assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	1	11834-12306	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Orphan	GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC,GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC,GTTGCAAACAAAAAGCCCCGTAAGGGGATTGAAAC	35,35,35	0	0	NA	NA	III-A:III-A:III-A	5,6,6	6	Orphan	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA,NA|74aa|down_0|NC_013946.1_12400_12622_+,NA|253aa|down_2|NC_013946.1_13537_14296_-,NA|158aa|down_3|NC_013946.1_14321_14795_+,NA|227aa|down_4|NC_013946.1_14804_15485_+,NA|62aa|down_6|NC_013946.1_17644_17830_+	NA|362aa|up_9|NC_013946.1_1861_2947_+	PRK14945, PRK14945, DNA polymerase III subunit beta; Provisional	NA|425aa|up_8|NC_013946.1_3113_4388_+	PRK00077, eno, enolase; Provisional	NA|475aa|up_7|NC_013946.1_4405_5830_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|381aa|up_6|NC_013946.1_5854_6997_+	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]	NA|64aa|up_5|NC_013946.1_7103_7295_+	PRK07334, PRK07334, threonine dehydratase; Provisional	NA|247aa|up_4|NC_013946.1_7291_8032_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|108aa|up_3|NC_013946.1_8086_8410_+	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|290aa|up_2|NC_013946.1_8406_9276_+	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|357aa|up_1|NC_013946.1_9281_10352_-	TIGR03858, LLM_2I7G, probable oxidoreductase, LLM family	NA|337aa|up_0|NC_013946.1_10410_11421_-	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|74aa|down_0|NC_013946.1_12400_12622_+	NA	NA|221aa|down_1|NC_013946.1_12796_13459_+	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	NA|253aa|down_2|NC_013946.1_13537_14296_-	NA	NA|158aa|down_3|NC_013946.1_14321_14795_+	NA	NA|227aa|down_4|NC_013946.1_14804_15485_+	NA	NA|620aa|down_5|NC_013946.1_15589_17449_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|62aa|down_6|NC_013946.1_17644_17830_+	NA	NA|208aa|down_7|NC_013946.1_17867_18491_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|120aa|down_8|NC_013946.1_18501_18861_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|226aa|down_9|NC_013946.1_18964_19642_+	TIGR02187, glutaredoxin-like_protein, Glutaredoxin-like domain protein
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	2	1434302-1434412	2	CRISPRCasFinder	no		cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Orphan	GGACGATTCCCTTCGGGACGGAACAGG	27	0	0	NA	NA	NA	1	1	Orphan	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA,NA	NA|250aa|up_9|NC_013946.1_1423087_1423837_-	PRK11171, PRK11171, (S)-ureidoglycine aminohydrolase	NA|449aa|up_8|NC_013946.1_1423833_1425180_-	PRK06189, PRK06189, allantoinase; Provisional	NA|416aa|up_7|NC_013946.1_1425189_1426437_-	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed	NA|119aa|up_6|NC_013946.1_1426548_1426905_-	COG2351, COG2351, Transthyretin-like protein [General function prediction only]	NA|439aa|up_5|NC_013946.1_1426914_1428231_-	pfam06181, Urate_ox_N, Urate oxidase N-terminal	NA|164aa|up_4|NC_013946.1_1428328_1428820_-	COG3195, COG3195, Uncharacterized protein conserved in bacteria [Function unknown]	NA|255aa|up_3|NC_013946.1_1428822_1429587_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|268aa|up_2|NC_013946.1_1429583_1430387_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|340aa|up_1|NC_013946.1_1430439_1431459_-	pfam09084, NMT1, NMT1/THI5 like	NA|441aa|up_0|NC_013946.1_1431645_1432968_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|301aa|down_0|NC_013946.1_1434468_1435371_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|227aa|down_1|NC_013946.1_1435355_1436036_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|346aa|down_2|NC_013946.1_1436023_1437061_+	PRK09283, PRK09283, porphobilinogen synthase	NA|373aa|down_3|NC_013946.1_1437191_1438310_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|242aa|down_4|NC_013946.1_1438306_1439032_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|353aa|down_5|NC_013946.1_1439028_1440087_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|261aa|down_6|NC_013946.1_1440083_1440866_+	pfam06778, Chlor_dismutase, Chlorite dismutase	