The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012850	Rhizobium leguminosarum bv. trifolii WSM1325, complete sequence	4767043	1246059	1255309	4767043		Aeromonas_phage(14.29%)	9	NA	NA
WP_012756885.1|1246059_1247358_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.0	1.9e-97
WP_003547190.1|1247367_1247844_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_012756886.1|1247847_1249164_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.9	2.8e-32
WP_012756887.1|1249163_1249775_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.4	2.6e-17
WP_012756888.1|1249897_1250767_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.2	6.8e-96
WP_012756889.1|1250777_1251665_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_012756890.1|1251668_1252724_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	2.0e-94
WP_012756891.1|1252730_1253309_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	42.4	3.2e-33
WP_012756892.1|1253332_1255309_-	hypothetical protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	36.4	8.7e-06
>prophage 2
NC_012850	Rhizobium leguminosarum bv. trifolii WSM1325, complete sequence	4767043	1318552	1329334	4767043	protease	Bacillus_phage(16.67%)	7	NA	NA
WP_017993614.1|1318552_1319968_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.5	5.8e-12
WP_012756949.1|1320258_1320888_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	58.7	2.7e-62
WP_003547337.1|1321191_1322469_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.6	7.9e-133
WP_012756950.1|1322870_1325288_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.6	1.0e-205
WP_003547346.1|1325494_1325770_+	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	34.1	7.1e-07
WP_012756951.1|1326138_1327050_+	DMT family transporter	NA	NA	NA	NA	NA
WP_171815678.1|1327123_1329334_+	esterase-like activity of phytase family protein	NA	M4SLV1	Cyanophage	42.9	1.6e-80
>prophage 3
NC_012850	Rhizobium leguminosarum bv. trifolii WSM1325, complete sequence	4767043	1679393	1692794	4767043	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_012757236.1|1679393_1680407_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	1.6e-24
WP_012757237.1|1680425_1681283_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.5	5.6e-34
WP_012757238.1|1681279_1681996_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.5	3.1e-38
WP_012483600.1|1682181_1682373_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	70.5	8.9e-09
WP_012757240.1|1682424_1683036_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_012757241.1|1683032_1683860_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.5	1.2e-52
WP_012757242.1|1684059_1685343_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	1.1e-97
WP_012757243.1|1685347_1686121_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	3.1e-23
WP_012757244.1|1686117_1686771_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	33.5	9.9e-15
WP_012757245.1|1687012_1688617_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	5.1e-12
WP_012757246.1|1688781_1689654_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003558894.1|1689860_1690208_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	2.4e-12
WP_012757247.1|1690253_1692794_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	49.8	7.4e-58
>prophage 4
NC_012850	Rhizobium leguminosarum bv. trifolii WSM1325, complete sequence	4767043	1916895	1927717	4767043		uncultured_Mediterranean_phage(83.33%)	9	NA	NA
WP_012757439.1|1916895_1919817_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.0	0.0e+00
WP_012757440.1|1920101_1920611_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	73.7	1.2e-44
WP_012757441.1|1920739_1921285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012757442.1|1921307_1921955_-	MarC family protein	NA	NA	NA	NA	NA
WP_012757443.1|1922191_1925029_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	41.6	1.2e-75
WP_003539654.1|1925365_1925521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012757446.1|1926068_1926563_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	36.5	6.7e-24
WP_012757447.1|1926605_1927178_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	52.6	2.2e-42
WP_003559389.1|1927207_1927717_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	4.2e-45
>prophage 5
NC_012850	Rhizobium leguminosarum bv. trifolii WSM1325, complete sequence	4767043	2944599	2958155	4767043		Vibrio_phage(25.0%)	10	NA	NA
WP_003561200.1|2944599_2946657_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.7e-36
WP_003561203.1|2947124_2947472_-	GFA family protein	NA	NA	NA	NA	NA
WP_012758380.1|2947481_2948519_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	7.1e-15
WP_012758381.1|2948629_2949817_-	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.8	4.9e-36
WP_012758382.1|2949982_2950711_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	42.4	1.5e-48
WP_012758383.1|2950782_2952651_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.7	2.4e-77
WP_012758384.1|2952650_2954660_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.1e-88
WP_012758385.1|2955330_2956221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012758386.1|2956224_2956680_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.7	9.0e-15
WP_011652894.1|2956949_2958155_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.6	1.6e-39
>prophage 6
