assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000024845.1_ASM2484v1	NC_013502	Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence	1	24096-24759	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2	cas8u1,cas3,csb2gr5,csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1,cas14j,Cas14u_CAS-V,WYL	Type III-B,Type III-D,Type III-C,Type III-A	GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC,GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC,GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC	37,37,37	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|356aa|up_4|NC_013502.1_11169_12237_-,NA|1133aa|up_3|NC_013502.1_12208_15607_-,NA|345aa|down_7|NC_013502.1_33693_34728_+,NA|273aa|down_9|NC_013502.1_36562_37381_+	csb1gr7|411aa|up_9|NC_013502.1_4276_5509_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|348aa|up_8|NC_013502.1_6777_7821_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|164aa|up_7|NC_013502.1_7830_8322_+	cd18685, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|297aa|up_6|NC_013502.1_8637_9528_-	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|541aa|up_5|NC_013502.1_9541_11164_-	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|356aa|up_4|NC_013502.1_11169_12237_-	NA	NA|1133aa|up_3|NC_013502.1_12208_15607_-	NA	NA|898aa|up_2|NC_013502.1_15618_18312_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|911aa|up_1|NC_013502.1_18384_21117_-	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|475aa|up_0|NC_013502.1_22110_23535_-	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	csm5gr7|551aa|down_0|NC_013502.1_24945_26598_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|340aa|down_1|NC_013502.1_26616_27636_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|265aa|down_2|NC_013502.1_27632_28427_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|127aa|down_3|NC_013502.1_28443_28824_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|738aa|down_4|NC_013502.1_28853_31067_-	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csx1|302aa|down_5|NC_013502.1_31170_32076_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|59aa|down_6|NC_013502.1_33404_33581_+	pfam14020, DUF4236, Protein of unknown function (DUF4236)	NA|345aa|down_7|NC_013502.1_33693_34728_+	NA	NA|603aa|down_8|NC_013502.1_34746_36555_+	pfam09787, Golgin_A5, Golgin subfamily A member 5	NA|273aa|down_9|NC_013502.1_36562_37381_+	NA
GCF_000024845.1_ASM2484v1	NC_013502	Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence	2	32202-33116	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1	cas8u1,cas3,csb2gr5,csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1,cas14j,Cas14u_CAS-V,WYL	Type III-B,Type III-D,Type III-C,Type III-A	GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC,GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC,GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC	37,37,37	0	0	NA	NA	NA:NA:NA	11,11,7	11	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|1133aa|up_9|NC_013502.1_12208_15607_-,NA|345aa|down_1|NC_013502.1_33693_34728_+,NA|273aa|down_3|NC_013502.1_36562_37381_+,csx20|131aa|down_5|NC_013502.1_38645_39038_+,NA|133aa|down_6|NC_013502.1_39151_39550_+,NA|122aa|down_7|NC_013502.1_39553_39919_+	NA|1133aa|up_9|NC_013502.1_12208_15607_-	NA	NA|898aa|up_8|NC_013502.1_15618_18312_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|911aa|up_7|NC_013502.1_18384_21117_-	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|475aa|up_6|NC_013502.1_22110_23535_-	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	csm5gr7|551aa|up_5|NC_013502.1_24945_26598_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|340aa|up_4|NC_013502.1_26616_27636_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|265aa|up_3|NC_013502.1_27632_28427_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|127aa|up_2|NC_013502.1_28443_28824_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|738aa|up_1|NC_013502.1_28853_31067_-	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE	csx1|302aa|up_0|NC_013502.1_31170_32076_-	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|59aa|down_0|NC_013502.1_33404_33581_+	pfam14020, DUF4236, Protein of unknown function (DUF4236)	NA|345aa|down_1|NC_013502.1_33693_34728_+	NA	NA|603aa|down_2|NC_013502.1_34746_36555_+	pfam09787, Golgin_A5, Golgin subfamily A member 5	NA|273aa|down_3|NC_013502.1_36562_37381_+	NA	csx1|427aa|down_4|NC_013502.1_37384_38665_+	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	csx20|131aa|down_5|NC_013502.1_38645_39038_+	NA	NA|133aa|down_6|NC_013502.1_39151_39550_+	NA	NA|122aa|down_7|NC_013502.1_39553_39919_+	NA	csx1|395aa|down_8|NC_013502.1_39972_41157_+	cd09686, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|447aa|down_9|NC_013502.1_41163_42504_+	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1
