assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	1	384800-385111	1,2	PILER-CR,PILER-CR	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ATCACAAATAGTACATTCTCGAACAACGCAGCAACCACCAGCGGCGG,GGAATCTACAACGACACCAACGGCACGCTGACTATCACGAACAGCACGCTCTCGA	47,55	0	0	NA	NA	NA:NA	4,4	4	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|73aa|up_8|NC_012032.1_375120_375339_-,NA|50aa|up_5|NC_012032.1_378281_378431_+,NA|329aa|up_0|NC_012032.1_383149_384136_+,NA|604aa|down_0|NC_012032.1_388210_390022_+,NA|97aa|down_1|NC_012032.1_390032_390323_+,NA|87aa|down_6|NC_012032.1_395334_395595_-	NA|504aa|up_9|NC_012032.1_373349_374861_-	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	NA|73aa|up_8|NC_012032.1_375120_375339_-	NA	NA|79aa|up_7|NC_012032.1_375486_375723_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|508aa|up_6|NC_012032.1_375888_377412_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|50aa|up_5|NC_012032.1_378281_378431_+	NA	NA|347aa|up_4|NC_012032.1_378484_379525_-	cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants	NA|477aa|up_3|NC_012032.1_379887_381318_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|165aa|up_2|NC_012032.1_381480_381975_+	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|303aa|up_1|NC_012032.1_382212_383121_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|329aa|up_0|NC_012032.1_383149_384136_+	NA	NA|604aa|down_0|NC_012032.1_388210_390022_+	NA	NA|97aa|down_1|NC_012032.1_390032_390323_+	NA	NA|191aa|down_2|NC_012032.1_390535_391108_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|261aa|down_3|NC_012032.1_391384_392167_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|791aa|down_4|NC_012032.1_392539_394912_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|136aa|down_5|NC_012032.1_394908_395316_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|87aa|down_6|NC_012032.1_395334_395595_-	NA	NA|106aa|down_7|NC_012032.1_395714_396032_-	pfam13591, MerR_2, MerR HTH family regulatory protein	NA|397aa|down_8|NC_012032.1_396050_397241_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|309aa|down_9|NC_012032.1_397379_398306_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	2	387184-387256	1	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TGACGAGCGCGCCGGAGGCGCGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|73aa|up_9|NC_012032.1_375120_375339_-,NA|50aa|up_6|NC_012032.1_378281_378431_+,NA|329aa|up_1|NC_012032.1_383149_384136_+,NA|604aa|down_0|NC_012032.1_388210_390022_+,NA|97aa|down_1|NC_012032.1_390032_390323_+,NA|87aa|down_6|NC_012032.1_395334_395595_-	NA|73aa|up_9|NC_012032.1_375120_375339_-	NA	NA|79aa|up_8|NC_012032.1_375486_375723_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|508aa|up_7|NC_012032.1_375888_377412_+	smart00857, Resolvase, Resolvase, N terminal domain	NA|50aa|up_6|NC_012032.1_378281_378431_+	NA	NA|347aa|up_5|NC_012032.1_378484_379525_-	cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants	NA|477aa|up_4|NC_012032.1_379887_381318_+	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|165aa|up_3|NC_012032.1_381480_381975_+	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|303aa|up_2|NC_012032.1_382212_383121_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|329aa|up_1|NC_012032.1_383149_384136_+	NA	NA|730aa|up_0|NC_012032.1_384318_386508_+	pfam13229, Beta_helix, Right handed beta helix region	NA|604aa|down_0|NC_012032.1_388210_390022_+	NA	NA|97aa|down_1|NC_012032.1_390032_390323_+	NA	NA|191aa|down_2|NC_012032.1_390535_391108_-	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|261aa|down_3|NC_012032.1_391384_392167_-	pfam13462, Thioredoxin_4, Thioredoxin	NA|791aa|down_4|NC_012032.1_392539_394912_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|136aa|down_5|NC_012032.1_394908_395316_-	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]	NA|87aa|down_6|NC_012032.1_395334_395595_-	NA	NA|106aa|down_7|NC_012032.1_395714_396032_-	pfam13591, MerR_2, MerR HTH family regulatory protein	NA|397aa|down_8|NC_012032.1_396050_397241_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|309aa|down_9|NC_012032.1_397379_398306_-	PRK14299, PRK14299, chaperone protein DnaJ; Provisional
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	3	550955-551072	2	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CATTGGCTAACGCTACCGGTGAGGGTGCGGCAG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|65aa|up_5|NC_012032.1_543134_543329_+,NA|82aa|up_0|NC_012032.1_550483_550729_+,NA	NA|163aa|up_9|NC_012032.1_539343_539832_+	pfam07284, BCHF, 2-vinyl bacteriochlorophyllide hydratase (BCHF)	NA|330aa|up_8|NC_012032.1_539892_540882_+	TIGR01202, bchC, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase	NA|412aa|up_7|NC_012032.1_540934_542170_+	TIGR02016, Chlorophyllide_reductase_35	NA|251aa|up_6|NC_012032.1_542376_543129_+	pfam02596, DUF169, Uncharacterized ArCR, COG2043	NA|65aa|up_5|NC_012032.1_543134_543329_+	NA	NA|371aa|up_4|NC_012032.1_543467_544580_+	TIGR02030, Magnesium-chelatase_subunit_ChlI, magnesium chelatase ATPase subunit I	NA|635aa|up_3|NC_012032.1_544634_546539_+	TIGR02031, Magnesium-chelatase_67_kDa_subunit, magnesium chelatase ATPase subunit D	NA|498aa|up_2|NC_012032.1_547741_549235_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|386aa|up_1|NC_012032.1_549311_550469_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|82aa|up_0|NC_012032.1_550483_550729_+	NA	NA|256aa|down_0|NC_012032.1_551172_551940_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|330aa|down_1|NC_012032.1_552312_553302_-	pfam09084, NMT1, NMT1/THI5 like	NA|273aa|down_2|NC_012032.1_553301_554120_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|98aa|down_3|NC_012032.1_554112_554406_-	pfam01910, Thiamine_BP, Thiamine-binding protein	NA|263aa|down_4|NC_012032.1_554996_555785_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|146aa|down_5|NC_012032.1_555904_556342_+	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV	NA|628aa|down_6|NC_012032.1_556470_558354_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|313aa|down_7|NC_012032.1_558369_559308_-	pfam04203, Sortase, Sortase family	NA|381aa|down_8|NC_012032.1_559446_560589_-	cd00609, AAT_like, Aspartate aminotransferase family	NA|347aa|down_9|NC_012032.1_560592_561633_-	TIGR03617, F420_MSMEG_2256, probable F420-dependent oxidoreductase, MSMEG_2256 family
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	4	709669-731306	3,1,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Type III-A,Type III-B,Type III-D,Type III-C	GTTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG,TTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAGN,GTTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG,TTTCAATCCCCTCGCGGGGATTTTGGTTTTTTGAAG	37,37,37,36	0	0	NA	NA	NA:NA:NA:NA	276,276,273,273	276	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|86aa|up_6|NC_012032.1_702183_702441_-,NA|146aa|up_5|NC_012032.1_702530_702968_-,NA|57aa|up_4|NC_012032.1_703440_703611_+,csx1|485aa|down_4|NC_012032.1_735514_736969_-,csx1|491aa|down_5|NC_012032.1_736965_738438_-	NA|563aa|up_9|NC_012032.1_696710_698399_+	pfam13229, Beta_helix, Right handed beta helix region	NA|326aa|up_8|NC_012032.1_699673_700651_+	pfam01916, DS, Deoxyhypusine synthase	NA|240aa|up_7|NC_012032.1_701451_702171_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|86aa|up_6|NC_012032.1_702183_702441_-	NA	NA|146aa|up_5|NC_012032.1_702530_702968_-	NA	NA|57aa|up_4|NC_012032.1_703440_703611_+	NA	NA|390aa|up_3|NC_012032.1_704510_705680_-	pfam11376, DUF3179, Protein of unknown function (DUF3179)	NA|494aa|up_2|NC_012032.1_706180_707662_+	PRK05326, PRK05326, potassium/proton antiporter	NA|217aa|up_1|NC_012032.1_707851_708502_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|182aa|up_0|NC_012032.1_708897_709443_+	smart00318, SNc, Staphylococcal nuclease homologues	NA|269aa|down_0|NC_012032.1_731491_732298_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	cas2|94aa|down_1|NC_012032.1_732342_732624_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|340aa|down_2|NC_012032.1_732643_733663_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas6|288aa|down_3|NC_012032.1_733640_734504_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csx1|485aa|down_4|NC_012032.1_735514_736969_-	NA	csx1|491aa|down_5|NC_012032.1_736965_738438_-	NA	csm5gr7|472aa|down_6|NC_012032.1_738434_739850_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|362aa|down_7|NC_012032.1_739858_740944_-	TIGR01903, Hypothetical_protein	csm3gr7|273aa|down_8|NC_012032.1_740961_741780_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|151aa|down_9|NC_012032.1_741797_742250_-	pfam03750, Csm2_III-A, Csm2 Type III-A
