assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	1	51701-51805	1	CRISPRCasFinder	no		RT,DEDDh,PD-DExK,cas3	Orphan	CGTCATCCCGCTACTTGTTAGCGG	24	1	1	51725-51781	NC_012416.1_936845-936901	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA|722aa|up_9|NC_012416.1_35592_37758_-,NA|315aa|up_2|NC_012416.1_45108_46053_-,NA|202aa|down_5|NC_012416.1_57431_58037_+	NA|722aa|up_9|NC_012416.1_35592_37758_-	NA	NA|289aa|up_8|NC_012416.1_38171_39038_+	sd00045, ANK, ankyrin repeats	NA|309aa|up_7|NC_012416.1_39341_40268_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|118aa|up_6|NC_012416.1_40257_40611_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|421aa|up_5|NC_012416.1_40652_41915_-	PRK05137, tolB, Tol-Pal system protein TolB	NA|545aa|up_4|NC_012416.1_41920_43555_-	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|373aa|up_3|NC_012416.1_43763_44882_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|315aa|up_2|NC_012416.1_45108_46053_-	NA	NA|214aa|up_1|NC_012416.1_49327_49969_+	cd03459, 3,4-PCD, Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate	NA|501aa|up_0|NC_012416.1_50065_51568_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|396aa|down_0|NC_012416.1_52262_53450_+	cd06174, MFS, Major Facilitator Superfamily	NA|102aa|down_1|NC_012416.1_53510_53816_+	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA)	NA|109aa|down_2|NC_012416.1_53815_54142_+	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators	NA|199aa|down_3|NC_012416.1_54187_54784_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|839aa|down_4|NC_012416.1_54796_57313_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|202aa|down_5|NC_012416.1_57431_58037_+	NA	NA|278aa|down_6|NC_012416.1_58617_59450_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|55aa|down_7|NC_012416.1_59474_59639_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|54aa|down_8|NC_012416.1_59631_59793_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|145aa|down_9|NC_012416.1_59796_60231_-	pfam13276, HTH_21, HTH-like domain
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	2	296536-296634	2	CRISPRCasFinder	no		RT,DEDDh,PD-DExK,cas3	Orphan	ACCAAATGCTGCTCAGTTAAAAGATAAAGA	30	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA|91aa|up_7|NC_012416.1_286623_286896_+,NA|266aa|up_6|NC_012416.1_287088_287886_-,NA|404aa|down_4|NC_012416.1_300163_301375_-,NA|195aa|down_7|NC_012416.1_304560_305145_+,NA|47aa|down_8|NC_012416.1_305328_305469_+	NA|216aa|up_9|NC_012416.1_283676_284324_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|214aa|up_8|NC_012416.1_284307_284949_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|91aa|up_7|NC_012416.1_286623_286896_+	NA	NA|266aa|up_6|NC_012416.1_287088_287886_-	NA	NA|225aa|up_5|NC_012416.1_287935_288610_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|468aa|up_4|NC_012416.1_288640_290044_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|376aa|up_3|NC_012416.1_290202_291330_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_2|NC_012416.1_291503_292235_-	COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	NA|222aa|up_1|NC_012416.1_292238_292904_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|824aa|up_0|NC_012416.1_293041_295513_-	PRK13208, valS, valyl-tRNA synthetase; Reviewed	NA|172aa|down_0|NC_012416.1_297074_297590_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|107aa|down_1|NC_012416.1_297734_298055_+	TIGR00810, secG, protein translocase, SecG subunit	NA|535aa|down_2|NC_012416.1_298054_299659_+	PRK05380, pyrG, CTP synthetase; Validated	NA|136aa|down_3|NC_012416.1_299684_300092_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|404aa|down_4|NC_012416.1_300163_301375_-	NA	NA|492aa|down_5|NC_012416.1_301440_302916_-	sd00045, ANK, ankyrin repeats	NA|422aa|down_6|NC_012416.1_303165_304431_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|195aa|down_7|NC_012416.1_304560_305145_+	NA	NA|47aa|down_8|NC_012416.1_305328_305469_+	NA	NA|366aa|down_9|NC_012416.1_305478_306576_+	PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	3	316495-316593	3	CRISPRCasFinder	no		RT,DEDDh,PD-DExK,cas3	Orphan	AGAATTGCGATCTATAATCATAAG	24	