GCF_000024845.1_ASM2484v1	NC_013502	Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence	3	48425-48538	3	CRISPRCasFinder	no	csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1	cas8u1,cas3,csb2gr5,csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1,cas14j,Cas14u_CAS-V,WYL	Type III-B,Type III-D,Type III-C,Type III-A	GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC	37	0	0	NA	NA	NA	1	1	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|122aa|up_9|NC_013502.1_39553_39919_+,NA|237aa|up_2|NC_013502.1_46429_47140_-,NA|125aa|down_0|NC_013502.1_48758_49133_-,NA|107aa|down_1|NC_013502.1_49188_49509_-,NA|182aa|down_6|NC_013502.1_54376_54922_-	NA|122aa|up_9|NC_013502.1_39553_39919_+	NA	csx1|395aa|up_8|NC_013502.1_39972_41157_+	cd09686, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|447aa|up_7|NC_013502.1_41163_42504_+	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cas6|326aa|up_6|NC_013502.1_42489_43467_-	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	NA|292aa|up_5|NC_013502.1_43548_44424_-	cd06257, DnaJ, DnaJ domain or J-domain	cas2|94aa|up_4|NC_013502.1_44447_44729_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|526aa|up_3|NC_013502.1_44729_46307_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|237aa|up_2|NC_013502.1_46429_47140_-	NA	NA|161aa|up_1|NC_013502.1_47136_47619_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|200aa|up_0|NC_013502.1_47621_48221_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|125aa|down_0|NC_013502.1_48758_49133_-	NA	NA|107aa|down_1|NC_013502.1_49188_49509_-	NA	NA|123aa|down_2|NC_013502.1_49786_50155_-	PRK06642, PRK06642, single-stranded DNA-binding protein; Provisional	NA|90aa|down_3|NC_013502.1_50162_50432_-	PRK12298, obgE, GTPase CgtA; Reviewed	NA|679aa|down_4|NC_013502.1_50619_52656_+	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|491aa|down_5|NC_013502.1_52673_54146_+	sd00006, TPR, Tetratricopeptide repeat	NA|182aa|down_6|NC_013502.1_54376_54922_-	NA	csx1|511aa|down_7|NC_013502.1_55798_57331_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|185aa|down_8|NC_013502.1_60560_61115_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|203aa|down_9|NC_013502.1_61285_61894_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type
GCF_000024845.1_ASM2484v1	NC_013502	Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence	4	55091-55603	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	csx1,csx20,cas6,cas2,cas1,cas14j	cas8u1,cas3,csb2gr5,csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1,cas14j,Cas14u_CAS-V,WYL	Unclear	GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC,GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC,GTCGTAATCCCCTTTTCATCGGGTCAAGT	37,37,29	0	0	NA	NA	NA:NA:NA	6,6,6	6	TypeV	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|237aa|up_9|NC_013502.1_46429_47140_-,NA|125aa|up_6|NC_013502.1_48758_49133_-,NA|107aa|up_5|NC_013502.1_49188_49509_-,NA|182aa|up_0|NC_013502.1_54376_54922_-,NA|116aa|down_6|NC_013502.1_69087_69435_+,NA|312aa|down_7|NC_013502.1_69956_70892_+,NA|179aa|down_8|NC_013502.1_71266_71803_+	NA|237aa|up_9|NC_013502.1_46429_47140_-	NA	NA|161aa|up_8|NC_013502.1_47136_47619_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|200aa|up_7|NC_013502.1_47621_48221_-	pfam04343, DUF488, Protein of unknown function, DUF488	NA|125aa|up_6|NC_013502.1_48758_49133_-	NA	NA|107aa|up_5|NC_013502.1_49188_49509_-	NA	NA|123aa|up_4|NC_013502.1_49786_50155_-	PRK06642, PRK06642, single-stranded DNA-binding protein; Provisional	NA|90aa|up_3|NC_013502.1_50162_50432_-	PRK12298, obgE, GTPase CgtA; Reviewed	NA|679aa|up_2|NC_013502.1_50619_52656_+	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|491aa|up_1|NC_013502.1_52673_54146_+	sd00006, TPR, Tetratricopeptide repeat	NA|182aa|up_0|NC_013502.1_54376_54922_-	NA	csx1|511aa|down_0|NC_013502.1_55798_57331_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|185aa|down_1|NC_013502.1_60560_61115_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|203aa|down_2|NC_013502.1_61285_61894_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|1244aa|down_3|NC_013502.1_61890_65622_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|201aa|down_4|NC_013502.1_66822_67425_-	cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	cas14j|377aa|down_5|NC_013502.1_67671_68802_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|down_6|NC_013502.1_69087_69435_+	NA	NA|312aa|down_7|NC_013502.1_69956_70892_+	NA	NA|179aa|down_8|NC_013502.1_71266_71803_+	NA	NA|101aa|down_9|NC_013502.1_71894_72197_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system