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	5	1115898-1116007	4	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CTTTCAGCGATTTCGACAGGCGCTATGCGAGTGGTTTC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|73aa|up_9|NC_012032.1_1106697_1106916_-,NA|93aa|up_7|NC_012032.1_1107748_1108027_-,NA|239aa|up_6|NC_012032.1_1108296_1109013_-,NA|356aa|up_4|NC_012032.1_1109607_1110675_-,NA|85aa|down_4|NC_012032.1_1124109_1124364_-	NA|73aa|up_9|NC_012032.1_1106697_1106916_-	NA	NA|240aa|up_8|NC_012032.1_1106920_1107640_-	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins	NA|93aa|up_7|NC_012032.1_1107748_1108027_-	NA	NA|239aa|up_6|NC_012032.1_1108296_1109013_-	NA	NA|198aa|up_5|NC_012032.1_1109009_1109603_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|356aa|up_4|NC_012032.1_1109607_1110675_-	NA	NA|223aa|up_3|NC_012032.1_1110699_1111368_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|269aa|up_2|NC_012032.1_1111959_1112766_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|352aa|up_1|NC_012032.1_1112797_1113853_+	pfam09084, NMT1, NMT1/THI5 like	NA|406aa|up_0|NC_012032.1_1114111_1115329_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|211aa|down_0|NC_012032.1_1116251_1116884_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|500aa|down_1|NC_012032.1_1116913_1118413_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|228aa|down_2|NC_012032.1_1118426_1119110_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|726aa|down_3|NC_012032.1_1121637_1123815_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|85aa|down_4|NC_012032.1_1124109_1124364_-	NA	NA|327aa|down_5|NC_012032.1_1124944_1125925_-	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)	NA|233aa|down_6|NC_012032.1_1125928_1126627_-	pfam02589, LUD_dom, LUD domain	NA|157aa|down_7|NC_012032.1_1126623_1127094_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|476aa|down_8|NC_012032.1_1127095_1128523_-	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	NA|250aa|down_9|NC_012032.1_1128583_1129333_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	6	1193021-1193152	5	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CTTCTACCGCATCAGGAAGCGCCAGCACAGCCCTCTCATC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA	NA|238aa|up_9|NC_012032.1_1178164_1178878_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|370aa|up_8|NC_012032.1_1178877_1179987_+	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|221aa|up_7|NC_012032.1_1180002_1180665_+	pfam14014, DUF4230, Protein of unknown function (DUF4230)	NA|218aa|up_6|NC_012032.1_1180683_1181337_+	pfam14014, DUF4230, Protein of unknown function (DUF4230)	NA|281aa|up_5|NC_012032.1_1181728_1182571_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|375aa|up_4|NC_012032.1_1182679_1183804_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|370aa|up_3|NC_012032.1_1184136_1185246_+	cd03795, GT4_WfcD-like, Escherichia coli alpha-1,3-mannosyltransferase WfcD and similar proteins	NA|449aa|up_2|NC_012032.1_1185300_1186647_+	cd05681, M20_dipept_Sso-CP2, uncharacterized M20 dipeptidase	NA|729aa|up_1|NC_012032.1_1187090_1189277_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|748aa|up_0|NC_012032.1_1189554_1191798_+	TIGR02478, ATP-dependent_6-phosphofructokinase, 6-phosphofructokinase, eukaryotic type	NA|177aa|down_0|NC_012032.1_1195864_1196395_-	TIGR00621, Single-stranded_DNA-binding_protein, single stranded DNA-binding protein (ssb)	NA|93aa|down_1|NC_012032.1_1196553_1196832_-	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|1504aa|down_2|NC_012032.1_1198987_1203499_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1228aa|down_3|NC_012032.1_1203795_1207479_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|467aa|down_4|NC_012032.1_1208062_1209463_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|234aa|down_5|NC_012032.1_1209486_1210188_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|157aa|down_6|NC_012032.1_1210291_1210762_-	COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|996aa|down_7|NC_012032.1_1210885_1213873_-	PRK06148, PRK06148, hypothetical protein; Provisional	NA|1989aa|down_8|NC_012032.1_1214084_1220051_-	TIGR02103, pullulanase-like_protein_starch, alpha-1,6-glucosidases, pullulanase-type	NA|312aa|down_9|NC_012032.1_1220454_1221390_-	TIGR00549, Mevalonate_kinase, mevalonate kinase
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	7	1328831-1328950	6	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGGGGCAGGCGATGGCGCCGGGGGTGGTGGTGA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|65aa|up_3|NC_012032.1_1326528_1326723_+,NA|108aa|up_1|NC_012032.1_1327232_1327556_-,NA|247aa|up_0|NC_012032.1_1327586_1328327_-,NA|117aa|down_3|NC_012032.1_1334132_1334483_+	NA|596aa|up_9|NC_012032.1_1316501_1318289_+	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|149aa|up_8|NC_012032.1_1318497_1318944_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|452aa|up_7|NC_012032.1_1319050_1320406_+	TIGR00665, DnaB, replicative DNA helicase	NA|579aa|up_6|NC_012032.1_1321679_1323416_+	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|283aa|up_5|NC_012032.1_1323443_1324292_+	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|489aa|up_4|NC_012032.1_1324928_1326395_-	pfam00171, Aldedh, Aldehyde dehydrogenase family	NA|65aa|up_3|NC_012032.1_1326528_1326723_+	NA	NA|152aa|up_2|NC_012032.1_1326719_1327175_-	pfam02657, SufE, Fe-S metabolism associated domain	NA|108aa|up_1|NC_012032.1_1327232_1327556_-	NA	NA|247aa|up_0|NC_012032.1_1327586_1328327_-	NA	NA|275aa|down_0|NC_012032.1_1330575_1331400_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|471aa|down_1|NC_012032.1_1331589_1333002_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|126aa|down_2|NC_012032.1_1333028_1333406_-	COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms]	NA|117aa|down_3|NC_012032.1_1334132_1334483_+	NA	NA|588aa|down_4|NC_012032.1_1334514_1336278_+	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins	NA|426aa|down_5|NC_012032.1_1336556_1337834_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|172aa|down_6|NC_012032.1_1337852_1338368_-	pfam02674, Colicin_V, Colicin V production protein	NA|693aa|down_7|NC_012032.1_1338674_1340753_+	COG2766, PrkA, Putative Ser protein kinase [Signal transduction mechanisms]	NA|370aa|down_8|NC_012032.1_1340852_1341962_+	PRK05325, PRK05325, hypothetical protein; Provisional	NA|775aa|down_9|NC_012032.1_1341986_1344311_+	pfam04293, SpoVR, SpoVR like protein
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	8	1357589-1357673	7	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CTCCTGCCGGGTGGCGCTGGGAGGGGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|625aa|up_6|NC_012032.1_1345525_1347400_-,NA|126aa|down_6|NC_012032.1_1368590_1368968_-	NA|370aa|up_9|NC_012032.1_1340852_1341962_+	PRK05325, PRK05325, hypothetical protein; Provisional	NA|775aa|up_8|NC_012032.1_1341986_1344311_+	pfam04293, SpoVR, SpoVR like protein	NA|316aa|up_7|NC_012032.1_1344551_1345499_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|625aa|up_6|NC_012032.1_1345525_1347400_-	NA	NA|517aa|up_5|NC_012032.1_1347396_1348947_-	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|238aa|up_4|NC_012032.1_1348985_1349699_-	PRK00023, cmk, (d)CMP kinase	NA|514aa|up_3|NC_012032.1_1349732_1351274_-	PRK00074, guaA, GMP synthase; Reviewed	NA|524aa|up_2|NC_012032.1_1352378_1353950_-	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|428aa|up_1|NC_012032.1_1353988_1355272_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|550aa|up_0|NC_012032.1_1355670_1357320_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|263aa|down_0|NC_012032.1_1357809_1358598_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|710aa|down_1|NC_012032.1_1358602_1360732_-	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|547aa|down_2|NC_012032.1_1360770_1362411_-	cd13879, CuRO_2_McoP_like, The second cupredoxin domain of multicopper oxidase McoP and similar proteins	NA|165aa|down_3|NC_012032.1_1362450_1362945_-	pfam00034, Cytochrom_C, Cytochrome c	NA|779aa|down_4|NC_012032.1_1363373_1365710_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|349aa|down_5|NC_012032.1_1367547_1368594_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|126aa|down_6|NC_012032.1_1368590_1368968_-	NA	NA|303aa|down_7|NC_012032.1_1368964_1369873_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|223aa|down_8|NC_012032.1_1369936_1370605_-	TIGR04283, glycosyl_transferase_family_2, transferase 2, rSAM/selenodomain-associated	NA|369aa|down_9|NC_012032.1_1370625_1371732_-	pfam01555, N6_N4_Mtase, DNA methylase