NA|329aa|down_7|NC_013946.1_1440889_1441876_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|460aa|down_8|NC_013946.1_1441868_1443248_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|375aa|down_9|NC_013946.1_1443460_1444585_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	3	1502526-1503504	2,2,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas7,cas8c,cas5,cas3	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Type III-A,Type III-B,Type I-U,Type III-C,Type I-C,Type III-D	GTTTCAATCCTCACTCGAGCTATCGCCCGAGTGCAAC,GTTTCAATCCTCACTCGAGCTATCGCCCGAGTGCAAC,GTTTCAATCCTCACTCGAGCTATCGCCCGAGTGCAAC	37,37,37	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	13,12,12	13	TypeIII-A,TypeIII-B,TypeI-U,TypeIII-C,TypeI-C,TypeIII-D	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA|88aa|up_4|NC_013946.1_1498817_1499081_+,NA	NA|764aa|up_9|NC_013946.1_1493594_1495886_+	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	NA|227aa|up_8|NC_013946.1_1495897_1496578_+	sd00006, TPR, Tetratricopeptide repeat	NA|161aa|up_7|NC_013946.1_1496647_1497130_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|127aa|up_6|NC_013946.1_1497137_1497518_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|299aa|up_5|NC_013946.1_1497737_1498634_+	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic	NA|88aa|up_4|NC_013946.1_1498817_1499081_+	NA	NA|353aa|up_3|NC_013946.1_1499105_1500164_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|146aa|up_2|NC_013946.1_1500275_1500713_+	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|346aa|up_1|NC_013946.1_1500709_1501747_-	pfam07907, YibE_F, YibE/F-like protein	NA|185aa|up_0|NC_013946.1_1501847_1502402_+	pfam06930, DUF1282, Protein of unknown function (DUF1282)	cas2|100aa|down_0|NC_013946.1_1503705_1504005_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|340aa|down_1|NC_013946.1_1504007_1505027_-	cd09721, Cas1_I-C, CRISPR/Cas system-associated protein Cas1	cas4|219aa|down_2|NC_013946.1_1505023_1505680_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	csm6|355aa|down_3|NC_013946.1_1505716_1506781_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cmr6gr7|321aa|down_4|NC_013946.1_1506777_1507740_-	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cmr5gr11|131aa|down_5|NC_013946.1_1507726_1508119_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|246aa|down_6|NC_013946.1_1508121_1508859_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|377aa|down_7|NC_013946.1_1508848_1509979_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|489aa|down_8|NC_013946.1_1509971_1511438_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|408aa|down_9|NC_013946.1_1511434_1512658_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	4	1521736-1522565	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas7,cas8c,cas5,cas3,DEDDh	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Type III-A,Type III-B,Type III-D, Type I-U,Type I-U,Type I-C, or Type III-B?,Type III-C	GTTTCAATCCTCACTCGAGCTATCGCCCGAGTGCAAC,GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC,GTTGCACTCGGGCGATAGCTCGAGTGAGGATTGAAAC	37,37,37	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	11,11,11	11	TypeIII-A,TypeIII-B,TypeI-U,TypeI-U,TypeIII-C,TypeI-C,orTypeIII-B?,TypeIII-D	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA|50aa|up_0|NC_013946.1_1521336_1521486_-,NA|122aa|down_2|NC_013946.1_1524896_1525262_-	cmr4gr7|246aa|up_9|NC_013946.1_1508121_1508859_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|377aa|up_8|NC_013946.1_1508848_1509979_-	pfam09700, Cas_Cmr3, CRISPR-associated protein (Cas_Cmr3)	cas10|489aa|up_7|NC_013946.1_1509971_1511438_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|408aa|up_6|NC_013946.1_1511434_1512658_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas7|327aa|up_5|NC_013946.1_1512660_1513641_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|619aa|up_4|NC_013946.1_1513700_1515557_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|248aa|up_3|NC_013946.1_1515556_1516300_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|1079aa|up_2|NC_013946.1_1516311_1519548_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|531aa|up_1|NC_013946.1_1519698_1521291_-	sd00006, TPR, Tetratricopeptide repeat	