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA|195aa|up_9|NC_012416.1_304560_305145_+,NA|47aa|up_8|NC_012416.1_305328_305469_+,NA|126aa|up_1|NC_012416.1_314768_315146_+,NA|315aa|down_1|NC_012416.1_320518_321463_-	NA|195aa|up_9|NC_012416.1_304560_305145_+	NA	NA|47aa|up_8|NC_012416.1_305328_305469_+	NA	NA|366aa|up_7|NC_012416.1_305478_306576_+	PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional	NA|333aa|up_6|NC_012416.1_306816_307815_+	PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated	NA|125aa|up_5|NC_012416.1_307790_308165_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|461aa|up_4|NC_012416.1_308552_309935_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|599aa|up_3|NC_012416.1_310501_312298_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|468aa|up_2|NC_012416.1_312377_313781_-	pfam05292, MCD, Malonyl-CoA decarboxylase C-terminal domain	NA|126aa|up_1|NC_012416.1_314768_315146_+	NA	NA|178aa|up_0|NC_012416.1_315397_315931_+	TIGR01543, Putative_prohead_protease, phage prohead protease, HK97 family	NA|391aa|down_0|NC_012416.1_319262_320435_-	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]	NA|315aa|down_1|NC_012416.1_320518_321463_-	NA	NA|365aa|down_2|NC_012416.1_321581_322676_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|401aa|down_3|NC_012416.1_322778_323981_+	sd00045, ANK, ankyrin repeats	NA|602aa|down_4|NC_012416.1_323973_325779_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|202aa|down_5|NC_012416.1_325762_326368_+	PRK00300, gmk, guanylate kinase; Provisional	NA|930aa|down_6|NC_012416.1_326654_329444_+	PHA03095, PHA03095, ankyrin-like protein; Provisional	NA|600aa|down_7|NC_012416.1_329415_331215_-	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|477aa|down_8|NC_012416.1_331960_333391_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|238aa|down_9|NC_012416.1_333541_334255_+	sd00045, ANK, ankyrin repeats
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	4	346171-346275	4	CRISPRCasFinder	no		RT,DEDDh,PD-DExK,cas3	Orphan	AGCATCAAAAAATTCTTCTTCCTC	24	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA|88aa|up_1|NC_012416.1_341166_341430_+,NA	NA|238aa|up_9|NC_012416.1_333541_334255_+	sd00045, ANK, ankyrin repeats	NA|692aa|up_8|NC_012416.1_334318_336394_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|343aa|up_7|NC_012416.1_336342_337371_-	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|533aa|up_6|NC_012416.1_337352_338951_-	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily	NA|159aa|up_5|NC_012416.1_338956_339433_-	COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]	NA|160aa|up_4|NC_012416.1_339441_339921_-	PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional	NA|76aa|up_3|NC_012416.1_339924_340152_-	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated	NA|242aa|up_2|NC_012416.1_340211_340937_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|88aa|up_1|NC_012416.1_341166_341430_+	NA	NA|780aa|up_0|NC_012416.1_341542_343882_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|1104aa|down_0|NC_012416.1_346430_349742_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|489aa|down_1|NC_012416.1_349918_351385_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|440aa|down_2|NC_012416.1_351524_352844_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|143aa|down_3|NC_012416.1_353455_353884_-	pfam03653, UPF0093, Uncharacterized protein family (UPF0093)	NA|327aa|down_4|NC_012416.1_353939_354920_+	TIGR03182, Pyruvate_dehydrogenase_E1_component_subunit_alpha, pyruvate dehydrogenase E1 component, alpha subunit	NA|308aa|down_5|NC_012416.1_355328_356252_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|421aa|down_6|NC_012416.1_356259_357522_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|601aa|down_7|NC_012416.1_357583_359386_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|208aa|down_8|NC_012416.1_360016_360640_+	PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional	NA|432aa|down_9|NC_012416.1_361666_362962_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	5	374548-374658	5	CRISPRCasFinder	no	RT	RT,DEDDh,PD-DExK,cas3	Unclear	GAGATACCGCGGCGGTATGACGGTTCGCGG	30	