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	9	1479516-1479609	8	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CGCGCGCTCCCAGGGGGTGTGAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|57aa|down_5|NC_012032.1_1487487_1487658_+	NA|286aa|up_9|NC_012032.1_1463551_1464409_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|246aa|up_8|NC_012032.1_1464448_1465186_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|262aa|up_7|NC_012032.1_1465178_1465964_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|996aa|up_6|NC_012032.1_1466000_1468988_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|250aa|up_5|NC_012032.1_1468988_1469738_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|117aa|up_4|NC_012032.1_1469782_1470133_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|352aa|up_3|NC_012032.1_1470271_1471327_+	COG3597, COG3597, Uncharacterized protein/domain associated with GTPases [Function unknown]	NA|246aa|up_2|NC_012032.1_1472593_1473331_+	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|665aa|up_1|NC_012032.1_1473569_1475564_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|422aa|up_0|NC_012032.1_1475567_1476833_+	pfam08378, NERD, Nuclease-related domain	NA|277aa|down_0|NC_012032.1_1479948_1480779_+	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|207aa|down_1|NC_012032.1_1480848_1481469_+	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|679aa|down_2|NC_012032.1_1482974_1485011_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|241aa|down_3|NC_012032.1_1485245_1485968_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|347aa|down_4|NC_012032.1_1486233_1487274_-	PRK12858, PRK12858, tagatose 1,6-diphosphate aldolase; Reviewed	NA|57aa|down_5|NC_012032.1_1487487_1487658_+	NA	NA|578aa|down_6|NC_012032.1_1487765_1489499_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|818aa|down_7|NC_012032.1_1490974_1493428_-	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]	NA|275aa|down_8|NC_012032.1_1493451_1494276_-	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|620aa|down_9|NC_012032.1_1494372_1496232_-	PRK15098, PRK15098, beta-glucosidase BglX
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	10	1637506-1637742	9	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGCCCAACTGGCGCAGGCGCAGGC	24	0	0	NA	NA	NA	3	3	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|48aa|down_5|NC_012032.1_1646694_1646838_-,NA|407aa|down_6|NC_012032.1_1647941_1649162_-	NA|255aa|up_9|NC_012032.1_1617671_1618436_+	COG3375, COG3375, Uncharacterized conserved protein [Function unknown]	NA|680aa|up_8|NC_012032.1_1618716_1620756_+	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins	NA|1121aa|up_7|NC_012032.1_1620779_1624142_+	TIGR02456, Trehalose_synthase, trehalose synthase	NA|678aa|up_6|NC_012032.1_1624201_1626235_+	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|593aa|up_5|NC_012032.1_1626502_1628281_+	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase	NA|813aa|up_4|NC_012032.1_1628311_1630750_+	cd10797, GH57N_APU_like_1, N-terminal putative catalytic domain of mainly uncharacterized prokaryotic proteins similar to archaeal thermoactive amylopullulanases; glycoside hydrolase family 57 (GH57)	NA|986aa|up_3|NC_012032.1_1630746_1633704_+	PRK14511, PRK14511, malto-oligosyltrehalose synthase	NA|83aa|up_2|NC_012032.1_1634030_1634279_-	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]	NA|467aa|up_1|NC_012032.1_1634547_1635948_-	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|165aa|up_0|NC_012032.1_1636184_1636679_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|416aa|down_0|NC_012032.1_1639002_1640250_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|315aa|down_1|NC_012032.1_1640498_1641443_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|743aa|down_2|NC_012032.1_1641439_1643668_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|367aa|down_3|NC_012032.1_1643669_1644770_+	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated	NA|502aa|down_4|NC_012032.1_1644787_1646293_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|48aa|down_5|NC_012032.1_1646694_1646838_-	NA	NA|407aa|down_6|NC_012032.1_1647941_1649162_-	NA	NA|414aa|down_7|NC_012032.1_1649429_1650671_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|205aa|down_8|NC_012032.1_1650818_1651433_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|211aa|down_9|NC_012032.1_1651526_1652159_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	11	1650742-1650842	10	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TTAACCTTTCGCCACTGCGTAGTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|48aa|up_2|NC_012032.1_1646694_1646838_-,NA|407aa|up_1|NC_012032.1_1647941_1649162_-,NA	NA|165aa|up_9|NC_012032.1_1636184_1636679_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|607aa|up_8|NC_012032.1_1637161_1638982_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|416aa|up_7|NC_012032.1_1639002_1640250_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|315aa|up_6|NC_012032.1_1640498_1641443_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|743aa|up_5|NC_012032.1_1641439_1643668_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|367aa|up_4|NC_012032.1_1643669_1644770_+	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated	NA|502aa|up_3|NC_012032.1_1644787_1646293_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|48aa|up_2|NC_012032.1_1646694_1646838_-	NA	NA|407aa|up_1|NC_012032.1_1647941_1649162_-	NA	NA|414aa|up_0|NC_012032.1_1649429_1650671_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|211aa|down_0|NC_012032.1_1651526_1652159_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|365aa|down_1|NC_012032.1_1652394_1653489_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|354aa|down_2|NC_012032.1_1653582_1654644_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|633aa|down_3|NC_012032.1_1654788_1656687_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|453aa|down_4|NC_012032.1_1656813_1658172_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|184aa|down_5|NC_012032.1_1658336_1658888_+	pfam02674, Colicin_V, Colicin V production protein	NA|820aa|down_6|NC_012032.1_1658966_1661426_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|174aa|down_7|NC_012032.1_1663269_1663791_+	PRK07571, PRK07571, bidirectional hydrogenase complex protein HoxE; Reviewed	NA|536aa|down_8|NC_012032.1_1663794_1665402_+	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|236aa|down_9|NC_012032.1_1665391_1666099_+	PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU; Validated
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	12	1720764-1720879	11	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	AGTTGCTACCAGATCACGGCAGTAACCATACGCTATCGAGC	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|49aa|up_8|NC_012032.1_1711994_1712141_+,NA|72aa|up_4|NC_012032.1_1714937_1715153_-,NA|90aa|up_0|NC_012032.1_1720397_1720667_+,NA|48aa|down_0|NC_012032.1_1721361_1721505_+	NA|435aa|up_9|NC_012032.1_1710416_1711721_-	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|49aa|up_8|NC_012032.1_1711994_1712141_+	NA	NA|427aa|up_7|NC_012032.1_1712264_1713545_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|328aa|up_6|NC_012032.1_1713525_1714509_-	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|139aa|up_5|NC_012032.1_1714505_1714922_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|72aa|up_4|NC_012032.1_1714937_1715153_-	NA	NA|492aa|up_3|NC_012032.1_1715193_1716669_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|158aa|up_2|NC_012032.1_1716867_1717341_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|784aa|up_1|NC_012032.1_1718019_1720371_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|90aa|up_0|NC_012032.1_1720397_1720667_+	NA	NA|48aa|down_0|NC_012032.1_1721361_1721505_+	NA	NA|395aa|down_1|NC_012032.1_1721604_1722789_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|652aa|down_2|NC_012032.1_1723148_1725104_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|497aa|down_3|NC_012032.1_1725269_1726760_-	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|704aa|down_4|NC_012032.1_1726900_1729012_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|327aa|down_5|NC_012032.1_1729030_1730011_+	pfam03320, FBPase_glpX, Bacterial fructose-1,6-bisphosphatase, glpX-encoded	NA|417aa|down_6|NC_012032.1_1730820_1732071_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|173aa|down_7|NC_012032.1_1732467_1732986_+	cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)	NA|236aa|down_8|NC_012032.1_1732982_1733690_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|459aa|down_9|NC_012032.1_1733713_1735090_+	pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24), sialomucin
