The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	3018755	448678	457975	3018755		Prochlorococcus_phage(50.0%)	8	NA	NA
WP_012809822.1|448678_449971_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	36.2	3.9e-23
WP_012809823.1|449997_450717_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.5	9.4e-43
WP_012809824.1|450713_450974_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_012809825.1|450970_451651_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_012809826.1|451643_453878_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	42.9	7.0e-161
WP_012809827.1|453898_455341_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.3	9.7e-55
WP_012809828.1|455344_456373_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.9	8.1e-64
WP_012809829.1|456406_457975_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.2	5.7e-77
>prophage 2
NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	3018755	555534	601783	3018755	transposase	Enterobacteria_phage(16.67%)	33	NA	NA
WP_012809615.1|555534_556839_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_012809923.1|557033_557660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012809924.1|557678_558173_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012809926.1|558667_559867_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012809928.1|560716_561532_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	48.6	7.9e-62
WP_012809930.1|566338_567253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012809931.1|567537_568434_+	cytochrome c oxidase subunit II	NA	NA	NA	NA	NA
WP_012809932.1|568446_570420_+	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA	NA
WP_012809933.1|570421_571030_+	cytochrome (ubi)quinol oxidase subunit III	NA	NA	NA	NA	NA
WP_012809934.1|571026_571350_+	cytochrome C oxidase subunit IV family protein	NA	NA	NA	NA	NA
WP_148213721.1|571448_573095_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_012809936.1|573067_573763_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012809937.1|573959_575636_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_081442604.1|575857_576010_-	chlorite dismutase family protein	NA	NA	NA	NA	NA
WP_012809938.1|576582_577521_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_041707247.1|577671_579372_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_012809940.1|579965_581378_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_012809941.1|581941_583141_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_148213818.1|583289_584072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041707255.1|584458_586564_+	diguanylate cyclase	NA	A0A2K8I9Y5	Pseudomonas_phage	37.5	1.3e-07
WP_012809944.1|586560_587859_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_012809945.1|589477_589915_+	universal stress protein	NA	NA	NA	NA	NA
WP_012809946.1|590065_591184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012809947.1|591196_591481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148213722.1|591720_592425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012809949.1|592579_593545_+	NYN domain-containing protein	NA	A0A0K2CNZ2	Brevibacillus_phage	53.4	6.9e-73
WP_081442605.1|595669_596080_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012809951.1|596034_596505_+	VOC family protein	NA	NA	NA	NA	NA
WP_012809952.1|596577_597870_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	55.8	7.0e-129
WP_012809954.1|598328_598823_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_012809955.1|599137_599956_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	47.1	2.0e-60
WP_148213723.1|600012_600357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012809957.1|600664_601783_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1P8DJG9	Virus_Rctr71	37.6	1.1e-48
>prophage 3
NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	3018755	1128611	1137914	3018755	integrase	Brevibacillus_phage(25.0%)	15	1127453:1127466	1137013:1137026
1127453:1127466	attL	TTCGTCATGCTGTT	NA	NA	NA	NA
WP_012810440.1|1128611_1130045_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.3	5.1e-40
WP_081442614.1|1130842_1131910_-|integrase	site-specific integrase	integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	29.8	5.9e-33
WP_041707351.1|1132040_1132508_-	ImmA/IrrE family metallo-endopeptidase	NA	I3VYZ2	Thermoanaerobacterium_phage	32.2	1.9e-07
WP_012810443.1|1132531_1133152_-	helix-turn-helix transcriptional regulator	NA	O48389	Streptococcus_phage	33.6	1.8e-05
WP_169304843.1|1133138_1133540_+	helix-turn-helix domain-containing protein	NA	S6BA02	Thermus_phage	50.7	2.4e-11
WP_081442616.1|1133514_1133721_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012810445.1|1133865_1134102_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012810446.1|1134106_1134355_-	helix-turn-helix transcriptional regulator	NA	S5MA03	Brevibacillus_phage	42.4	6.4e-07
WP_041707960.1|1134446_1134662_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012810448.1|1134680_1135031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012810449.1|1135036_1135225_-	hypothetical protein	NA	S5MUK4	Brevibacillus_phage	63.6	8.5e-12
WP_169304844.1|1135351_1135537_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_012810451.1|1135793_1136033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810452.1|1136117_1137050_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