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA,NA|48aa|down_1|NC_012416.1_375439_375583_+	NA|169aa|up_9|NC_012416.1_366385_366892_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|64aa|up_8|NC_012416.1_366960_367152_+	pfam10276, zf-CHCC, Zinc-finger domain	NA|209aa|up_7|NC_012416.1_367168_367795_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|232aa|up_6|NC_012416.1_367784_368480_-	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase	NA|186aa|up_5|NC_012416.1_368755_369313_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|244aa|up_4|NC_012416.1_369320_370052_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|287aa|up_3|NC_012416.1_370074_370935_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|283aa|up_2|NC_012416.1_370915_371764_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|124aa|up_1|NC_012416.1_372169_372541_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|604aa|up_0|NC_012416.1_372621_374433_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|148aa|down_0|NC_012416.1_374739_375183_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|48aa|down_1|NC_012416.1_375439_375583_+	NA	RT|516aa|down_2|NC_012416.1_375620_377168_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|270aa|down_3|NC_012416.1_377164_377974_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|278aa|down_4|NC_012416.1_378151_378984_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|296aa|down_5|NC_012416.1_379158_380046_-	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase	NA|293aa|down_6|NC_012416.1_380036_380915_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|391aa|down_7|NC_012416.1_381868_383041_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|1023aa|down_8|NC_012416.1_383079_386148_-	pfam17874, TPR_MalT, MalT-like TPR region	NA|278aa|down_9|NC_012416.1_387243_388076_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	6	418918-419367	1	CRT	no		RT,DEDDh,PD-DExK,cas3	Orphan	GNGNGANNANAANNTCGTCATCCCGCTNCNTGTTAGCGGNATCT	44	2	3	419202-419246|419291-419323|419291-419323	NC_012416.1_1327296-1327340|NC_012416.1_374628-374660|NC_012416.1_1013422-1013454	NA	5	5	Orphan	RT,DEDDh,PD-DExK,cas3	NA|198aa|up_2|NC_012416.1_412953_413547_-,NA|48aa|down_1|NC_012416.1_420176_420320_+	NA|393aa|up_9|NC_012416.1_406126_407305_-	PRK01278, argD, acetylornithine transaminase protein; Provisional	NA|391aa|up_8|NC_012416.1_407580_408753_+	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|114aa|up_7|NC_012416.1_409428_409770_+	pfam13276, HTH_21, HTH-like domain	NA|54aa|up_6|NC_012416.1_409854_410016_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|55aa|up_5|NC_012416.1_410008_410173_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|569aa|up_4|NC_012416.1_410331_412038_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|232aa|up_3|NC_012416.1_412171_412867_-	TIGR00115, tig, trigger factor	NA|198aa|up_2|NC_012416.1_412953_413547_-	NA	NA|660aa|up_1|NC_012416.1_414444_416424_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|570aa|up_0|NC_012416.1_416625_418335_-	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|148aa|down_0|NC_012416.1_419476_419920_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|48aa|down_1|NC_012416.1_420176_420320_+	NA	NA|341aa|down_2|NC_012416.1_421831_422854_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|247aa|down_3|NC_012416.1_423390_424131_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|372aa|down_4|NC_012416.1_424325_425441_-	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|239aa|down_5|NC_012416.1_425437_426154_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|288aa|down_6|NC_012416.1_426207_427071_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|105aa|down_7|NC_012416.1_427063_427378_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|114aa|down_8|NC_012416.1_427415_427757_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|67aa|down_9|NC_012416.1_428095_428296_-	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	7	842142-842456	2	CRT	no	cas3	RT,DEDDh,PD-DExK,cas3	Unclear	CGTCATCCCGCTACGTGTTAGCGG	24	0	0	NA	NA	NA	4	4	Unclear	RT,DEDDh,PD-DExK,cas3	