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	13	1745435-1745531	12	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GTAGTGGGGATGCCTGCACGCGGGCTGGAAG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|53aa|up_3|NC_012032.1_1738180_1738339_-,NA|88aa|down_3|NC_012032.1_1748559_1748823_-	NA|417aa|up_9|NC_012032.1_1730820_1732071_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|173aa|up_8|NC_012032.1_1732467_1732986_+	cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)	NA|236aa|up_7|NC_012032.1_1732982_1733690_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|459aa|up_6|NC_012032.1_1733713_1735090_+	pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24), sialomucin	NA|538aa|up_5|NC_012032.1_1735305_1736919_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|269aa|up_4|NC_012032.1_1737282_1738089_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|53aa|up_3|NC_012032.1_1738180_1738339_-	NA	NA|823aa|up_2|NC_012032.1_1738783_1741252_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|330aa|up_1|NC_012032.1_1741453_1742443_+	pfam01555, N6_N4_Mtase, DNA methylase	NA|694aa|up_0|NC_012032.1_1743110_1745192_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|426aa|down_0|NC_012032.1_1745761_1747039_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|186aa|down_1|NC_012032.1_1747016_1747574_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|325aa|down_2|NC_012032.1_1747595_1748570_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|88aa|down_3|NC_012032.1_1748559_1748823_-	NA	NA|331aa|down_4|NC_012032.1_1749156_1750149_-	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen	NA|327aa|down_5|NC_012032.1_1750167_1751148_-	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	NA|401aa|down_6|NC_012032.1_1751423_1752626_+	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|399aa|down_7|NC_012032.1_1752660_1753857_+	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|223aa|down_8|NC_012032.1_1753863_1754532_+	pfam02190, LON_substr_bdg, ATP-dependent protease La (LON) substrate-binding domain	NA|95aa|down_9|NC_012032.1_1754547_1754832_+	pfam04456, DUF503, Protein of unknown function (DUF503)
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	14	2483345-2483453	13	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GCGGGTTCCCACCCCGCCCCCCGTGGCGT	29	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|281aa|up_2|NC_012032.1_2480588_2481431_-,NA|357aa|down_5|NC_012032.1_2490883_2491954_+,NA|301aa|down_6|NC_012032.1_2492131_2493034_+	NA|391aa|up_9|NC_012032.1_2470278_2471451_+	TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA|325aa|up_8|NC_012032.1_2471464_2472439_-	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|351aa|up_7|NC_012032.1_2472444_2473497_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|411aa|up_6|NC_012032.1_2473976_2475209_-	TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily	NA|425aa|up_5|NC_012032.1_2475508_2476783_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|574aa|up_4|NC_012032.1_2476804_2478526_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|359aa|up_3|NC_012032.1_2478595_2479672_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|281aa|up_2|NC_012032.1_2480588_2481431_-	NA	NA|164aa|up_1|NC_012032.1_2481597_2482089_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|348aa|up_0|NC_012032.1_2482102_2483146_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|720aa|down_0|NC_012032.1_2483508_2485668_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|529aa|down_1|NC_012032.1_2486071_2487658_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|381aa|down_2|NC_012032.1_2487654_2488797_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|166aa|down_3|NC_012032.1_2488796_2489294_+	pfam14367, DUF4411, Domain of unknown function (DUF4411)	NA|439aa|down_4|NC_012032.1_2489570_2490887_+	cd17260, RMtype1_S_EcoEI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|357aa|down_5|NC_012032.1_2490883_2491954_+	NA	NA|301aa|down_6|NC_012032.1_2492131_2493034_+	NA	NA|1045aa|down_7|NC_012032.1_2493119_2496254_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|216aa|down_8|NC_012032.1_2496612_2497260_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|306aa|down_9|NC_012032.1_2497600_2498518_+	cd06260, DUF820, Domain of unknown function (DUF820)
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	15	2707032-2707149	14	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CCTACGATCCGTCCTTCTTTTCTCAGCACAAGACGTGATCCA	42	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA	NA|352aa|up_9|NC_012032.1_2694826_2695882_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|300aa|up_8|NC_012032.1_2695979_2696879_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|356aa|up_7|NC_012032.1_2697003_2698071_+	TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form	NA|292aa|up_6|NC_012032.1_2698079_2698955_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|326aa|up_5|NC_012032.1_2698958_2699936_-	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs	NA|156aa|up_4|NC_012032.1_2700917_2701385_+	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|358aa|up_3|NC_012032.1_2701952_2703026_+	TIGR03182, Pyruvate_dehydrogenase_E1_component_subunit_alpha, pyruvate dehydrogenase E1 component, alpha subunit	NA|332aa|up_2|NC_012032.1_2703118_2704114_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|451aa|up_1|NC_012032.1_2704143_2705496_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|299aa|up_0|NC_012032.1_2705704_2706601_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|529aa|down_0|NC_012032.1_2707393_2708980_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|504aa|down_1|NC_012032.1_2709003_2710515_-	COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]	NA|555aa|down_2|NC_012032.1_2710559_2712224_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|733aa|down_3|NC_012032.1_2712227_2714426_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed	NA|106aa|down_4|NC_012032.1_2714559_2714877_-	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|217aa|down_5|NC_012032.1_2714879_2715530_-	PRK06638, PRK06638, NADH-quinone oxidoreductase subunit J	NA|441aa|down_6|NC_012032.1_2715582_2716905_-	pfam00146, NADHdh, NADH dehydrogenase	NA|359aa|down_7|NC_012032.1_2716922_2717999_-	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI	NA|370aa|down_8|NC_012032.1_2717995_2719105_-	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|174aa|down_9|NC_012032.1_2719180_2719702_-	pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	16	2858595-2858720	15	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TTCACCACCGAGGCACAGAGGACACAAAGACTC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|58aa|up_3|NC_012032.1_2853716_2853890_-,NA|50aa|down_7|NC_012032.1_2868502_2868652_-	NA|468aa|up_9|NC_012032.1_2843795_2845199_+	COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]	NA|845aa|up_8|NC_012032.1_2845293_2847828_+	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|464aa|up_7|NC_012032.1_2847882_2849274_+	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|420aa|up_6|NC_012032.1_2849937_2851197_-	TIGR02023, geranylgeranyl_bacteriochlorophyll_reductase, geranylgeranyl reductase	NA|311aa|up_5|NC_012032.1_2851226_2852159_-	TIGR01476, Bacteriochlorophyll_synthase_33_kDa_chain, bacteriochlorophyll/chlorophyll synthetase	NA|415aa|up_4|NC_012032.1_2852223_2853468_-	cd09224, CytoC_RC, Cytochrome C subunit of the bacterial photosynthetic reaction center	NA|58aa|up_3|NC_012032.1_2853716_2853890_-	NA	NA|54aa|up_2|NC_012032.1_2853917_2854079_-	pfam00556, LHC, Antenna complex alpha/beta subunit	NA|583aa|up_1|NC_012032.1_2854913_2856662_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|595aa|up_0|NC_012032.1_2856802_2858587_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|397aa|down_0|NC_012032.1_2858762_2859953_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|877aa|down_1|NC_012032.1_2859949_2862580_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|952aa|down_2|NC_012032.1_2863337_2866193_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|269aa|down_3|NC_012032.1_2866630_2867437_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|102aa|down_4|NC_012032.1_2867664_2867970_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|72aa|down_5|NC_012032.1_2867983_2868199_-	COG2361, COG2361, Uncharacterized conserved protein [Function unknown]	NA|105aa|down_6|NC_012032.1_2868185_2868500_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|50aa|down_7|NC_012032.1_2868502_2868652_-	NA	NA|373aa|down_8|NC_012032.1_2868786_2869905_-	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis	NA|410aa|down_9|NC_012032.1_2870046_2871276_-	cd00887, MoeA, MoeA family