1137013:1137026	attR	AACAGCATGACGAA	NA	NA	NA	NA
WP_012810453.1|1137086_1137914_+	hypothetical protein	NA	A0A2K9V306	Faecalibacterium_phage	31.3	1.9e-15
>prophage 4
NC_013205	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446, complete sequence	3018755	1516315	1647463	3018755	transposase,coat,tRNA,integrase,protease	Enterobacteria_phage(14.81%)	109	1544387:1544403	1555969:1555985
WP_012810801.1|1516315_1517095_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_012810802.1|1517094_1517298_+	YlzJ-like family protein	NA	NA	NA	NA	NA
WP_012810803.1|1517363_1519793_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	49.4	7.8e-89
WP_012810804.1|1519855_1520437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041707413.1|1520478_1520829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041707414.1|1520979_1522017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810807.1|1522041_1522812_+	DUF3388 domain-containing protein	NA	NA	NA	NA	NA
WP_012810808.1|1522841_1523780_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_008340000.1|1523825_1524320_+	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_012810809.1|1524362_1524944_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_049763307.1|1524957_1526271_+	competence/damage-inducible protein A	NA	B5TK85	Pseudomonas_phage	40.6	6.6e-18
WP_041707415.1|1526275_1527856_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	39.3	1.1e-67
WP_012810812.1|1528086_1529154_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	70.6	1.1e-127
WP_041708074.1|1529122_1529818_+	regulatory protein RecX	NA	NA	NA	NA	NA
WP_012810814.1|1529949_1531497_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_008340016.1|1531662_1531923_+	stage V sporulation protein S	NA	J9PTX7	Bacillus_phage	41.2	3.2e-09
WP_012810815.1|1531948_1532896_+	dipeptidase	NA	NA	NA	NA	NA
WP_012810816.1|1533175_1533712_+|coat	outer spore coat protein CotE	coat	NA	NA	NA	NA
WP_012810817.1|1533774_1534851_+	YheC/YheD family protein	NA	NA	NA	NA	NA
WP_012810818.1|1534869_1535982_+	YheC/YheD family protein	NA	NA	NA	NA	NA
WP_012810819.1|1536010_1537474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041707416.1|1537500_1538622_+	YheC/YheD family protein	NA	NA	NA	NA	NA
WP_012810821.1|1538618_1538867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012810822.1|1538969_1540463_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_012810823.1|1540462_1540915_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_012810824.1|1540927_1543531_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	26.4	1.4e-32
WP_012810825.1|1543530_1545399_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.0	1.8e-53
1544387:1544403	attL	CGGCGCTGGTCGATCCG	NA	NA	NA	NA
WP_012810826.1|1545395_1546196_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012810827.1|1546192_1547194_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_012810828.1|1547195_1547456_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_081442628.1|1548051_1548441_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2I7SC08	Paenibacillus_phage	46.5	3.9e-27
WP_012810830.1|1550269_1550677_+	DUF669 domain-containing protein	NA	NA	NA	NA	NA
WP_012810831.1|1550679_1551087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810833.1|1551461_1551659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041707247.1|1551755_1553456_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_012810834.1|1553646_1554042_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0K2CYQ8	Paenibacillus_phage	40.8	2.2e-17
WP_012810835.1|1554381_1555665_+	RRXRR domain-containing protein	NA	A0A1D8KU48	Synechococcus_phage	47.2	9.3e-09
WP_012810836.1|1555841_1556564_+	DUF3820 family protein	NA	A0A2C9CXK1	Yersinia_phage	28.9	1.6e-18
1555969:1555985	attR	CGGCGCTGGTCGATCCG	NA	NA	NA	NA
WP_012810837.1|1556669_1557293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810838.1|1557310_1557826_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_148213751.1|1558234_1558444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810839.1|1559138_1560563_+	peptidase C39	NA	NA	NA	NA	NA
WP_012810840.1|1560565_1561777_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_169304846.1|1561836_1562478_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.6	2.8e-30
WP_148213848.1|1562482_1563640_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_041707421.1|1564249_1564552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049763309.1|1564621_1565437_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	48.6	7.9e-62
WP_041707247.1|1566101_1567802_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_012809566.1|1568000_1569218_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	50.3	1.6e-98
WP_012810845.1|1570939_1572157_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	50.3	1.6e-98
WP_169304847.1|1572539_1573361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810847.1|1573513_1574779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810848.1|1574842_1575232_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_012810849.1|1575864_1576152_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012810850.1|1576163_1576979_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	27.2	6.1e-14