NA|179aa|up_2|NC_012416.1_839805_840342_+,NA|265aa|down_2|NC_012416.1_844789_845584_-,NA|157aa|down_5|NC_012416.1_847202_847673_-,NA|316aa|down_7|NC_012416.1_848629_849577_-,NA|96aa|down_9|NC_012416.1_852935_853223_+	NA|107aa|up_9|NC_012416.1_830653_830974_+	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|326aa|up_8|NC_012416.1_830984_831962_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|190aa|up_7|NC_012416.1_832023_832593_+	cd00446, GrpE, nucleotide exchange factor GrpE	NA|333aa|up_6|NC_012416.1_832610_833609_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|254aa|up_5|NC_012416.1_833784_834546_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|176aa|up_4|NC_012416.1_834547_835075_-	COG3474, COG3474, Cytochrome c2 [Energy production and conversion]	NA|461aa|up_3|NC_012416.1_837844_839227_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|179aa|up_2|NC_012416.1_839805_840342_+	NA	NA|423aa|up_1|NC_012416.1_840443_841712_+	PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional	NA|119aa|up_0|NC_012416.1_841708_842065_+	PRK14659, acpS, holo-[acyl-carrier-protein] synthase	NA|499aa|down_0|NC_012416.1_842575_844072_+	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|221aa|down_1|NC_012416.1_844068_844731_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|265aa|down_2|NC_012416.1_844789_845584_-	NA	NA|274aa|down_3|NC_012416.1_845657_846479_-	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit	NA|196aa|down_4|NC_012416.1_846496_847084_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|157aa|down_5|NC_012416.1_847202_847673_-	NA	NA|295aa|down_6|NC_012416.1_847748_848633_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|316aa|down_7|NC_012416.1_848629_849577_-	NA	cas3|674aa|down_8|NC_012416.1_849881_851903_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|96aa|down_9|NC_012416.1_852935_853223_+	NA
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	8	852778-852874	6	CRISPRCasFinder	no	cas3	RT,DEDDh,PD-DExK,cas3	Unclear	CGTCATCCCGCTGCTTGTTAGCG	23	1	3	852801-852851|852801-852851|852801-852851	NC_012416.1_711661-711611|NC_012416.1_711773-711723|NC_012416.1_1203582-1203632	NA	1	1	Unclear	RT,DEDDh,PD-DExK,cas3	NA|265aa|up_6|NC_012416.1_844789_845584_-,NA|157aa|up_3|NC_012416.1_847202_847673_-,NA|316aa|up_1|NC_012416.1_848629_849577_-,NA|96aa|down_0|NC_012416.1_852935_853223_+,NA|192aa|down_1|NC_012416.1_853238_853814_-,NA|430aa|down_2|NC_012416.1_854654_855944_-,NA|435aa|down_7|NC_012416.1_862647_863952_+,NA|77aa|down_8|NC_012416.1_864045_864276_+,NA|671aa|down_9|NC_012416.1_864296_866309_+	NA|119aa|up_9|NC_012416.1_841708_842065_+	PRK14659, acpS, holo-[acyl-carrier-protein] synthase	NA|499aa|up_8|NC_012416.1_842575_844072_+	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|221aa|up_7|NC_012416.1_844068_844731_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|265aa|up_6|NC_012416.1_844789_845584_-	NA	NA|274aa|up_5|NC_012416.1_845657_846479_-	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit	NA|196aa|up_4|NC_012416.1_846496_847084_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|157aa|up_3|NC_012416.1_847202_847673_-	NA	NA|295aa|up_2|NC_012416.1_847748_848633_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|316aa|up_1|NC_012416.1_848629_849577_-	NA	cas3|674aa|up_0|NC_012416.1_849881_851903_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|96aa|down_0|NC_012416.1_852935_853223_+	NA	NA|192aa|down_1|NC_012416.1_853238_853814_-	NA	NA|430aa|down_2|NC_012416.1_854654_855944_-	NA	NA|278aa|down_3|NC_012416.1_856051_856884_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|345aa|down_4|NC_012416.1_857908_858943_+	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|291aa|down_5|NC_012416.1_858945_859818_+	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|495aa|down_6|NC_012416.1_859821_861306_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|435aa|down_7|NC_012416.1_862647_863952_+	NA	NA|77aa|down_8|NC_012416.1_864045_864276_+	NA	NA|671aa|down_9|NC_012416.1_864296_866309_+	NA