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	17	2969514-2969639	16	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ACCACTGTGGTGATAGAAGAGATACATCCGCGTTCATCCGCC	42	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|376aa|up_9|NC_012032.1_2954017_2955145_+,NA|711aa|up_3|NC_012032.1_2961342_2963475_+,NA|589aa|up_1|NC_012032.1_2967354_2969121_-,NA|94aa|up_0|NC_012032.1_2969107_2969389_+,NA|129aa|down_0|NC_012032.1_2970157_2970544_-,NA|114aa|down_3|NC_012032.1_2972651_2972993_-	NA|376aa|up_9|NC_012032.1_2954017_2955145_+	NA	NA|162aa|up_8|NC_012032.1_2955141_2955627_+	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown]	NA|107aa|up_7|NC_012032.1_2955626_2955947_+	pfam14107, DUF4280, Domain of unknown function (DUF4280)	NA|117aa|up_6|NC_012032.1_2955946_2956297_+	pfam04965, GPW_gp25, Gene 25-like lysozyme	NA|837aa|up_5|NC_012032.1_2956299_2958810_+	TIGR02243, hypothetical_protein_SCD8A	NA|840aa|up_4|NC_012032.1_2958806_2961326_+	TIGR02243, hypothetical_protein_SCD8A	NA|711aa|up_3|NC_012032.1_2961342_2963475_+	NA	NA|1036aa|up_2|NC_012032.1_2963524_2966632_+	pfam16075, DUF4815, Domain of unknown function (DUF4815)	NA|589aa|up_1|NC_012032.1_2967354_2969121_-	NA	NA|94aa|up_0|NC_012032.1_2969107_2969389_+	NA	NA|129aa|down_0|NC_012032.1_2970157_2970544_-	NA	NA|469aa|down_1|NC_012032.1_2970614_2972021_-	PRK00973, PRK00973, glucose-6-phosphate isomerase; Provisional	NA|114aa|down_2|NC_012032.1_2972315_2972657_+	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|114aa|down_3|NC_012032.1_2972651_2972993_-	NA	NA|402aa|down_4|NC_012032.1_2973553_2974759_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|76aa|down_5|NC_012032.1_2974831_2975059_+	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|188aa|down_6|NC_012032.1_2975082_2975646_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|142aa|down_7|NC_012032.1_2975723_2976149_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|238aa|down_8|NC_012032.1_2976207_2976921_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|183aa|down_9|NC_012032.1_2977131_2977680_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	18	3251960-3252102	17	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	TAATACGGCAACCTTTGACATACCAGGACGGCGTGTCTGGTAAAGA	46	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|383aa|up_8|NC_012032.1_3242184_3243333_+,NA|70aa|up_4|NC_012032.1_3246538_3246748_+,NA|54aa|up_1|NC_012032.1_3249636_3249798_+,NA	NA|492aa|up_9|NC_012032.1_3240692_3242168_+	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain	NA|383aa|up_8|NC_012032.1_3242184_3243333_+	NA	NA|324aa|up_7|NC_012032.1_3243304_3244276_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|95aa|up_6|NC_012032.1_3244393_3244678_-	pfam01649, Ribosomal_S20p, Ribosomal protein S20	NA|522aa|up_5|NC_012032.1_3244779_3246345_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|70aa|up_4|NC_012032.1_3246538_3246748_+	NA	NA|495aa|up_3|NC_012032.1_3246936_3248421_-	TIGR02734, Phytoene_desaturase_lycopene-forming, phytoene desaturase	NA|221aa|up_2|NC_012032.1_3248957_3249620_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|54aa|up_1|NC_012032.1_3249636_3249798_+	NA	NA|163aa|up_0|NC_012032.1_3249794_3250283_+	cd13913, ba3_CcO_II_C, C-terminal cupredoxin domain of Ba3-like heme-copper oxidase subunit II	NA|272aa|down_0|NC_012032.1_3252285_3253101_+	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional	NA|355aa|down_1|NC_012032.1_3253081_3254146_+	cd01149, HutB, Hemin binding protein HutB	NA|355aa|down_2|NC_012032.1_3254142_3255207_+	pfam01032, FecCD, FecCD transport family	NA|121aa|down_3|NC_012032.1_3255223_3255586_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|232aa|down_4|NC_012032.1_3255795_3256491_+	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|378aa|down_5|NC_012032.1_3257369_3258503_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|380aa|down_6|NC_012032.1_3258869_3260009_-	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|232aa|down_7|NC_012032.1_3260005_3260701_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|183aa|down_8|NC_012032.1_3261073_3261622_-	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|484aa|down_9|NC_012032.1_3261976_3263428_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	19	3373039-3373154	18	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GATCTACAGAGATGTGAAAGCTATCTGAAGGGGTTGCAAG	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|86aa|down_0|NC_012032.1_3373472_3373730_-	NA|290aa|up_9|NC_012032.1_3363235_3364105_+	pfam12183, NotI, Restriction endonuclease NotI	NA|301aa|up_8|NC_012032.1_3364124_3365027_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|291aa|up_7|NC_012032.1_3365149_3366022_+	pfam00582, Usp, Universal stress protein family	NA|164aa|up_6|NC_012032.1_3366026_3366518_-	pfam03473, MOSC, MOSC domain	NA|376aa|up_5|NC_012032.1_3366648_3367776_+	TIGR01013, Sodium-dependent_phosphate_transport_protein, Phosphate:Na+ Symporter (PNaS) Family	NA|274aa|up_4|NC_012032.1_3367783_3368605_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|465aa|up_3|NC_012032.1_3368696_3370091_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|378aa|up_2|NC_012032.1_3370228_3371362_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|307aa|up_1|NC_012032.1_3371358_3372279_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|128aa|up_0|NC_012032.1_3372488_3372872_-	TIGR04086, hypothetical_protein, putative membrane protein, TIGR04086 family	NA|86aa|down_0|NC_012032.1_3373472_3373730_-	NA	NA|525aa|down_1|NC_012032.1_3374212_3375787_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|341aa|down_2|NC_012032.1_3376034_3377057_-	pfam09084, NMT1, NMT1/THI5 like	NA|263aa|down_3|NC_012032.1_3377094_3377883_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|653aa|down_4|NC_012032.1_3378132_3380091_+	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|93aa|down_5|NC_012032.1_3380148_3380427_-	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|111aa|down_6|NC_012032.1_3380468_3380801_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|244aa|down_7|NC_012032.1_3381027_3381759_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|420aa|down_8|NC_012032.1_3381891_3383151_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|469aa|down_9|NC_012032.1_3383556_3384963_-	pfam13485, Peptidase_MA_2, Peptidase MA superfamily
