assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000023605.1_ASM2360v1	NC_012917	Pectobacterium carotovorum subsp. carotovorum PC1, complete genome	1	1330049-1330143	1	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Orphan	TGGAGCAATTTTTAACGCCGCTTGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA,NA	NA|369aa|up_9|NC_012917.1_1320385_1321492_-	cd01139, TroA_f, Periplasmic binding protein TroA_f	NA|213aa|up_8|NC_012917.1_1321785_1322424_-	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|346aa|up_7|NC_012917.1_1322423_1323461_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|209aa|up_6|NC_012917.1_1323798_1324425_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|430aa|up_5|NC_012917.1_1324653_1325943_+	PRK10720, PRK10720, uracil transporter; Provisional	NA|236aa|up_4|NC_012917.1_1326042_1326750_+	PRK08084, PRK08084, DnaA inactivator Hda	NA|124aa|up_3|NC_012917.1_1326848_1327220_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|488aa|up_2|NC_012917.1_1327234_1328698_-	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|156aa|up_1|NC_012917.1_1328867_1329335_-	PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed	NA|183aa|up_0|NC_012917.1_1329443_1329992_-	PRK11589, gcvR, glycine cleavage system transcriptional repressor; Provisional	NA|271aa|down_0|NC_012917.1_1330225_1331038_+	pfam02311, AraC_binding, AraC-like ligand binding domain	NA|121aa|down_1|NC_012917.1_1331114_1331477_+	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain	NA|293aa|down_2|NC_012917.1_1331691_1332570_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|346aa|down_3|NC_012917.1_1332586_1333624_+	PRK11679, PRK11679, outer membrane protein assembly factor BamC	NA|238aa|down_4|NC_012917.1_1333767_1334481_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|151aa|down_5|NC_012917.1_1334701_1335154_+	COG2707, COG2707, Predicted membrane protein [Function unknown]	NA|692aa|down_6|NC_012917.1_1335171_1337247_+	COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]	NA|422aa|down_7|NC_012917.1_1337280_1338546_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|482aa|down_8|NC_012917.1_1338612_1340058_-	PRK10735, tldD, protease TldD; Provisional	NA|455aa|down_9|NC_012917.1_1340092_1341457_-	PRK11040, PRK11040, peptidase PmbA; Provisional
GCF_000023605.1_ASM2360v1	NC_012917	Pectobacterium carotovorum subsp. carotovorum PC1, complete genome	2	1781551-1781647	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Orphan	GCAGGAAGCTCGCCATAAAAAAACG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA,NA	NA|379aa|up_9|NC_012917.1_1769051_1770188_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|392aa|up_8|NC_012917.1_1770197_1771373_-	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|581aa|up_7|NC_012917.1_1771365_1773108_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|343aa|up_6|NC_012917.1_1773100_1774129_-	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|702aa|up_5|NC_012917.1_1774642_1776748_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|337aa|up_4|NC_012917.1_1776737_1777748_+	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|330aa|up_3|NC_012917.1_1777744_1778734_+	pfam01032, FecCD, FecCD transport family	NA|344aa|up_2|NC_012917.1_1778726_1779758_+	pfam01032, FecCD, FecCD transport family	NA|284aa|up_1|NC_012917.1_1779770_1780622_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|270aa|up_0|NC_012917.1_1780611_1781421_+	COG4114, FhuF, Uncharacterized Fe-S protein [General function prediction only]	NA|478aa|down_0|NC_012917.1_1781999_1783433_+	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional	NA|112aa|down_1|NC_012917.1_1783568_1783904_+	pfam07411, DUF1508, Domain of unknown function (DUF1508)	NA|412aa|down_2|NC_012917.1_1783942_1785178_-	PRK13381, PRK13381, peptidase T; Provisional	NA|532aa|down_3|NC_012917.1_1785344_1786940_+	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|224aa|down_4|NC_012917.1_1786986_1787658_-	