assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000022705.1_ASM2270v1	NC_012814	Bifidobacterium animalis subsp. lactis Bl-04, complete sequence	1	183463-183848	1	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	GGTCGGTTTTGCGGATGCTTCCG	23	0	0	NA	NA	NA	7	7	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|246aa|up_8|NC_012814.1_173859_174597_+,NA|244aa|up_5|NC_012814.1_176884_177616_-,NA|54aa|up_4|NC_012814.1_177914_178076_+,NA|153aa|down_4|NC_012814.1_189540_189999_-	NA|461aa|up_9|NC_012814.1_172047_173430_+	TIGR03356, BGL, beta-galactosidase	NA|246aa|up_8|NC_012814.1_173859_174597_+	NA	NA|343aa|up_7|NC_012814.1_174853_175882_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|212aa|up_6|NC_012814.1_176165_176801_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|244aa|up_5|NC_012814.1_176884_177616_-	NA	NA|54aa|up_4|NC_012814.1_177914_178076_+	NA	NA|422aa|up_3|NC_012814.1_178389_179655_+	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)	NA|247aa|up_2|NC_012814.1_180182_180923_+	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|289aa|up_1|NC_012814.1_180924_181791_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|499aa|up_0|NC_012814.1_181943_183440_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|234aa|down_0|NC_012814.1_184021_184723_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|985aa|down_1|NC_012814.1_184733_187688_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|515aa|down_2|NC_012814.1_187742_189287_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|82aa|down_3|NC_012814.1_189298_189544_-	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|153aa|down_4|NC_012814.1_189540_189999_-	NA	NA|574aa|down_5|NC_012814.1_189895_191617_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|141aa|down_6|NC_012814.1_191613_192036_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|198aa|down_7|NC_012814.1_192730_193324_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|640aa|down_8|NC_012814.1_193395_195315_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|612aa|down_9|NC_012814.1_195386_197222_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_000022705.1_ASM2270v1	NC_012814	Bifidobacterium animalis subsp. lactis Bl-04, complete sequence	2	219240-219323	2	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTTCCGTCTCTTTTTACGCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|256aa|up_2|NC_012814.1_215571_216339_+,NA|237aa|up_1|NC_012814.1_216518_217229_-,NA	NA|733aa|up_9|NC_012814.1_204550_206749_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|923aa|up_8|NC_012814.1_206745_209514_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|214aa|up_7|NC_012814.1_209807_210449_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|247aa|up_6|NC_012814.1_210445_211186_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|496aa|up_5|NC_012814.1_211238_212726_+	cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system	NA|528aa|up_4|NC_012814.1_212775_214359_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|294aa|up_3|NC_012814.1_214554_215436_-	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|256aa|up_2|NC_012814.1_215571_216339_+	NA	NA|237aa|up_1|NC_012814.1_216518_217229_-	NA	NA|523aa|up_0|NC_012814.1_217559_219128_+	pfam03577, Peptidase_C69, Peptidase family C69	NA|467aa|down_0|NC_012814.1_220153_221554_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|432aa|down_1|NC_012814.1_221813_223109_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|113aa|down_2|NC_012814.1_223110_223449_+	pfam00543, P-II, Nitrogen regulatory protein P-II	NA|609aa|down_3|NC_012814.1_223759_225586_+	PRK03381, PRK03381, PII uridylyl-transferase; Provisional	NA|91aa|down_4|NC_012814.1_225946_226219_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|460aa|down_5|NC_012814.1_226277_227657_+	TIGR00665, DnaB, replicative DNA helicase	NA|503aa|down_6|NC_012814.1_227753_229262_+	pfam08353, DUF1727, Domain of unknown function (DUF1727)	NA|250aa|down_7|NC_012814.1_229330_230080_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|116aa|down_8|NC_012814.1_230187_230535_+	COG3937, COG3937, Uncharacterized conserved protein [Function unknown]	NA|717aa|down_9|NC_012814.1_230643_232794_+	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]
GCF_000022705.1_ASM2270v1	NC_012814	Bifidobacterium animalis subsp. lactis Bl-04, complete sequence	3	1319465-1319650	1	PILER-CR	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGCGTAAAAAGAGACAGA	19	0	0	NA	NA	NA	2	2	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA|84aa|up_8|NC_012814.1_1307855_1308107_+,NA|225aa|up_0|NC_012814.1_1318787_1319462_+,NA|84aa|down_7|NC_012814.1_1330861_1331113_+	NA|214aa|up_9|NC_012814.1_1307041_1307683_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|84aa|up_8|NC_012814.1_1307855_1308107_+	NA	NA|900aa|up_7|NC_012814.1_1308190_1310890_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|857aa|up_6|NC_012814.1_1310957_1313528_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|196aa|up_5|NC_012814.1_1313576_1314164_-	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|437aa|up_4|NC_012814.1_1314499_1315810_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|257aa|up_3|NC_012814.1_1315923_1316694_-	pfam11361, DUF3159, Protein of unknown function (DUF3159)	NA|286aa|up_2|NC_012814.1_1316762_1317620_-	pfam12502, DUF3710, Protein of unknown function (DUF3710)	NA|287aa|up_1|NC_012814.1_1317753_1318614_-	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|225aa|up_0|NC_012814.1_1318787_1319462_+	NA	