GCF_000024845.1_ASM2484v1	NC_013502	Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence	5	65829-66347	4,5	PILER-CR,CRISPRCasFinder	no	csx1,cas14j	cas8u1,cas3,csb2gr5,csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1,cas14j,Cas14u_CAS-V,WYL	Unclear	GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC,GTCGTAATCCCCTTTTCATCGGGTCAAGTCTTCGGAC	37,37	0	0	NA	NA	NA:NA	6,6	6	TypeV	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|107aa|up_9|NC_013502.1_49188_49509_-,NA|182aa|up_4|NC_013502.1_54376_54922_-,NA|116aa|down_2|NC_013502.1_69087_69435_+,NA|312aa|down_3|NC_013502.1_69956_70892_+,NA|179aa|down_4|NC_013502.1_71266_71803_+,NA|163aa|down_8|NC_013502.1_73132_73621_-	NA|107aa|up_9|NC_013502.1_49188_49509_-	NA	NA|123aa|up_8|NC_013502.1_49786_50155_-	PRK06642, PRK06642, single-stranded DNA-binding protein; Provisional	NA|90aa|up_7|NC_013502.1_50162_50432_-	PRK12298, obgE, GTPase CgtA; Reviewed	NA|679aa|up_6|NC_013502.1_50619_52656_+	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|491aa|up_5|NC_013502.1_52673_54146_+	sd00006, TPR, Tetratricopeptide repeat	NA|182aa|up_4|NC_013502.1_54376_54922_-	NA	csx1|511aa|up_3|NC_013502.1_55798_57331_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|185aa|up_2|NC_013502.1_60560_61115_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|203aa|up_1|NC_013502.1_61285_61894_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|1244aa|up_0|NC_013502.1_61890_65622_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|201aa|down_0|NC_013502.1_66822_67425_-	cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	cas14j|377aa|down_1|NC_013502.1_67671_68802_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|down_2|NC_013502.1_69087_69435_+	NA	NA|312aa|down_3|NC_013502.1_69956_70892_+	NA	NA|179aa|down_4|NC_013502.1_71266_71803_+	NA	NA|101aa|down_5|NC_013502.1_71894_72197_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|143aa|down_6|NC_013502.1_72171_72600_+	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs	NA|97aa|down_7|NC_013502.1_72824_73115_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|163aa|down_8|NC_013502.1_73132_73621_-	NA	NA|56aa|down_9|NC_013502.1_74000_74168_-	pfam14104, DUF4277, Domain of unknown function (DUF4277)
GCF_000024845.1_ASM2484v1	NC_013502	Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence	6	117088-118505	4,6,5	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1	cas8u1,cas3,csb2gr5,csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1,cas14j,Cas14u_CAS-V,WYL	Unclear	CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAAT,CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAAT,CCTTCAATGCTGCCGTAGCTA	36,36,21	0	0	NA	NA	NA:NA:NA	19,18,18	19	Unclear	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|127aa|up_9|NC_013502.1_102811_103192_+,NA|47aa|up_5|NC_013502.1_106099_106240_-,NA|415aa|up_4|NC_013502.1_106455_107700_-,NA|111aa|up_3|NC_013502.1_108473_108806_+,NA|235aa|up_1|NC_013502.1_115282_115987_-,NA|242aa|up_0|NC_013502.1_115991_116717_-,NA	NA|127aa|up_9|NC_013502.1_102811_103192_+	NA	NA|530aa|up_8|NC_013502.1_103452_105042_-	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|138aa|up_7|NC_013502.1_105373_105787_-	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs	NA|80aa|up_6|NC_013502.1_105804_106044_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|47aa|up_5|NC_013502.1_106099_106240_-	NA	NA|415aa|up_4|NC_013502.1_106455_107700_-	NA	NA|111aa|up_3|NC_013502.1_108473_108806_+	NA	NA|1533aa|up_2|NC_013502.1_108922_113521_-	pfam13401, AAA_22, AAA domain	NA|235aa|up_1|NC_013502.1_115282_115987_-	NA	NA|242aa|up_0|NC_013502.1_115991_116717_-	NA	cas2|97aa|down_0|NC_013502.1_122272_122563_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|554aa|down_1|NC_013502.1_122559_124221_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_000024845.1_ASM2484v1	NC_013502	Rhodothermus marinus DSM 4252 plasmid pRMAR01, complete sequence	7	119652-122080	5,6,7	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1	cas8u1,cas3,csb2gr5,csb1gr7,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,csx20,cas6,cas2,cas1,cas14j,Cas14u_CAS-V,WYL	Unclear	CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAAT,CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAAT,CCTTCAATGCTGCCGTAGCTATTTAGCTACGGAAAT	36,36,36	0	0	NA	NA	NA:NA:NA	33,32,32	33	Unclear	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|127aa|up_9|NC_013502.1_102811_103192_+,NA|47aa|up_5|NC_013502.1_106099_106240_-,NA|415aa|up_4|NC_013502.1_106455_107700_-,NA|111aa|up_3|NC_013502.1_108473_108806_+,NA|235aa|up_1|NC_013502.1_115282_115987_-,NA|242aa|up_0|NC_013502.1_115991_116717_-,NA	