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	20	3769759-3769874	19	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGGTTAAGCAGGATCGTCTTCGGGTGACCTATGGACGTAGT	41	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA|203aa|down_5|NC_012032.1_3778529_3779138_-	NA|477aa|up_9|NC_012032.1_3756155_3757586_+	COG3552, CoxE, Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|199aa|up_8|NC_012032.1_3757824_3758421_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|646aa|up_7|NC_012032.1_3758705_3760643_+	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase	NA|126aa|up_6|NC_012032.1_3760611_3760989_+	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|958aa|up_5|NC_012032.1_3761024_3763898_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|528aa|up_4|NC_012032.1_3763890_3765474_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|198aa|up_3|NC_012032.1_3765476_3766070_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|362aa|up_2|NC_012032.1_3766044_3767130_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|453aa|up_1|NC_012032.1_3767139_3768498_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|401aa|up_0|NC_012032.1_3768552_3769755_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|449aa|down_0|NC_012032.1_3769916_3771263_-	cd14488, CBM6-CBM35-CBM36_like_2, uncharacterized members of the carbohydrate binding module 6 (CBM6) and CBM35_like superfamily	NA|387aa|down_1|NC_012032.1_3771517_3772678_-	pfam11258, DUF3048, Protein of unknown function (DUF3048) N-terminal domain	NA|1175aa|down_2|NC_012032.1_3773340_3776865_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|280aa|down_3|NC_012032.1_3776865_3777705_-	pfam02810, SEC-C, SEC-C motif	NA|270aa|down_4|NC_012032.1_3777723_3778533_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|203aa|down_5|NC_012032.1_3778529_3779138_-	NA	NA|1114aa|down_6|NC_012032.1_3779134_3782476_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|151aa|down_7|NC_012032.1_3783295_3783748_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|447aa|down_8|NC_012032.1_3783896_3785237_-	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|124aa|down_9|NC_012032.1_3785279_3785651_-	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	21	3943582-3943701	20	CRISPRCasFinder	no	WYL,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Unclear	GCTGAATGTGCTCATACCAATCATCGAGTCGGTCCGGCATGC	42	0	0	NA	NA	NA	1	1	Unclear	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|222aa|up_7|NC_012032.1_3935638_3936304_+,NA|126aa|up_2|NC_012032.1_3940266_3940644_-,NA|83aa|down_1|NC_012032.1_3944885_3945134_+,NA|120aa|down_2|NC_012032.1_3945858_3946218_-	NA|295aa|up_9|NC_012032.1_3934172_3935057_-	pfam03881, Fructosamin_kin, Fructosamine kinase	NA|88aa|up_8|NC_012032.1_3935176_3935440_-	pfam04024, PspC, PspC domain	NA|222aa|up_7|NC_012032.1_3935638_3936304_+	NA	NA|255aa|up_6|NC_012032.1_3936604_3937369_-	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|172aa|up_5|NC_012032.1_3937387_3937903_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|402aa|up_4|NC_012032.1_3938075_3939281_+	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|303aa|up_3|NC_012032.1_3939277_3940186_+	cd09989, Arginase, Arginase family	NA|126aa|up_2|NC_012032.1_3940266_3940644_-	NA	NA|377aa|up_1|NC_012032.1_3940752_3941883_+	PRK14461, PRK14461, ribosomal RNA large subunit methyltransferase N; Provisional	NA|439aa|up_0|NC_012032.1_3941928_3943245_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|70aa|down_0|NC_012032.1_3944242_3944452_+	pfam01978, TrmB, Sugar-specific transcriptional regulator TrmB	NA|83aa|down_1|NC_012032.1_3944885_3945134_+	NA	NA|120aa|down_2|NC_012032.1_3945858_3946218_-	NA	NA|70aa|down_3|NC_012032.1_3946762_3946972_+	pfam01978, TrmB, Sugar-specific transcriptional regulator TrmB	NA|337aa|down_4|NC_012032.1_3947084_3948095_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	WYL|321aa|down_5|NC_012032.1_3948156_3949119_+	pfam13280, WYL, WYL domain	cas8b2|501aa|down_6|NC_012032.1_3949190_3950693_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|down_7|NC_012032.1_3950719_3951811_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|down_8|NC_012032.1_3951819_3952557_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|785aa|down_9|NC_012032.1_3952534_3954889_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	22	3946101-3946220	21	CRISPRCasFinder	no	WYL,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Unclear	GCTGAATGTGCTCATACCAATCATCGAGTCGGTCCGGCATGC	42	0	0	NA	NA	NA	1	1	Unclear	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|126aa|up_5|NC_012032.1_3940266_3940644_-,NA|120aa|up_2|NC_012032.1_3943339_3943699_-,NA|83aa|up_0|NC_012032.1_3944885_3945134_+,NA	NA|255aa|up_9|NC_012032.1_3936604_3937369_-	cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E	NA|172aa|up_8|NC_012032.1_3937387_3937903_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|402aa|up_7|NC_012032.1_3938075_3939281_+	cd02035, ArsA, Arsenical pump-driving ATPase ArsA	NA|303aa|up_6|NC_012032.1_3939277_3940186_+	cd09989, Arginase, Arginase family	NA|126aa|up_5|NC_012032.1_3940266_3940644_-	NA	NA|377aa|up_4|NC_012032.1_3940752_3941883_+	PRK14461, PRK14461, ribosomal RNA large subunit methyltransferase N; Provisional	NA|439aa|up_3|NC_012032.1_3941928_3943245_+	TIGR00442, hisS, histidyl-tRNA synthetase	NA|120aa|up_2|NC_012032.1_3943339_3943699_-	NA	NA|70aa|up_1|NC_012032.1_3944242_3944452_+	pfam01978, TrmB, Sugar-specific transcriptional regulator TrmB	NA|83aa|up_0|NC_012032.1_3944885_3945134_+	NA	NA|70aa|down_0|NC_012032.1_3946762_3946972_+	pfam01978, TrmB, Sugar-specific transcriptional regulator TrmB	NA|337aa|down_1|NC_012032.1_3947084_3948095_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	WYL|321aa|down_2|NC_012032.1_3948156_3949119_+	pfam13280, WYL, WYL domain	cas8b2|501aa|down_3|NC_012032.1_3949190_3950693_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|down_4|NC_012032.1_3950719_3951811_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|down_5|NC_012032.1_3951819_3952557_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|785aa|down_6|NC_012032.1_3952534_3954889_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas6|334aa|down_7|NC_012032.1_3954891_3955893_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|338aa|down_8|NC_012032.1_3956217_3957231_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|86aa|down_9|NC_012032.1_3957242_3957500_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	23	3958399-3986066	5,22,2,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Unclear	CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC,CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC,NCTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAACN,CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC	37,37,39,37	0	0	NA	NA	NA:NA:NA:NA	370,374,375,370	375	Unclear	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA	NA|337aa|up_9|NC_012032.1_3947084_3948095_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	WYL|321aa|up_8|NC_012032.1_3948156_3949119_+	pfam13280, WYL, WYL domain	cas8b2|501aa|up_7|NC_012032.1_3949190_3950693_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|364aa|up_6|NC_012032.1_3950719_3951811_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|246aa|up_5|NC_012032.1_3951819_3952557_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|785aa|up_4|NC_012032.1_3952534_3954889_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas6|334aa|up_3|NC_012032.1_3954891_3955893_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|338aa|up_2|NC_012032.1_3956217_3957231_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|86aa|up_1|NC_012032.1_3957242_3957500_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|203aa|up_0|NC_012032.1_3957486_3958095_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|967aa|down_0|NC_012032.1_3986235_3989136_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|312aa|down_1|NC_012032.1_3989154_3990090_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|253aa|down_2|NC_012032.1_3990122_3990881_-	TIGR01963, D-beta-hydroxybutyrate_dehydrogenase, 3-hydroxybutyrate dehydrogenase	NA|218aa|down_3|NC_012032.1_3990919_3991573_-	PRK00279, adk, adenylate kinase; Reviewed	NA|885aa|down_4|NC_012032.1_3991585_3994240_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|277aa|down_5|NC_012032.1_3994297_3995128_-	pfam00932, LTD, Lamin Tail Domain	NA|831aa|down_6|NC_012032.1_3995173_3997666_-	cd05805, MPG1_transferase, GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity	NA|555aa|down_7|NC_012032.1_3997902_3999567_-	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|499aa|down_8|NC_012032.1_3999573_4001070_-	cd05941, MCS, Malonyl-CoA synthetase (MCS)	NA|877aa|down_9|NC_012032.1_4001292_4003923_-	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	24	4048662-4048788	23	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GGGAGCGCGCCTCCGGTGCGCATTACCAGCGGTGTATCGC	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|433aa|up_6|NC_012032.1_4037722_4039021_+,NA|627aa|up_2|NC_012032.1_4043183_4045064_+,NA|329aa|up_0|NC_012032.1_4045959_4046946_-,NA|285aa|down_7|NC_012032.1_4059556_4060411_-	NA|169aa|up_9|NC_012032.1_4035326_4035833_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|331aa|up_8|NC_012032.1_4035829_4036822_-	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|250aa|up_7|NC_012032.1_4036960_4037710_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|433aa|up_6|NC_012032.1_4037722_4039021_+	NA	