COG1636, COG1636, Uncharacterized protein conserved in bacteria [Function unknown]	NA|311aa|down_5|NC_012917.1_1787872_1788805_+	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC	NA|471aa|down_6|NC_012917.1_1788977_1790390_+	PRK11387, PRK11387, S-methylmethionine permease	NA|316aa|down_7|NC_012917.1_1790382_1791330_+	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|183aa|down_8|NC_012917.1_1791346_1791895_+	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|181aa|down_9|NC_012917.1_1792293_1792836_+	cd07890, CYTH-like_AC_IV-like, Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily
GCF_000023605.1_ASM2360v1	NC_012917	Pectobacterium carotovorum subsp. carotovorum PC1, complete genome	3	2658299-2658405	3	CRISPRCasFinder	no		csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Orphan	GCGCGTAGCCCACCATAATAAAATGCCAAAGGCATTT	37	1	1	2658336-2658368	NC_012917.1_2658265-2658297	NA	1	1	Orphan	csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA|81aa|up_7|NC_012917.1_2649662_2649905_-,NA|107aa|up_6|NC_012917.1_2649901_2650222_-,NA|292aa|up_4|NC_012917.1_2651847_2652723_+,NA|260aa|down_4|NC_012917.1_2663234_2664014_+	NA|121aa|up_9|NC_012917.1_2647662_2648025_+	pfam13995, YebF, YebF-like protein	NA|269aa|up_8|NC_012917.1_2648031_2648838_-	pfam14859, Colicin_M, Colicin M	NA|81aa|up_7|NC_012917.1_2649662_2649905_-	NA	NA|107aa|up_6|NC_012917.1_2649901_2650222_-	NA	NA|269aa|up_5|NC_012917.1_2650963_2651770_-	TIGR02642, hypothetical_protein_YPTB1803, uncharacterized phage protein	NA|292aa|up_4|NC_012917.1_2651847_2652723_+	NA	NA|76aa|up_3|NC_012917.1_2654887_2655115_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|216aa|up_2|NC_012917.1_2655187_2655835_-	pfam07105, DUF1367, Protein of unknown function (DUF1367)	NA|366aa|up_1|NC_012917.1_2655755_2656853_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|312aa|up_0|NC_012917.1_2656901_2657837_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|328aa|down_0|NC_012917.1_2658687_2659671_-	PRK09546, zntB, zinc transporter ZntB	NA|539aa|down_1|NC_012917.1_2659782_2661399_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|240aa|down_2|NC_012917.1_2661563_2662283_+	PRK10602, PRK10602, murein tripeptide amidase MpaA	NA|168aa|down_3|NC_012917.1_2662362_2662866_+	PRK00522, tpx, thiol peroxidase	NA|260aa|down_4|NC_012917.1_2663234_2664014_+	NA	NA|705aa|down_5|NC_012917.1_2664044_2666159_+	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal	NA|523aa|down_6|NC_012917.1_2666214_2667783_-	PRK10820, PRK10820, transcriptional regulator TyrR	NA|515aa|down_7|NC_012917.1_2667919_2669464_-	cd05678, M20_dipept_like, uncharacterized M20 dipeptidase	NA|348aa|down_8|NC_012917.1_2669624_2670668_-	PRK05415, PRK05415, hypothetical protein; Provisional	NA|466aa|down_9|NC_012917.1_2670664_2672062_-	COG3106, COG3106, Predicted ATPase [General function prediction only]
GCF_000023605.1_ASM2360v1	NC_012917	Pectobacterium carotovorum subsp. carotovorum PC1, complete genome	4	3673351-3673507	4	CRISPRCasFinder	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Type III-B,Type III-A,Type III-C,Type III-D	TGTCCTTACGGACGCTCCCTGACT	24	0	0	NA	NA	NA	2	2	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	NA,csm4gr5|327aa|down_3|NC_012917.1_3677266_3678247_+,PD-DExK|251aa|down_6|NC_012917.1_3680903_3681656_-	NA|866aa|up_9|NC_012917.1_3660573_3663171_-	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family	NA|259aa|up_8|NC_012917.1_3663184_3663961_-	COG3455, COG3455, Type VI protein secretion system component VasF [Intracellular    trafficking, secretion, and vesicular transport]	NA|446aa|up_7|NC_012917.1_3663976_3665314_-	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|174aa|up_6|NC_012917.1_3665316_3665838_-	TIGR03352, VI_chp_3, type VI secretion lipoprotein, VC_A0113 family	NA|407aa|up_5|NC_012917.1_3665837_3667058_-	TIGR03354, VI_FHA, type VI secretion system FHA domain protein	NA|333aa|up_4|NC_012917.1_3667060_3668059_-	TIGR03347, VI_chp_1, type VI secretion protein, VC_A0111 family	NA|589aa|up_3|NC_012917.1_3668022_3669789_-	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family	NA|144aa|up_2|NC_012917.1_3669791_3670223_-	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein	NA|493aa|up_1|NC_012917.1_3670228_3671707_-	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|168aa|up_0|NC_012917.1_3671739_3672243_-	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2	cas10|811aa|down_0|NC_012917.1_3673655_3676088_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|128aa|down_1|NC_012917.1_3676112_3676496_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|252aa|down_2|NC_012917.1_3676508_3677264_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|327aa|down_3|NC_012917.1_3677266_3678247_+	NA	csm5gr7|563aa|down_4|NC_012917.1_3678243_3679932_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas6|308aa|down_5|NC_012917.1_3679928_3680852_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	PD-DExK|251aa|down_6|NC_012917.1_3680903_3681656_-	NA	NA|63aa|down_7|NC_012917.1_3682488_3682677_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|164aa|down_8|NC_012917.1_3683109_3683601_+	pfam09904, HTH_43, Winged helix-turn helix	NA|195aa|down_9|NC_012917.1_3683593_3684178_+	PRK10347, PRK10347, putative adenosine monophosphate-protein transferase Fic
GCF_000023605.1_ASM2360v1	NC_012917	Pectobacterium carotovorum subsp. carotovorum PC1, complete genome	5	3681990-3682376	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	Type III-B,Type III-A,Type III-C,Type III-D	GTCCTTACGGACGCTCCCTGACTGAAGGGATTAAGAC,GTCCTTACGGACGCTCCCTGACTGAAGGGATTAAGACT,GTCCTTACGGACGCTCCCTGACTGAAGGGATTAAGAC	37,38,37	0	0	NA	NA	NA:NA:NA	4,5,5	5	TypeIII-B,TypeIII-A,TypeIII-C,TypeIII-D	csa3,DinG,DEDDh,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,PD-DExK	csm4gr5|327aa|up_3|NC_012917.1_3677266_3678247_+,PD-DExK|251aa|up_0|NC_012917.1_3680903_3681656_-,NA|54aa|down_3|NC_012917.1_3684531_3684693_-,NA|89aa|down_8|NC_012917.1_3688764_3689031_-,NA|65aa|down_9|NC_012917.1_3689027_3689222_-	NA|144aa|up_9|NC_012917.1_3669791_3670223_-	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein	NA|493aa|up_8|NC_012917.1_3670228_3671707_-	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|168aa|up_7|NC_012917.1_3671739_3672243_-	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2	cas10|811aa|up_6|NC_012917.1_3673655_3676088_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|128aa|up_5|NC_012917.1_3676112_3676496_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|252aa|up_4|NC_012917.1_3676508_3677264_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|327aa|up_3|NC_012917.1_3677266_3678247_+	NA	csm5gr7|563aa|up_2|NC_012917.1_3678243_3679932_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	cas6|308aa|up_1|NC_012917.1_3679928_3680852_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	PD-DExK|251aa|up_0|NC_012917.1_3680903_3681656_-	NA	NA|63aa|down_0|NC_012917.1_3682488_3682677_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|164aa|down_1|NC_012917.1_3683109_3683601_+	pfam09904, HTH_43, Winged helix-turn helix	NA|195aa|down_2|NC_012917.1_3683593_3684178_+	PRK10347, PRK10347, putative adenosine monophosphate-protein transferase Fic	NA|54aa|down_3|NC_012917.1_3684531_3684693_-	NA	NA|164aa|down_4|NC_012917.1_3684839_3685331_+	pfam09904, HTH_43, Winged helix-turn helix	NA|195aa|down_5|NC_012917.1_3685323_3685908_+	PRK10347, PRK10347, putative adenosine monophosphate-protein transferase Fic	NA|776aa|down_6|NC_012917.1_3686088_3688416_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|114aa|down_7|NC_012917.1_3688426_3688768_-	pfam17345, DUF5375, Family of unknown function (DUF5375)	NA|89aa|down_8|NC_012917.1_3688764_3689031_-	NA	NA|65aa|down_9|NC_012917.1_3689027_3689222_-	NA