NA|50aa|up_0|NC_013946.1_1521336_1521486_-	NA	NA|503aa|down_0|NC_013946.1_1522629_1524138_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|158aa|down_1|NC_013946.1_1524245_1524719_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|122aa|down_2|NC_013946.1_1524896_1525262_-	NA	NA|161aa|down_3|NC_013946.1_1525373_1525856_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|428aa|down_4|NC_013946.1_1525893_1527177_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|334aa|down_5|NC_013946.1_1527173_1528175_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|408aa|down_6|NC_013946.1_1528174_1529398_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1111aa|down_7|NC_013946.1_1529453_1532786_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|248aa|down_8|NC_013946.1_1532851_1533595_+	pfam12695, Abhydrolase_5, Alpha/beta hydrolase family	NA|477aa|down_9|NC_013946.1_1533641_1535072_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	5	1692797-1693122	4,4	CRT,PILER-CR	no		cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Orphan	GCCTCGTCTATCGCTCGAGGCCGGTAGG,GCCTCGTCTATCGCTCGAGGCCGGTAGG	28,28	0	0	NA	NA	NA:NA	4,3	4	Orphan	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA|182aa|up_6|NC_013946.1_1684394_1684940_+,NA|190aa|down_5|NC_013946.1_1699774_1700344_+	NA|304aa|up_9|NC_013946.1_1680708_1681620_-	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|625aa|up_8|NC_013946.1_1681623_1683498_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|255aa|up_7|NC_013946.1_1683643_1684408_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|182aa|up_6|NC_013946.1_1684394_1684940_+	NA	NA|157aa|up_5|NC_013946.1_1685067_1685538_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|312aa|up_4|NC_013946.1_1685667_1686603_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|439aa|up_3|NC_013946.1_1686656_1687973_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|356aa|up_2|NC_013946.1_1687969_1689037_+	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|871aa|up_1|NC_013946.1_1689116_1691729_+	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|347aa|up_0|NC_013946.1_1691717_1692758_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|590aa|down_0|NC_013946.1_1693200_1694970_-	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|361aa|down_1|NC_013946.1_1694983_1696066_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|323aa|down_2|NC_013946.1_1696070_1697039_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|579aa|down_3|NC_013946.1_1697076_1698813_-	cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|241aa|down_4|NC_013946.1_1698922_1699645_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|190aa|down_5|NC_013946.1_1699774_1700344_+	NA	NA|305aa|down_6|NC_013946.1_1700340_1701255_+	COG1452, Imp, Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]	NA|330aa|down_7|NC_013946.1_1701256_1702246_+	COG1934, COG1934, Uncharacterized protein conserved in bacteria [Function unknown]	NA|526aa|down_8|NC_013946.1_1702233_1703811_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|378aa|down_9|NC_013946.1_1703940_1705074_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	6	2791976-2794471	5,5,5	PILER-CR,CRISPRCasFinder,CRT	no	cas7	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Unclear	GTTTCAATCCTCACTCGAGCTTTTGCCCGAGTGCAAC,GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAAC,GTTGCACTCGGGCAAAAGCTCGAGTGAGGATTGAAACN	37,37,38	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	34,34,34	34	Unclear	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA,NA	NA|384aa|up_9|NC_013946.1_2783394_2784546_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|182aa|up_8|NC_013946.1_2784631_2785177_+	PRK13948, PRK13948, shikimate kinase; Provisional	NA|351aa|up_7|NC_013946.1_2785157_2786210_+	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis	NA|368aa|up_6|NC_013946.1_2786193_2787297_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|150aa|up_5|NC_013946.1_2787406_2787856_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|310aa|up_4|NC_013946.1_2787859_2788789_-	PRK14122, PRK14122, tRNA pseudouridine synthase B; Provisional	NA|269aa|up_3|NC_013946.1_2788853_2789660_+	