NA|160aa|up_5|NC_012032.1_4040083_4040563_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|233aa|up_4|NC_012032.1_4040746_4041445_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|275aa|up_3|NC_012032.1_4041466_4042291_+	pfam01972, SDH_sah, Serine dehydrogenase proteinase	NA|627aa|up_2|NC_012032.1_4043183_4045064_+	NA	NA|236aa|up_1|NC_012032.1_4045104_4045812_-	cd07438, PHP_HisPPase_AMP, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase (HisPPase) AMP bound	NA|329aa|up_0|NC_012032.1_4045959_4046946_-	NA	NA|187aa|down_0|NC_012032.1_4048929_4049490_+	PRK06474, PRK06474, hypothetical protein; Provisional	NA|257aa|down_1|NC_012032.1_4049800_4050571_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|456aa|down_2|NC_012032.1_4050651_4052019_+	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase	NA|192aa|down_3|NC_012032.1_4052199_4052775_+	pfam12867, DinB_2, DinB superfamily	NA|761aa|down_4|NC_012032.1_4053090_4055373_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|579aa|down_5|NC_012032.1_4055569_4057306_-	pfam11832, DUF3352, Protein of unknown function (DUF3352)	NA|637aa|down_6|NC_012032.1_4057608_4059519_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|285aa|down_7|NC_012032.1_4059556_4060411_-	NA	NA|443aa|down_8|NC_012032.1_4062835_4064164_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|109aa|down_9|NC_012032.1_4064168_4064495_+	pfam04296, DUF448, Protein of unknown function (DUF448)
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	25	4215998-4216123	24	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GCGGATGAACATTCTTTTGCGAGCCGGAGGCCCGCGCTCCCAGCG	45	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|194aa|up_3|NC_012032.1_4212827_4213409_-,NA|89aa|up_2|NC_012032.1_4213555_4213822_-,NA|72aa|up_1|NC_012032.1_4214453_4214669_-,NA|121aa|up_0|NC_012032.1_4215503_4215866_+,NA|57aa|down_2|NC_012032.1_4219831_4220002_-,NA|81aa|down_9|NC_012032.1_4227077_4227320_+	NA|862aa|up_9|NC_012032.1_4203557_4206143_-	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|211aa|up_8|NC_012032.1_4206287_4206920_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|475aa|up_7|NC_012032.1_4207232_4208657_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|305aa|up_6|NC_012032.1_4209006_4209921_+	cd01144, BtuF, Cobalamin binding protein BtuF	NA|628aa|up_5|NC_012032.1_4209967_4211851_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|269aa|up_4|NC_012032.1_4211921_4212728_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|194aa|up_3|NC_012032.1_4212827_4213409_-	NA	NA|89aa|up_2|NC_012032.1_4213555_4213822_-	NA	NA|72aa|up_1|NC_012032.1_4214453_4214669_-	NA	NA|121aa|up_0|NC_012032.1_4215503_4215866_+	NA	NA|505aa|down_0|NC_012032.1_4216287_4217802_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|337aa|down_1|NC_012032.1_4218679_4219690_-	cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1	NA|57aa|down_2|NC_012032.1_4219831_4220002_-	NA	NA|163aa|down_3|NC_012032.1_4220251_4220740_-	pfam08592, DUF1772, Domain of unknown function (DUF1772)	NA|160aa|down_4|NC_012032.1_4220764_4221244_-	pfam10027, DUF2269, Predicted integral membrane protein (DUF2269)	NA|330aa|down_5|NC_012032.1_4221346_4222336_+	pfam12852, Cupin_6, Cupin	NA|127aa|down_6|NC_012032.1_4224786_4225167_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|261aa|down_7|NC_012032.1_4225370_4226153_-	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|261aa|down_8|NC_012032.1_4226149_4226932_-	pfam02517, Abi, CAAX protease self-immunity	NA|81aa|down_9|NC_012032.1_4227077_4227320_+	NA
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	26	4543861-4550058	7,25,3	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas6,csx1,RT,cas1,cas2	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Unclear	CAGCAGAGCATTGCCCCGCAATGAAGGGGTTTGAAAC,CAGCAGAGCATTGCCCCGCAATGAAGGGGTTTGAAAC,CAGCAGAGCATNTGCCCCGCAATGAAGGGGTTTGAAAC	37,37,38	0	0	NA	NA	NA:NA:NA	77,83,83	83	Unclear	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA,NA	NA|1224aa|up_9|NC_012032.1_4529580_4533252_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	cas6|329aa|up_8|NC_012032.1_4533459_4534446_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csx1|452aa|up_7|NC_012032.1_4534457_4535813_+	cd09702, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	WYL|339aa|up_6|NC_012032.1_4535846_4536863_+	pfam13280, WYL, WYL domain	csx1|242aa|up_5|NC_012032.1_4536859_4537585_+	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|211aa|up_4|NC_012032.1_4538126_4538759_+	cd09279, RNase_HI_like, RNAse HI family that includes archaeal, some bacterial as well as plant RNase HI	RT|435aa|up_3|NC_012032.1_4538985_4540290_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas1|332aa|up_2|NC_012032.1_4540321_4541317_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|94aa|up_1|NC_012032.1_4541313_4541595_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	WYL|701aa|up_0|NC_012032.1_4541595_4543698_-	pfam13280, WYL, WYL domain	NA|422aa|down_0|NC_012032.1_4550313_4551579_+	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|409aa|down_1|NC_012032.1_4551863_4553090_-	smart00271, DnaJ, DnaJ molecular chaperone homology domain	NA|139aa|down_2|NC_012032.1_4553173_4553590_+	pfam01878, EVE, EVE domain	NA|235aa|down_3|NC_012032.1_4553797_4554502_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|396aa|down_4|NC_012032.1_4554498_4555686_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|729aa|down_5|NC_012032.1_4555682_4557869_+	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily	NA|664aa|down_6|NC_012032.1_4558550_4560542_+	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|445aa|down_7|NC_012032.1_4561120_4562455_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|216aa|down_8|NC_012032.1_4562511_4563159_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|600aa|down_9|NC_012032.1_4563933_4565733_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	27	4643015-4643130	26	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ACGTGTGAGCTGGAGGCTCGCGCTCCCAGGG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|59aa|up_1|NC_012032.1_4641902_4642079_+,NA|53aa|down_2|NC_012032.1_4645495_4645654_-,NA|336aa|down_9|NC_012032.1_4654853_4655861_+	NA|369aa|up_9|NC_012032.1_4633511_4634618_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|245aa|up_8|NC_012032.1_4634729_4635464_-	pfam09549, RE_Bpu10I, Bpu10I restriction endonuclease	NA|414aa|up_7|NC_012032.1_4635636_4636878_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|334aa|up_6|NC_012032.1_4636923_4637925_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|137aa|up_5|NC_012032.1_4638299_4638710_-	pfam09996, DUF2237, Uncharacterized protein conserved in bacteria (DUF2237)	NA|404aa|up_4|NC_012032.1_4639216_4640428_-	pfam13424, TPR_12, Tetratricopeptide repeat	NA|102aa|up_3|NC_012032.1_4640451_4640757_-	pfam01637, ATPase_2, ATPase domain predominantly from Archaea	NA|275aa|up_2|NC_012032.1_4640753_4641578_-	pfam12770, CHAT, CHAT domain	NA|59aa|up_1|NC_012032.1_4641902_4642079_+	NA	NA|130aa|up_0|NC_012032.1_4642156_4642546_-	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	NA|314aa|down_0|NC_012032.1_4643280_4644222_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|350aa|down_1|NC_012032.1_4644218_4645268_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|53aa|down_2|NC_012032.1_4645495_4645654_-	NA	NA|652aa|down_3|NC_012032.1_4645993_4647949_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|318aa|down_4|NC_012032.1_4648015_4648969_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|179aa|down_5|NC_012032.1_4649712_4650249_-	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|325aa|down_6|NC_012032.1_4650508_4651483_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|601aa|down_7|NC_012032.1_4651961_4653764_+	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	NA|196aa|down_8|NC_012032.1_4653913_4654501_-	pfam04173, DoxD, TQO small subunit DoxD	NA|336aa|down_9|NC_012032.1_4654853_4655861_+	NA
