bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	3.1|777569|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	31	0	0	1	31	274257	274227	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	9e-09	50.7	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	274227-274257	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	3.1|777569|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.77	31	1	0	1	31	274202	274172	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	274172-274202	GGTAATGCAAGTTGGCGGGGCCCCAACACAG	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	3.1|777569|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.77	31	1	0	1	31	1667304	1667334	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	8e-08	47.5	1.0	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	1667304-1667334	CTGTGTTGGGGCCCCGCCAACTTCCATTGCC	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	150978	150954	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	150954-150978	GAATTTCGAAAAGAAATTCTACAGG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	151036	151012	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	151012-151036	GAATTTCGAAAAGAAATTCTACAGG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	274173	274149	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	274149-274173	GAATTTCGAAAAGAAATTCTACAGG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	274283	274259	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	274259-274283	GAATTTCGAAAAGAAATTCTACAGG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	612803	612779	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	612779-612803	GAATTTCGAAAAGAAATTCTACAGG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	735637	735661	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	735637-735661	CCTGTAGAATTTCTTTTCGAAATTC	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	826473	826497	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	826473-826497	CCTGTAGAATTTCTTTTCGAAATTC	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	1361514	1361490	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	1361490-1361514	GAATTTCGAAAAGAAATTCTACAGG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	1632908	1632932	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	1632908-1632932	CCTGTAGAATTTCTTTTCGAAATTC	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	1647463	1647439	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	1647439-1647463	GAATTTCGAAAAGAAATTCTACAGG	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	100.00	25	0	0	1	25	1988138	1988162	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-06	41.2	1.0	CCTGTAGAATTTCTTTTCGAAATTC	1988138-1988162	CCTGTAGAATTTCTTTTCGAAATTC	0
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.00	25	1	0	1	25	274228	274204	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-05	38.0	1.0	CCTGTAGAATTTCTTTTCGAAATTC	274204-274228	GAAATTCGAAAAGAAATTCTACAGG	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.00	25	1	0	1	25	953766	953790	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-05	38.0	1.0	CCTGTAGAATTTCTTTTCGAAATTC	953766-953790	CCTGTAGAATTTCTTTTAGAAATTC	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.00	25	1	0	1	25	1667159	1667183	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-05	38.0	1.0	CCTGTAGAATTTCTTTTCGAAATTC	1667159-1667183	CCTGTAGAATTTCTTTACGAAATTC	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	4.1|783036|25|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.00	25	1	0	1	25	1667392	1667416	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-05	38.0	1.0	CCTGTAGAATTTCTTTTCGAAATTC	1667392-1667416	CCTGTAGAATTTCTTTACGAAATTC	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	5.1|826424|34|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	97.06	34	1	0	1	34	1361622	1361589	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	4e-09	52.3	1.0	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT	1361589-1361622	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	6.1|1149990|11|NC_013450|PILER-CR	NC_013452.1	Staphylococcus aureus subsp. aureus ED98 plasmid pT181, complete sequence	90.91	11	1	0	1	11	1194	1204	no crispr array in hit genome!	0.30	15.8	1.0	ATACAAAAATG	1194-1204	ATAAAAAAATG	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	6.2|1150047|11|NC_013450|PILER-CR	NC_013452.1	Staphylococcus aureus subsp. aureus ED98 plasmid pT181, complete sequence	90.91	11	1	0	1	11	1194	1204	no crispr array in hit genome!	0.30	15.8	1.0	ATACAAAAATG	1194-1204	ATAAAAAAATG	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	7.1|1632858|33|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.97	33	1	0	1	33	151086	151054	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	151054-151086	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	7.1|1632858|33|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.97	33	1	0	1	33	1361622	1361590	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	1e-08	50.7	1.0	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA	1361590-1361622	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.77	31	1	0	1	31	790171	790201	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	790171-790201	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	96.77	31	1	0	1	31	790227	790257	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	8e-08	47.5	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	790227-790257	CACATTATTGTAAGCTGACTTTCCGTCAGCT	1
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	36973	37003	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	36973-37003	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	350627	350597	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	350597-350627	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	612867	612837	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	612837-612867	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	790283	790313	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	790283-790313	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	826736	826766	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	826736-826766	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	1051284	1051314	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1051284-1051314	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	1155479	1155449	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1155449-1155479	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	1361578	1361548	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1361548-1361578	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	1451502	1451532	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1451502-1451532	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	1647526	1647496	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1647496-1647526	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	1986790	1986820	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1986790-1986820	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	2331784	2331814	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2331784-2331814	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_013450	Staphylococcus aureus subsp. aureus ED98, complete sequence	10.1|2342584|31|NC_013450|CRISPRCasFinder	NC_013450.1	Staphylococcus aureus subsp. aureus ED98, complete sequence	93.55	31	2	0	1	31	2507746	2507776	389335-389436|736596-736678|777545-777623|783003-783093|826400-826481|1149944-1150101|1632832-1632916|2222253-2222333|2234574-2234659|2342559-2342639	7e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2507746-2507776	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