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|293aa|up_2|NC_013946.1_2789702_2790581_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|177aa|up_1|NC_013946.1_2790486_2791017_+	TIGR01203, Hypoxanthine-guanine_phosphoribosyltransferase, hypoxanthine phosphoribosyltransferase	NA|226aa|up_0|NC_013946.1_2791088_2791766_+	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|358aa|down_0|NC_013946.1_2795917_2796991_+	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional	NA|426aa|down_1|NC_013946.1_2797005_2798283_+	PRK11274, glcF, glycolate oxidase subunit GlcF	NA|118aa|down_2|NC_013946.1_2798305_2798659_+	pfam13660, DUF4147, Domain of unknown function (DUF4147)	NA|144aa|down_3|NC_013946.1_2798638_2799070_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|132aa|down_4|NC_013946.1_2799192_2799588_-	pfam13592, HTH_33, Winged helix-turn helix	NA|318aa|down_5|NC_013946.1_2799711_2800665_+	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|230aa|down_6|NC_013946.1_2800694_2801384_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|228aa|down_7|NC_013946.1_2801387_2802071_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|558aa|down_8|NC_013946.1_2802070_2803744_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|390aa|down_9|NC_013946.1_2803804_2804974_-	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	7	2814315-2814466	6	CRISPRCasFinder	no		cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Orphan	GGTTACCGGTACGACCGGTAACC	23	0	0	NA	NA	NA	2	2	Orphan	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA|152aa|up_0|NC_013946.1_2811155_2811611_+,NA|189aa|down_1|NC_013946.1_2814912_2815479_+,NA|128aa|down_2|NC_013946.1_2815465_2815849_+,NA|86aa|down_3|NC_013946.1_2816217_2816475_+,NA|96aa|down_9|NC_013946.1_2820799_2821087_-	NA|558aa|up_9|NC_013946.1_2802070_2803744_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|390aa|up_8|NC_013946.1_2803804_2804974_-	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed	NA|262aa|up_7|NC_013946.1_2804987_2805773_-	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|148aa|up_6|NC_013946.1_2805769_2806213_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|321aa|up_5|NC_013946.1_2806250_2807213_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|251aa|up_4|NC_013946.1_2807420_2808173_-	pfam03331, LpxC, UDP-3-O-acyl N-acetylglycosamine deacetylase	NA|331aa|up_3|NC_013946.1_2808185_2809178_-	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional	NA|349aa|up_2|NC_013946.1_2809277_2810324_-	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional	NA|53aa|up_1|NC_013946.1_2810986_2811145_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|152aa|up_0|NC_013946.1_2811155_2811611_+	NA	NA|105aa|down_0|NC_013946.1_2814608_2814923_+	pfam04223, CitF, Citrate lyase, alpha subunit (CitF)	NA|189aa|down_1|NC_013946.1_2814912_2815479_+	NA	NA|128aa|down_2|NC_013946.1_2815465_2815849_+	NA	NA|86aa|down_3|NC_013946.1_2816217_2816475_+	NA	NA|388aa|down_4|NC_013946.1_2816452_2817616_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|251aa|down_5|NC_013946.1_2817859_2818612_+	cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like 	NA|343aa|down_6|NC_013946.1_2818652_2819681_+	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family	NA|110aa|down_7|NC_013946.1_2819797_2820127_-	pfam11572, DUF3234, Protein of unknown function (DUF3234)	NA|191aa|down_8|NC_013946.1_2820183_2820756_+	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|96aa|down_9|NC_013946.1_2820799_2821087_-	NA
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	8	3049068-3053623	7,6,6	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Type I-E	CGGTTCATCCCCGCGGGTGCGGGGAATAC,CGGTTCATCCCCGCGGGTGCGGGGAATAC,CGGTTCATCCCCGCGGGTGCGGGGAATAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	74,74,17	74	TypeI-E	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA|139aa|up_4|NC_013946.1_3045532_3045949_+,NA|75aa|up_0|NC_013946.1_3048824_3049049_+,NA|142aa|down_8|NC_013946.1_3060068_3060494_-	NA|294aa|up_9|NC_013946.1_3041126_3042008_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|353aa|up_8|NC_013946.1_3042174_3043233_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|205aa|up_7|NC_013946.1_3043239_3043854_-	