NC_012850	Rhizobium leguminosarum bv. trifolii WSM1325, complete sequence	4767043	3845937	3855998	4767043		Mycobacterium_phage(25.0%)	9	NA	NA
WP_012759103.1|3845937_3846648_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	49.6	1.9e-51
WP_012759104.1|3846647_3847004_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_012759105.1|3847000_3847729_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.0	2.6e-40
WP_012759106.1|3847747_3848980_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	28.8	1.2e-13
WP_012759107.1|3849084_3850059_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	73.8	2.3e-137
WP_017995273.1|3850294_3852418_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.0	6.3e-212
WP_012759109.1|3852414_3852828_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A1YTS5	Staphylococcus_phage	33.9	9.6e-08
WP_012759110.1|3852837_3853059_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	53.4	2.1e-17
WP_041935580.1|3853730_3855998_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.3	6.9e-124
>prophage 1
NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	828924	256902	300328	828924	transposase	Stx2-converting_phage(30.77%)	36	NA	NA
WP_171815722.1|256902_257307_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_171815723.1|257333_257627_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_012755301.1|257619_259209_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	41.6	1.8e-94
WP_012755302.1|259247_259610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012755303.1|260313_262455_-	DEAD/DEAH box helicase	NA	M1HWJ9	Paramecium_bursaria_Chlorella_virus	23.6	2.9e-07
WP_012755304.1|262457_264083_-	DUF1837 domain-containing protein	NA	NA	NA	NA	NA
WP_012755305.1|264544_265168_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	34.3	1.3e-19
WP_012755306.1|268315_268603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012755307.1|269578_270406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012755309.1|271546_272248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085994801.1|273857_275047_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.8	2.5e-48
WP_012755310.1|275590_276520_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080518582.1|276941_277133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012755312.1|277726_277984_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012755314.1|279475_280138_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_012755315.1|280266_280824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012755316.1|281172_281466_-	ferredoxin III, nif-specific	NA	NA	NA	NA	NA
WP_012755317.1|281994_283584_-|transposase	IS66 family transposase	transposase	S5VLC8	Leptospira_phage	32.8	2.6e-37
WP_012755318.1|283791_285447_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	46.5	2.7e-101
WP_003551791.1|285492_285840_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	64.5	8.9e-39
WP_012755319.1|285836_286247_-	IS66 family insertion sequence hypothetical protein	NA	A0A1B0YZU7	Pseudomonas_phage	40.0	9.9e-05
WP_050786652.1|286290_286557_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	50.0	1.9e-12
WP_080518583.1|286537_287020_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZBP6	Stx2-converting_phage	46.8	8.1e-06
WP_012755320.1|287287_288391_-	acyltransferase	NA	A9YX16	Burkholderia_phage	29.4	5.4e-13
WP_012755321.1|288675_289167_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_012755322.1|289246_291073_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1HHR4	Paramecium_bursaria_Chlorella_virus	40.6	1.8e-106
WP_012755323.1|291503_292055_-	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_012755325.1|292543_293752_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA	NA
WP_012755326.1|293751_294030_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_012755327.1|294502_295450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012755328.1|295684_296275_+	NodA family N-acyltransferase	NA	NA	NA	NA	NA
WP_012755329.1|296271_296910_+	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA	NA
WP_012755330.1|296930_298211_+	chitooligosaccharide synthase NodC	NA	NA	NA	NA	NA
WP_012755331.1|298241_299270_+	nodulation factor ABC transporter ATP-binding protein NodI	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	37.3	2.2e-24
WP_012755332.1|299266_300055_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_080518584.1|300058_300328_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 1
NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	350312	177043	186132	350312		Planktothrix_phage(33.33%)	9	NA	NA
WP_012760033.1|177043_178099_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	1.6e-27
WP_012760034.1|178098_178878_+	glycerophosphodiester phosphodiesterase	NA	A0A173GBD0	Staphylococcus_phage	35.2	4.8e-08
WP_012760035.1|178861_179866_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.7	6.0e-19
WP_012760036.1|179865_180675_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_012760037.1|180741_182397_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.1	7.5e-19
WP_012760038.1|182526_183390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012760039.1|183461_184556_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_012760040.1|184567_185347_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	5.7e-17
WP_012760041.1|185343_186132_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.2	1.3e-16