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	28	4853957-4854061	27	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GTCTTCGGTGATTGGCAAGCGTTC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|281aa|up_8|NC_012032.1_4843184_4844027_-,NA|406aa|up_0|NC_012032.1_4852425_4853643_+,NA|78aa|down_3|NC_012032.1_4859832_4860066_+,NA|216aa|down_5|NC_012032.1_4861256_4861904_-,NA|233aa|down_8|NC_012032.1_4863374_4864073_-	NA|379aa|up_9|NC_012032.1_4841531_4842668_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|281aa|up_8|NC_012032.1_4843184_4844027_-	NA	NA|300aa|up_7|NC_012032.1_4844184_4845084_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|306aa|up_6|NC_012032.1_4845471_4846389_+	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|651aa|up_5|NC_012032.1_4846401_4848354_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|201aa|up_4|NC_012032.1_4848623_4849226_-	PRK13294, PRK13294, F420-0--gamma-glutamyl ligase; Provisional	NA|252aa|up_3|NC_012032.1_4849230_4849986_-	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|289aa|up_2|NC_012032.1_4849992_4850859_-	PRK07432, PRK07432, S-methyl-5'-thioadenosine phosphorylase	NA|227aa|up_1|NC_012032.1_4851429_4852110_+	pfam02517, Abi, CAAX protease self-immunity	NA|406aa|up_0|NC_012032.1_4852425_4853643_+	NA	NA|1093aa|down_0|NC_012032.1_4854462_4857741_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|265aa|down_1|NC_012032.1_4857764_4858559_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|265aa|down_2|NC_012032.1_4858703_4859498_-	pfam13267, DUF4058, Protein of unknown function (DUF4058)	NA|78aa|down_3|NC_012032.1_4859832_4860066_+	NA	NA|259aa|down_4|NC_012032.1_4860159_4860936_-	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|216aa|down_5|NC_012032.1_4861256_4861904_-	NA	NA|124aa|down_6|NC_012032.1_4862565_4862937_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|145aa|down_7|NC_012032.1_4862936_4863371_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|233aa|down_8|NC_012032.1_4863374_4864073_-	NA	NA|515aa|down_9|NC_012032.1_4864435_4865980_+	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	29	4975356-4975457	28	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	ATCACCGCACGGCACCAGCGCGGTC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|228aa|up_5|NC_012032.1_4962917_4963601_+,NA|50aa|up_2|NC_012032.1_4968105_4968255_-,NA|1222aa|up_1|NC_012032.1_4969690_4973356_+,NA|216aa|down_1|NC_012032.1_4977611_4978259_+,NA|653aa|down_6|NC_012032.1_4982938_4984897_-	NA|439aa|up_9|NC_012032.1_4956935_4958252_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|571aa|up_8|NC_012032.1_4958336_4960049_-	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]	NA|269aa|up_7|NC_012032.1_4960191_4960998_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|452aa|up_6|NC_012032.1_4961004_4962360_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|228aa|up_5|NC_012032.1_4962917_4963601_+	NA	NA|449aa|up_4|NC_012032.1_4963632_4964979_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|941aa|up_3|NC_012032.1_4965016_4967839_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|50aa|up_2|NC_012032.1_4968105_4968255_-	NA	NA|1222aa|up_1|NC_012032.1_4969690_4973356_+	NA	NA|342aa|up_0|NC_012032.1_4973709_4974735_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|205aa|down_0|NC_012032.1_4976275_4976890_+	pfam02674, Colicin_V, Colicin V production protein	NA|216aa|down_1|NC_012032.1_4977611_4978259_+	NA	NA|406aa|down_2|NC_012032.1_4978719_4979937_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|544aa|down_3|NC_012032.1_4980052_4981684_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|262aa|down_4|NC_012032.1_4981680_4982466_-	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|127aa|down_5|NC_012032.1_4982541_4982922_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|653aa|down_6|NC_012032.1_4982938_4984897_-	NA	NA|66aa|down_7|NC_012032.1_4984914_4985112_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|398aa|down_8|NC_012032.1_4985104_4986298_-	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|181aa|down_9|NC_012032.1_4986297_4986840_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	30	5079754-5079859	29	CRISPRCasFinder	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	CACCGAAACCGATAGCAGACTCTCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|141aa|up_5|NC_012032.1_5069889_5070312_-,NA|993aa|down_9|NC_012032.1_5092879_5095858_-	NA|448aa|up_9|NC_012032.1_5063975_5065319_+	PRK07233, PRK07233, hypothetical protein; Provisional	NA|491aa|up_8|NC_012032.1_5065326_5066799_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|345aa|up_7|NC_012032.1_5066830_5067865_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|522aa|up_6|NC_012032.1_5068255_5069821_-	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|141aa|up_5|NC_012032.1_5069889_5070312_-	NA	NA|545aa|up_4|NC_012032.1_5070324_5071959_-	TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase	NA|1210aa|up_3|NC_012032.1_5072381_5076011_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|133aa|up_2|NC_012032.1_5076027_5076426_+	cd17552, REC_RR468-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator RR468 and similar domains	NA|723aa|up_1|NC_012032.1_5076406_5078575_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|391aa|up_0|NC_012032.1_5078575_5079748_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|292aa|down_0|NC_012032.1_5079976_5080852_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|245aa|down_1|NC_012032.1_5080929_5081664_+	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain	NA|444aa|down_2|NC_012032.1_5081665_5082997_+	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]	NA|310aa|down_3|NC_012032.1_5083070_5084000_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|384aa|down_4|NC_012032.1_5084024_5085176_+	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair]	NA|439aa|down_5|NC_012032.1_5085997_5087314_+	cd01980, Chlide_reductase_Y, Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY)	NA|494aa|down_6|NC_012032.1_5087310_5088792_+	cd01982, Chlide_reductase_Z, Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ)	NA|262aa|down_7|NC_012032.1_5088867_5089653_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|429aa|down_8|NC_012032.1_5091356_5092643_-	cd06116, CaCS_like, Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like	NA|993aa|down_9|NC_012032.1_5092879_5095858_-	NA
GCF_000022185.1_ASM2218v1	NC_012032	Chloroflexus aurantiacus Y-400-fl, complete sequence	31	5195607-5195974	4	CRT	no		csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	Orphan	GAACAGGCCCGCCGCGAAGCCGAGGCNCGGGC	32	2	2	5195849-5195879|5195912-5195942	NC_012032.1_3730123-3730093|NC_012032.1_3730186-3730156	NA	5	5	Orphan	csa3,cas5,cas7,cas8a4,cas3,WYL,cas2,cas1,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,c2c9_V-U4,csx15,DinG,csx3,csx10gr5,csx19,DEDDh,cas8b2,cas4,RT	NA|348aa|up_5|NC_012032.1_5185822_5186866_+,NA|48aa|up_4|NC_012032.1_5187601_5187745_+,NA|81aa|down_6|NC_012032.1_5204747_5204990_-	NA|703aa|up_9|NC_012032.1_5177741_5179850_+	PRK15098, PRK15098, beta-glucosidase BglX	NA|329aa|up_8|NC_012032.1_5179899_5180886_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|499aa|up_7|NC_012032.1_5181985_5183482_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|410aa|up_6|NC_012032.1_5184227_5185457_-	cd19963, PBP1_BMP-like, periplasmic binding component of a basic membrane lipoprotein (BMP) from Brucella abortus and its close homologs in other bacteria	NA|348aa|up_5|NC_012032.1_5185822_5186866_+	NA	NA|48aa|up_4|NC_012032.1_5187601_5187745_+	NA	NA|518aa|up_3|NC_012032.1_5188294_5189848_+	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional	NA|393aa|up_2|NC_012032.1_5189829_5191008_-	PRK00064, recF, recombination protein F; Reviewed	NA|347aa|up_1|NC_012032.1_5191028_5192069_-	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|523aa|up_0|NC_012032.1_5192410_5193979_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|457aa|down_0|NC_012032.1_5196741_5198112_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|393aa|down_1|NC_012032.1_5198124_5199303_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|278aa|down_2|NC_012032.1_5199312_5200146_-	cd16443, LplA, lipoate-protein ligase	NA|375aa|down_3|NC_012032.1_5200127_5201252_-	pfam06224, HTH_42, Winged helix DNA-binding domain	NA|825aa|down_4|NC_012032.1_5201248_5203723_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|306aa|down_5|NC_012032.1_5203770_5204688_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|81aa|down_6|NC_012032.1_5204747_5204990_-	NA	NA|211aa|down_7|NC_012032.1_5205071_5205704_-	cd07403, MPP_TTHA0053, Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain	NA|525aa|down_8|NC_012032.1_5205821_5207396_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|911aa|down_9|NC_012032.1_5208360_5211093_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed
