assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000023805.1_ASM2380v1	NC_017354	Helicobacter pylori 52, complete genome	1	134779-134876	1	CRISPRCasFinder	no		cas3,cas2,DEDDh	Orphan	CTTTCTTGTTCTAACTCTATCTCACTCTTATTTGC	35	1	1	134814-134841	NC_017354.1_134688-134715	NA	1	1	Orphan	cas3,cas2,DEDDh	NA|99aa|up_4|NC_017354.1_126843_127140_+,NA|44aa|down_1|NC_017354.1_138005_138137_+,NA|42aa|down_7|NC_017354.1_142355_142481_+,NA|290aa|down_9|NC_017354.1_143488_144358_+	NA|307aa|up_9|NC_017354.1_121492_122413_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|621aa|up_8|NC_017354.1_122666_124529_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|192aa|up_7|NC_017354.1_124559_125135_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_6|NC_017354.1_125134_125965_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_5|NC_017354.1_126184_126823_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_4|NC_017354.1_126843_127140_+	NA	NA|629aa|up_3|NC_017354.1_127164_129051_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_2|NC_017354.1_129110_130655_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_1|NC_017354.1_130820_133031_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|309aa|up_0|NC_017354.1_133023_133950_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|813aa|down_0|NC_017354.1_135380_137819_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|44aa|down_1|NC_017354.1_138005_138137_+	NA	NA|613aa|down_2|NC_017354.1_138177_140016_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_3|NC_017354.1_140012_140624_+	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3	NA|65aa|down_4|NC_017354.1_140604_140799_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_5|NC_017354.1_140893_141244_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_6|NC_017354.1_141443_142304_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|42aa|down_7|NC_017354.1_142355_142481_+	NA	NA|142aa|down_8|NC_017354.1_142659_143085_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|290aa|down_9|NC_017354.1_143488_144358_+	NA
GCF_000023805.1_ASM2380v1	NC_017354	Helicobacter pylori 52, complete genome	2	351504-351613	2	CRISPRCasFinder	no		cas3,cas2,DEDDh	Orphan	AGGCTCTCTAGCGTTACTGAAGAGAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,DEDDh	NA|102aa|up_0|NC_017354.1_350815_351121_+,NA|89aa|down_1|NC_017354.1_352082_352349_+,NA|23aa|down_2|NC_017354.1_352360_352429_+,NA|262aa|down_3|NC_017354.1_353024_353810_+,NA|280aa|down_4|NC_017354.1_354181_355021_+	NA|298aa|up_9|NC_017354.1_343436_344330_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NC_017354.1_344326_344869_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NC_017354.1_344801_345740_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NC_017354.1_345736_346519_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NC_017354.1_346766_347759_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NC_017354.1_347777_348584_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NC_017354.1_348580_348814_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_2|NC_017354.1_348825_349626_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NC_017354.1_349622_350027_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|102aa|up_0|NC_017354.1_350815_351121_+	NA	NA|125aa|down_0|NC_017354.1_351720_352095_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|89aa|down_1|NC_017354.1_352082_352349_+	NA	NA|23aa|down_2|NC_017354.1_352360_352429_+	NA	NA|262aa|down_3|NC_017354.1_353024_353810_+	NA	NA|280aa|down_4|NC_017354.1_354181_355021_+	NA	NA|299aa|down_5|NC_017354.1_355014_355911_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_6|NC_017354.1_355910_357461_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_7|NC_017354.1_357469_359086_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_8|NC_017354.1_359344_360013_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_9|NC_017354.1_360056_361760_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
GCF_000023805.1_ASM2380v1	NC_017354	Helicobacter pylori 52, complete genome	3	876740-876836	3	CRISPRCasFinder	no		cas3,cas2,DEDDh	Orphan	TTAAAAATGGGGTTTTTAACTTTATTTT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,DEDDh	NA|116aa|up_8|NC_017354.1_867272_867620_-,NA|39aa|down_0|NC_017354.1_876977_877094_-,NA|95aa|down_6|NC_017354.1_883241_883526_+,NA|131aa|down_7|NC_017354.1_883631_884024_+	NA|482aa|up_9|NC_017354.1_865598_867044_-	TIGR00414, Serine--tRNA_ligase, seryl-tRNA synthetase	NA|116aa|up_8|NC_017354.1_867272_867620_-	NA	NA|285aa|up_7|NC_017354.1_867791_868646_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|331aa|up_6|NC_017354.1_868719_869712_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|303aa|up_5|NC_017354.1_869708_870617_-	COG1159, Era, GTPase [General function prediction only]	NA|444aa|up_4|NC_017354.1_870613_871945_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|181aa|up_3|NC_017354.1_871944_872487_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|151aa|up_2|NC_017354.1_872490_872943_-	TIGR00158, 50S_ribosomal_protein_L9, ribosomal protein L9	NA|697aa|up_1|NC_017354.1_873002_875093_-	COG3586, COG3586, Uncharacterized conserved protein [Function unknown]	NA|482aa|up_0|NC_017354.1_875231_876677_+	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|39aa|down_0|NC_017354.1_876977_877094_-	NA	NA|255aa|down_1|NC_017354.1_877423_878188_-	TIGR00036, 4-hydroxy-tetrahydrodipicolinate_reductase, 4-hydroxy-tetrahydrodipicolinate reductase	NA|460aa|down_2|NC_017354.1_878210_879590_-	TIGR00387, Glycolate_oxidase_subunit_glcD	NA|450aa|down_3|NC_017354.1_879591_880941_-	pfam15436, PGBA_N, Plasminogen-binding protein pgbA N-terminal	NA|213aa|down_4|NC_017354.1_880951_881590_-	TIGR00052, GDP-mannose_pyrophosphatase_NudK, nudix-type nucleoside diphosphatase, YffH/AdpP family	NA|404aa|down_5|NC_017354.1_881589_882801_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|95aa|down_6|NC_017354.1_883241_883526_+	NA	NA|131aa|down_7|NC_017354.1_883631_884024_+	NA	NA|774aa|down_8|NC_017354.1_884118_886440_-	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|375aa|down_9|NC_017354.1_886452_887577_-	TIGR00663, DNA_polymerase_III_subunit_beta, DNA polymerase III, beta subunit