NA|663aa|down_0|NC_012814.1_1319721_1321710_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|319aa|down_1|NC_012814.1_1321781_1322738_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|down_2|NC_012814.1_1322751_1323678_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|547aa|down_3|NC_012814.1_1323977_1325618_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|312aa|down_4|NC_012814.1_1325894_1326830_-	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|269aa|down_5|NC_012814.1_1327068_1327875_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|945aa|down_6|NC_012814.1_1327882_1330717_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|84aa|down_7|NC_012814.1_1330861_1331113_+	NA	NA|365aa|down_8|NC_012814.1_1331128_1332223_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|372aa|down_9|NC_012814.1_1332231_1333347_-	cd13632, PBP2_Aa-PDT_like, Catalytic domain of prephenate dehydratase from Arthrobacter aurescens and similar proteins, subgroup 3; the type 2 periplasmic binding protein fold
GCF_000022705.1_ASM2270v1	NC_012814	Bifidobacterium animalis subsp. lactis Bl-04, complete sequence	4	1511615-1513233	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	csb3,cas3,csb2gr5,cas7,cas2,cas1	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Unclear	CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT,CCCTCAATGAAGCTCCGAAGCCGAGACTTCGGAGAT	36,36,36	0	0	NA	NA	NA:NA:NA	22,22,22	22	Unclear	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA,NA|230aa|down_4|NC_012814.1_1520955_1521645_+	NA|189aa|up_9|NC_012814.1_1499184_1499751_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|171aa|up_8|NC_012814.1_1499864_1500377_+	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|72aa|up_7|NC_012814.1_1501380_1501596_+	pfam18495, VbhA, Antitoxin VbhA	NA|103aa|up_6|NC_012814.1_1501922_1502231_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csb3|349aa|up_5|NC_012814.1_1502289_1503336_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|1018aa|up_4|NC_012814.1_1503339_1506393_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|546aa|up_3|NC_012814.1_1506383_1508021_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|399aa|up_2|NC_012814.1_1508039_1509236_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas2|98aa|up_1|NC_012814.1_1509649_1509943_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|544aa|up_0|NC_012814.1_1509954_1511586_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|424aa|down_0|NC_012814.1_1513412_1514684_-	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type	NA|1559aa|down_1|NC_012814.1_1514757_1519434_-	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]	NA|206aa|down_2|NC_012814.1_1519677_1520295_+	pfam06736, DUF1211, Protein of unknown function (DUF1211)	NA|134aa|down_3|NC_012814.1_1520291_1520693_+	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|230aa|down_4|NC_012814.1_1520955_1521645_+	NA	NA|244aa|down_5|NC_012814.1_1521641_1522373_-	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|809aa|down_6|NC_012814.1_1522732_1525159_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|433aa|down_7|NC_012814.1_1525515_1526814_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|106aa|down_8|NC_012814.1_1526857_1527175_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|342aa|down_9|NC_012814.1_1527175_1528201_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family
GCF_000022705.1_ASM2270v1	NC_012814	Bifidobacterium animalis subsp. lactis Bl-04, complete sequence	5	1911846-1911936	4	CRISPRCasFinder	no		casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	Orphan	TTGGCGTCCATGTCACGCGCGGAATCGAT	29	0	0	NA	NA	NA	1	1	Orphan	casR,WYL,cas3,DEDDh,csb3,csb2gr5,cas7,cas2,cas1	NA,NA|750aa|down_9|NC_012814.1_1924225_1926475_+	NA|741aa|up_9|NC_012814.1_1895774_1897997_-	pfam02065, Melibiase, Melibiase	NA|170aa|up_8|NC_012814.1_1898112_1898622_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|691aa|up_7|NC_012814.1_1898771_1900844_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|313aa|up_6|NC_012814.1_1900914_1901853_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|520aa|up_5|NC_012814.1_1901895_1903455_-	NF012221, MARTX_Nterm, MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA|194aa|up_4|NC_012814.1_1903504_1904086_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|997aa|up_3|NC_012814.1_1904295_1907286_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|332aa|up_2|NC_012814.1_1907600_1908596_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|483aa|up_1|NC_012814.1_1908744_1910193_-	pfam13224, DUF4032, Domain of unknown function (DUF4032)	NA|378aa|up_0|NC_012814.1_1910400_1911534_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|341aa|down_0|NC_012814.1_1911957_1912980_+	pfam07885, Ion_trans_2, Ion channel	NA|706aa|down_1|NC_012814.1_1913049_1915167_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|346aa|down_2|NC_012814.1_1915546_1916584_+	PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional	NA|516aa|down_3|NC_012814.1_1917251_1918799_+	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown]	NA|298aa|down_4|NC_012814.1_1918940_1919834_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|319aa|down_5|NC_012814.1_1919830_1920787_+	COG1947, IspE, 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	NA|209aa|down_6|NC_012814.1_1920858_1921485_+	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator	NA|473aa|down_7|NC_012814.1_1921614_1923033_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|335aa|down_8|NC_012814.1_1923218_1924223_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|750aa|down_9|NC_012814.1_1924225_1926475_+	NA