WP_169304848.1|1577150_1577396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012809947.1|1577408_1577693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810851.1|1577873_1579097_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	65.9	3.4e-149
WP_012810852.1|1579369_1580599_+	MFS transporter	NA	NA	NA	NA	NA
WP_012810854.1|1581409_1581724_-	YolD-like family protein	NA	NA	NA	NA	NA
WP_081442631.1|1582601_1583264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810856.1|1583253_1584489_+	MFS transporter	NA	NA	NA	NA	NA
WP_012810857.1|1584475_1585642_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_012809566.1|1586416_1587634_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	50.3	1.6e-98
WP_081442632.1|1587889_1589131_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_081442633.1|1589493_1589817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810858.1|1590029_1591679_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_012810859.1|1592095_1592320_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_012810860.1|1592433_1593366_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012810845.1|1594971_1596189_-|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	50.3	1.6e-98
WP_012810863.1|1596299_1597439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810864.1|1599222_1600167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810865.1|1600345_1601419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169304849.1|1601614_1601971_+	VOC family protein	NA	NA	NA	NA	NA
WP_081442663.1|1602275_1602551_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_148213756.1|1602842_1603631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169304850.1|1603658_1604279_-	glucosaminidase domain-containing protein	NA	NA	NA	NA	NA
WP_041708090.1|1604808_1605729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810870.1|1605807_1605996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810871.1|1606369_1607593_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	49.7	5.5e-51
WP_012810872.1|1608000_1612212_+	DUF4011 domain-containing protein	NA	NA	NA	NA	NA
WP_012810873.1|1612497_1614174_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_012810874.1|1615874_1617116_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	33.3	1.2e-48
WP_012809928.1|1617112_1617928_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	48.6	7.9e-62
WP_012810875.1|1619434_1620877_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_049763340.1|1621062_1622529_+	spore germination protein	NA	NA	NA	NA	NA
WP_012810877.1|1622525_1623698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810878.1|1623694_1623940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810879.1|1623943_1625050_+	GerAB/ArcD/ProY family transporter	NA	NA	NA	NA	NA
WP_012810880.1|1625116_1626616_+	spore germination protein	NA	NA	NA	NA	NA
WP_012810881.1|1626695_1627709_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	45.7	8.0e-80
WP_012810882.1|1627716_1629297_-	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_012810883.1|1629517_1631014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810884.1|1631161_1632151_+	AAA family ATPase	NA	G3MAX6	Bacillus_virus	41.2	6.9e-52
WP_012810885.1|1632147_1632762_+	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
WP_012810886.1|1632742_1633369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810887.1|1633350_1633569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012810888.1|1633558_1634656_+	GTPase HflX	NA	NA	NA	NA	NA
WP_012810889.1|1634658_1635927_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_174260455.1|1636018_1636381_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012810891.1|1636403_1637741_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_012810892.1|1637768_1638782_-	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	27.1	5.1e-18
WP_148213758.1|1638954_1640481_+	UxaA family hydrolase	NA	NA	NA	NA	NA
WP_012810894.1|1640503_1641316_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA	NA
WP_012810895.1|1641347_1642784_+	tagaturonate reductase	NA	NA	NA	NA	NA
WP_041707434.1|1642934_1644332_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_012810897.1|1644420_1645029_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	59.4	9.8e-17
WP_012810898.1|1645111_1645903_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012810899.1|1646068_1647463_+|tRNA	glycine--tRNA ligase	tRNA	A0A2K9L2H2	Tupanvirus	27.7	1.0e-40
>prophage 1
NC_013206	Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI01, complete sequence	91726	46017	52326	91726		Wolbachia_phage(20.0%)	10	NA	NA
WP_015759735.1|46017_46461_-	DNA repair protein RadC	NA	A0A1B2LRS6	Wolbachia_phage	36.1	3.8e-10
WP_015759736.1|46543_47719_-	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	29.3	5.7e-05
WP_015759737.1|47715_48027_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_015759738.1|48115_48382_-	DUF4258 domain-containing protein	NA	NA	NA	NA	NA
WP_015759739.1|48359_48524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015759740.1|48527_50072_-	AAA family ATPase	NA	A0A0C5AN14	Bacteriophage	24.6	2.0e-26
WP_008338747.1|50187_50463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_143232670.1|50522_50789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015759741.1|50972_51443_-	single-stranded DNA-binding protein	NA	S5MNH0	Brevibacillus_phage	48.4	1.4e-31
WP_015759742.1|51468_52326_-	hypothetical protein	NA	E5DV80	Deep-sea_thermophilic_phage	50.9	6.7e-03