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	9	1013342-1013452	7	CRISPRCasFinder	no	RT	RT,DEDDh,PD-DExK,cas3	Unclear	GAGATACCGCGGCGGTATGACGGTTCGCGG	30	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA|792aa|up_2|NC_012416.1_1008925_1011301_+,NA|166aa|up_1|NC_012416.1_1011527_1012025_+,NA|48aa|down_1|NC_012416.1_1014231_1014375_+,NA|166aa|down_6|NC_012416.1_1019949_1020447_+,NA|346aa|down_9|NC_012416.1_1022204_1023242_-	NA|443aa|up_9|NC_012416.1_1001428_1002757_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|339aa|up_8|NC_012416.1_1003060_1004077_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|319aa|up_7|NC_012416.1_1004823_1005780_-	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|346aa|up_6|NC_012416.1_1005772_1006810_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|61aa|up_5|NC_012416.1_1006820_1007003_-	PRK01110, rpmF, 50S ribosomal protein L32; Validated	NA|261aa|up_4|NC_012416.1_1007341_1008124_+	pfam02405, MlaE, Permease MlaE	NA|234aa|up_3|NC_012416.1_1008116_1008818_+	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents	NA|792aa|up_2|NC_012416.1_1008925_1011301_+	NA	NA|166aa|up_1|NC_012416.1_1011527_1012025_+	NA	NA|388aa|up_0|NC_012416.1_1012090_1013254_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|148aa|down_0|NC_012416.1_1013533_1013977_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|48aa|down_1|NC_012416.1_1014231_1014375_+	NA	RT|516aa|down_2|NC_012416.1_1014412_1015960_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|263aa|down_3|NC_012416.1_1015956_1016745_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|416aa|down_4|NC_012416.1_1016779_1018027_-	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|473aa|down_5|NC_012416.1_1018313_1019732_-	PRK10735, tldD, protease TldD; Provisional	NA|166aa|down_6|NC_012416.1_1019949_1020447_+	NA	NA|236aa|down_7|NC_012416.1_1020691_1021399_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|260aa|down_8|NC_012416.1_1021398_1022178_+	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|346aa|down_9|NC_012416.1_1022204_1023242_-	NA
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	10	1040928-1041068	8	CRISPRCasFinder	no		RT,DEDDh,PD-DExK,cas3	Orphan	GATATTGATGAGGGTTTTGAGGAGATTGATCTTGCAGAAATTGATGAG	48	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA|122aa|up_7|NC_012416.1_1029236_1029602_-,NA|64aa|down_1|NC_012416.1_1042317_1042509_+,NA|78aa|down_4|NC_012416.1_1044411_1044645_-	NA|269aa|up_9|NC_012416.1_1027370_1028177_-	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|215aa|up_8|NC_012416.1_1028182_1028827_-	pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase	NA|122aa|up_7|NC_012416.1_1029236_1029602_-	NA	NA|556aa|up_6|NC_012416.1_1029723_1031391_-	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|645aa|up_5|NC_012416.1_1031399_1033334_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|499aa|up_4|NC_012416.1_1033748_1035245_+	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|138aa|up_3|NC_012416.1_1035237_1035651_+	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain	NA|848aa|up_2|NC_012416.1_1035647_1038191_+	pfam13502, AsmA_2, AsmA-like C-terminal region	NA|461aa|up_1|NC_012416.1_1038464_1039847_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|266aa|up_0|NC_012416.1_1039956_1040753_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|278aa|down_0|NC_012416.1_1041488_1042321_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|64aa|down_1|NC_012416.1_1042317_1042509_+	NA	NA|398aa|down_2|NC_012416.1_1042743_1043937_-	COG4695, COG4695, Phage-related protein [Function unknown]	NA|88aa|down_3|NC_012416.1_1044172_1044436_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|78aa|down_4|NC_012416.1_1044411_1044645_-	NA	NA|206aa|down_5|NC_012416.1_1044898_1045516_+	PRK14341, PRK14341, lipoyl(octanoyl) transferase LipB	NA|328aa|down_6|NC_012416.1_1045515_1046499_+	cd07025, Peptidase_S66, LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein	NA|488aa|down_7|NC_012416.1_1046823_1048287_-	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown]	NA|266aa|down_8|NC_012416.1_1049066_1049864_-	pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase domain	NA|417aa|down_9|NC_012416.1_1049870_1051121_-	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	11	1203648-1203758	9	CRISPRCasFinder	no		RT,DEDDh,PD-DExK,cas3	Orphan	TGTTAGCGGGATCTAGAGATACCGCG	26	