	2242548-2242649	6	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	AAAAGGCCTTAAATGCCGGACGTGATGC	28	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3	NA|371aa|up_9|NC_012225.1_2226602_2227715_-,NA|168aa|down_0|NC_012225.1_2242879_2243383_-,NA|214aa|down_2|NC_012225.1_2244550_2245192_+,NA|388aa|down_7|NC_012225.1_2249319_2250483_-	NA|371aa|up_9|NC_012225.1_2226602_2227715_-	NA	NA|582aa|up_8|NC_012225.1_2227815_2229561_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|346aa|up_7|NC_012225.1_2230052_2231090_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|755aa|up_6|NC_012225.1_2231104_2233369_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|409aa|up_5|NC_012225.1_2233860_2235087_+	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|468aa|up_4|NC_012225.1_2235428_2236832_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|801aa|up_3|NC_012225.1_2237358_2239761_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|78aa|up_2|NC_012225.1_2240006_2240240_+	PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed	NA|353aa|up_1|NC_012225.1_2240239_2241298_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|245aa|up_0|NC_012225.1_2241294_2242029_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|168aa|down_0|NC_012225.1_2242879_2243383_-	NA	NA|291aa|down_1|NC_012225.1_2243536_2244409_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|214aa|down_2|NC_012225.1_2244550_2245192_+	NA	NA|207aa|down_3|NC_012225.1_2245249_2245870_-	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism]	NA|334aa|down_4|NC_012225.1_2245881_2246883_-	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|195aa|down_5|NC_012225.1_2246957_2247542_-	COG1329, COG1329, Transcriptional regulators, similar to M	NA|466aa|down_6|NC_012225.1_2247795_2249193_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|388aa|down_7|NC_012225.1_2249319_2250483_-	NA	NA|242aa|down_8|NC_012225.1_2251272_2251998_-	pfam14025, DUF4241, Protein of unknown function (DUF4241)	NA|602aa|down_9|NC_012225.1_2252064_2253870_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	8	2493169-2493265	7	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	CAATTTTTATTAGCAACAATATAAAA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3	NA,NA|139aa|down_3|NC_012225.1_2496479_2496896_-	NA|243aa|up_9|NC_012225.1_2484642_2485371_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|112aa|up_8|NC_012225.1_2485667_2486003_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|304aa|up_7|NC_012225.1_2486164_2487076_+	pfam00119, ATP-synt_A, ATP synthase A chain	NA|74aa|up_6|NC_012225.1_2487112_2487334_+	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c	NA|168aa|up_5|NC_012225.1_2487369_2487873_+	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b	NA|183aa|up_4|NC_012225.1_2487909_2488458_+	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|214aa|up_3|NC_012225.1_2488483_2489125_+	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|500aa|up_2|NC_012225.1_2489151_2490651_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|293aa|up_1|NC_012225.1_2490714_2491593_+	pfam00231, ATP-synt, ATP synthase	NA|247aa|up_0|NC_012225.1_2492235_2492976_+	sd00045, ANK, ankyrin repeats	NA|254aa|down_0|NC_012225.1_2493323_2494085_+	sd00045, ANK, ankyrin repeats	NA|254aa|down_1|NC_012225.1_2494315_2495077_+	sd00045, ANK, ankyrin repeats	NA|237aa|down_2|NC_012225.1_2495310_2496021_+	sd00045, ANK, ankyrin repeats	NA|139aa|down_3|NC_012225.1_2496479_2496896_-	NA	NA|184aa|down_4|NC_012225.1_2496901_2497453_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|303aa|down_5|NC_012225.1_2497605_2498514_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|393aa|down_6|NC_012225.1_2498720_2499899_+	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|720aa|down_7|NC_012225.1_2500181_2502341_+	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|602aa|down_8|NC_012225.1_2502499_2504305_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|180aa|down_9|NC_012225.1_2504359_2504899_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain
GCF_000022105.1_ASM2210v1	NC_012225	Brachyspira hyodysenteriae WA1, complete sequence	9	2922985-2923084	8	CRISPRCasFinder	no		WYL,DinG,cas4,csa3	Orphan	TTAATAAAAATATATCATTATAA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas4,csa3	NA,NA|68aa|down_7|NC_012225.1_2932383_2932587_-	NA|965aa|up_9|NC_012225.1_2908385_2911280_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|128aa|up_8|NC_012225.1_2911392_2911776_+	pfam10135, Rod-binding, Rod binding protein	NA|148aa|up_7|NC_012225.1_2911812_2912256_+	pfam10825, DUF2752, Protein of unknown function (DUF2752)	NA|447aa|up_6|NC_012225.1_2912362_2913703_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|921aa|up_5|NC_012225.1_2913758_2916521_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|180aa|up_4|NC_012225.1_2917196_2917736_+	pfam04229, GrpB, GrpB protein	NA|316aa|up_3|NC_012225.1_2917845_2918793_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|717aa|up_2|NC_012225.1_2918738_2920889_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|427aa|up_1|NC_012225.1_2920931_2922212_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|238aa|up_0|NC_012225.1_2922208_2922922_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NC_012225.1_2926592_2927711_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|330aa|down_1|NC_012225.1_2927740_2928730_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|217aa|down_2|NC_012225.1_2928795_2929446_+	pfam00302, CAT, Chloramphenicol acetyltransferase	NA|414aa|down_3|NC_012225.1_2929573_2930815_+	NF033164, lipo_LipL46, lipoprotein LipL46	NA|182aa|down_4|NC_012225.1_2930825_2931371_+	pfam02677, DUF208, Uncharacterized BCR, COG1636	NA|121aa|down_5|NC_012225.1_2931380_2931743_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|63aa|down_6|NC_012225.1_2931946_2932135_-	pfam14070, YjfB_motility, Putative motility protein	NA|68aa|down_7|NC_012225.1_2932383_2932587_-	NA	NA|563aa|down_8|NC_012225.1_2932841_2934530_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|202aa|down_9|NC_012225.1_2934707_2935313_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