cd16322, TTHA1623-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1623 and related proteins; MBL-fold metallo hydrolase domain	NA|229aa|up_6|NC_013946.1_3043889_3044576_-	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|196aa|up_5|NC_013946.1_3044619_3045207_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|up_4|NC_013946.1_3045532_3045949_+	NA	NA|126aa|up_3|NC_013946.1_3045979_3046357_+	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|309aa|up_2|NC_013946.1_3046383_3047310_+	COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]	NA|389aa|up_1|NC_013946.1_3047315_3048482_-	PRK07366, PRK07366, LL-diaminopimelate aminotransferase	NA|75aa|up_0|NC_013946.1_3048824_3049049_+	NA	cas2|127aa|down_0|NC_013946.1_3053643_3054024_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|321aa|down_1|NC_013946.1_3053977_3054940_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|211aa|down_2|NC_013946.1_3054942_3055575_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|232aa|down_3|NC_013946.1_3055549_3056245_-	pfam09704, Cas_Cas5d, CRISPR-associated protein (Cas_Cas5)	cas7|391aa|down_4|NC_013946.1_3056246_3057419_-	pfam09344, Cas_CT1975, CT1975-like protein	NA|166aa|down_5|NC_013946.1_3057428_3057926_-	pfam11159, DUF2939, Protein of unknown function (DUF2939)	cse2gr11|203aa|down_6|NC_013946.1_3057915_3058524_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|517aa|down_7|NC_013946.1_3058504_3060055_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	NA|142aa|down_8|NC_013946.1_3060068_3060494_-	NA	cas3|900aa|down_9|NC_013946.1_3060490_3063190_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
GCF_000024425.1_ASM2442v1	NC_013946	Meiothermus ruber DSM 1279, complete sequence	9	3070594-3070740	7	CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	Type I-E	CCGTCCCGAAGGGGATCGTCC	21	0	0	NA	NA	NA	3	3	TypeI-E	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,WYL,TnpB_regular.1,cas3,csa3,DEDDh,cas2,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas7,cas8c,cas5,cas14j,Cas9_archaeal,cas6e,cse2gr11,cas8e	NA|142aa|up_6|NC_013946.1_3060068_3060494_-,NA|142aa|up_1|NC_013946.1_3067224_3067650_+,NA|299aa|down_1|NC_013946.1_3071416_3072313_-,NA|201aa|down_3|NC_013946.1_3074161_3074764_+,NA|138aa|down_4|NC_013946.1_3074824_3075238_+,NA|137aa|down_5|NC_013946.1_3075248_3075659_+,NA|92aa|down_9|NC_013946.1_3079110_3079386_-	NA|166aa|up_9|NC_013946.1_3057428_3057926_-	pfam11159, DUF2939, Protein of unknown function (DUF2939)	cse2gr11|203aa|up_8|NC_013946.1_3057915_3058524_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|517aa|up_7|NC_013946.1_3058504_3060055_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	NA|142aa|up_6|NC_013946.1_3060068_3060494_-	NA	cas3|900aa|up_5|NC_013946.1_3060490_3063190_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	WYL|344aa|up_4|NC_013946.1_3063186_3064218_-	pfam13280, WYL, WYL domain	NA|290aa|up_3|NC_013946.1_3064642_3065512_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|409aa|up_2|NC_013946.1_3065738_3066965_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|142aa|up_1|NC_013946.1_3067224_3067650_+	NA	NA|409aa|up_0|NC_013946.1_3067786_3069013_+	cd00424, PolY, Y-family of DNA polymerases	NA|92aa|down_0|NC_013946.1_3071137_3071413_+	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|299aa|down_1|NC_013946.1_3071416_3072313_-	NA	NA|557aa|down_2|NC_013946.1_3072409_3074080_+	cd11356, AmyAc_Sucrose_phosphorylase-like_1, Alpha amylase catalytic domain found in sucrose phosphorylase-like proteins (also called sucrose glucosyltransferase, disaccharide glucosyltransferase, and sucrose-phosphate alpha-D glucosyltransferase)	NA|201aa|down_3|NC_013946.1_3074161_3074764_+	NA	NA|138aa|down_4|NC_013946.1_3074824_3075238_+	NA	NA|137aa|down_5|NC_013946.1_3075248_3075659_+	NA	NA|219aa|down_6|NC_013946.1_3075661_3076318_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|435aa|down_7|NC_013946.1_3076314_3077619_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|455aa|down_8|NC_013946.1_3077656_3079021_-	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|92aa|down_9|NC_013946.1_3079110_3079386_-	NA