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA,NA	NA|461aa|up_9|NC_012416.1_1192875_1194258_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|246aa|up_8|NC_012416.1_1194348_1195086_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|253aa|up_7|NC_012416.1_1195554_1196313_-	pfam02167, Cytochrom_C1, Cytochrome C1 family	NA|410aa|up_6|NC_012416.1_1196681_1197911_-	MTH00156, CYTB, cytochrome b; Provisional	NA|57aa|up_5|NC_012416.1_1198015_1198186_-	PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional	NA|498aa|up_4|NC_012416.1_1198290_1199784_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|120aa|up_3|NC_012416.1_1199803_1200163_-	PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional	NA|191aa|up_2|NC_012416.1_1200224_1200797_+	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal	NA|409aa|up_1|NC_012416.1_1200793_1202020_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|251aa|up_0|NC_012416.1_1202040_1202793_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|448aa|down_0|NC_012416.1_1203917_1205261_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|520aa|down_1|NC_012416.1_1205245_1206805_-	PRK12664, PRK12664, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|920aa|down_2|NC_012416.1_1207108_1209868_-	PRK06567, PRK06567, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated	NA|144aa|down_3|NC_012416.1_1209913_1210345_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|184aa|down_4|NC_012416.1_1210349_1210901_-	smart00935, OmpH, Outer membrane protein (OmpH-like)	NA|779aa|down_5|NC_012416.1_1210901_1213238_-	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	NA|373aa|down_6|NC_012416.1_1213246_1214365_-	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]	NA|93aa|down_7|NC_012416.1_1214464_1214743_+	pfam03937, Sdh5, Flavinator of succinate dehydrogenase	NA|109aa|down_8|NC_012416.1_1214717_1215044_-	pfam05164, ZapA, Cell division protein ZapA	NA|93aa|down_9|NC_012416.1_1215116_1215395_-	cd13836, IHF_B, Beta subunit of integration host factor (IHFB)
GCF_000022285.1_ASM2228v1	NC_012416	Wolbachia sp. wRi, complete sequence	12	1327149-1327254	10	CRISPRCasFinder	no		RT,DEDDh,PD-DExK,cas3	Orphan	GCGGTATGACGGTTCGCGGCGGCAT	25	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,PD-DExK,cas3	NA|223aa|up_6|NC_012416.1_1317692_1318361_-,NA|408aa|down_0|NC_012416.1_1327501_1328725_+,NA|346aa|down_5|NC_012416.1_1332408_1333446_-,NA|103aa|down_7|NC_012416.1_1334465_1334774_+	NA|573aa|up_9|NC_012416.1_1314704_1316423_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|191aa|up_8|NC_012416.1_1316428_1317001_-	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs	NA|197aa|up_7|NC_012416.1_1317109_1317700_+	PRK13976, PRK13976, dTMP kinase	NA|223aa|up_6|NC_012416.1_1317692_1318361_-	NA	NA|613aa|up_5|NC_012416.1_1318515_1320354_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|432aa|up_4|NC_012416.1_1320366_1321662_-	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|160aa|up_3|NC_012416.1_1321846_1322326_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|474aa|up_2|NC_012416.1_1322601_1324023_+	pfam02074, Peptidase_M32, Carboxypeptidase Taq (M32) metallopeptidase	NA|359aa|up_1|NC_012416.1_1324046_1325123_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|371aa|up_0|NC_012416.1_1325439_1326552_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|408aa|down_0|NC_012416.1_1327501_1328725_+	NA	NA|172aa|down_1|NC_012416.1_1328794_1329310_+	PRK01250, PRK01250, inorganic diphosphatase	NA|382aa|down_2|NC_012416.1_1329975_1331121_+	pfam13624, SurA_N_3, SurA N-terminal domain	NA|207aa|down_3|NC_012416.1_1331208_1331829_+	cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins	NA|184aa|down_4|NC_012416.1_1331812_1332364_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|346aa|down_5|NC_012416.1_1332408_1333446_-	NA	NA|236aa|down_6|NC_012416.1_1333582_1334290_+	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB	NA|103aa|down_7|NC_012416.1_1334465_1334774_+	NA	NA|516aa|down_8|NC_012416.1_1334776_1336324_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|310aa|down_9|NC_012416.1_1336344_1337274_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