NA|127aa|up_9|NC_013502.1_102811_103192_+	NA	NA|530aa|up_8|NC_013502.1_103452_105042_-	cd07732, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|138aa|up_7|NC_013502.1_105373_105787_-	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs	NA|80aa|up_6|NC_013502.1_105804_106044_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|47aa|up_5|NC_013502.1_106099_106240_-	NA	NA|415aa|up_4|NC_013502.1_106455_107700_-	NA	NA|111aa|up_3|NC_013502.1_108473_108806_+	NA	NA|1533aa|up_2|NC_013502.1_108922_113521_-	pfam13401, AAA_22, AAA domain	NA|235aa|up_1|NC_013502.1_115282_115987_-	NA	NA|242aa|up_0|NC_013502.1_115991_116717_-	NA	cas2|97aa|down_0|NC_013502.1_122272_122563_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|554aa|down_1|NC_013502.1_122559_124221_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_000024845.1_ASM2484v1	NC_013501	Rhodothermus marinus DSM 4252, complete sequence	1	539686-544167	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG	Type I-E	GGTGTCCCCGCACCCGCGGGGATAGTCC,GGTGTCCCCGCACCCGCGGGGATAGTCCC,GGTGNCCCCGCACCCGCGGGGATAGTCC	28,29,28	0	0	NA	NA	NA:NA:NA	73,73,73	73	TypeI-E	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA,NA|850aa|down_1|NC_013501.1_545569_548119_+	NA|642aa|up_9|NC_013501.1_528116_530042_+	pfam07944, Glyco_hydro_127, Beta-L-arabinofuranosidase, GH127	DEDDh|168aa|up_8|NC_013501.1_530155_530659_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas3|869aa|up_7|NC_013501.1_530678_533285_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|520aa|up_6|NC_013501.1_533363_534923_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NC_013501.1_534919_535459_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|424aa|up_4|NC_013501.1_535506_536778_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|253aa|up_3|NC_013501.1_536777_537536_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|266aa|up_2|NC_013501.1_537525_538323_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|298aa|up_1|NC_013501.1_538340_539234_+	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1	cas2|143aa|up_0|NC_013501.1_539205_539634_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|163aa|down_0|NC_013501.1_544836_545325_-	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|850aa|down_1|NC_013501.1_545569_548119_+	NA	NA|415aa|down_2|NC_013501.1_548124_549369_-	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	NA|510aa|down_3|NC_013501.1_549382_550912_-	cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain	NA|352aa|down_4|NC_013501.1_550934_551990_-	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|114aa|down_5|NC_013501.1_552249_552591_+	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486)	NA|306aa|down_6|NC_013501.1_552687_553605_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|483aa|down_7|NC_013501.1_553624_555073_+	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like	NA|219aa|down_8|NC_013501.1_555076_555733_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|588aa|down_9|NC_013501.1_555729_557493_+	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)
GCF_000024845.1_ASM2484v1	NC_013501	Rhodothermus marinus DSM 4252, complete sequence	2	1013895-1013984	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG	Orphan	ATACAACGCACACCATCTGAAATC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA,NA	NA|67aa|up_9|NC_013501.1_1000528_1000729_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|416aa|up_8|NC_013501.1_1001278_1002526_+	COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]	NA|423aa|up_7|NC_013501.1_1002651_1003920_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|300aa|up_6|NC_013501.1_1003916_1004816_+	pfam00685, Sulfotransfer_1, Sulfotransferase domain	NA|429aa|up_5|NC_013501.1_1004823_1006110_+	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_013501.1_1006926_1008072_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|273aa|up_3|NC_013501.1_1008071_1008890_+	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|444aa|up_2|NC_013501.1_1008823_1010155_-	smart00633, Glyco_10, Glycosyl hydrolase family 10	NA|482aa|up_1|NC_013501.1_1010685_1012131_+	TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose phosphotransferase, WbaP	NA|462aa|up_0|NC_013501.1_1012171_1013557_+	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi	NA|574aa|down_0|NC_013501.1_1014096_1015818_+	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|620aa|down_1|NC_013501.1_1016106_1017966_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|352aa|down_2|NC_013501.1_1018090_1019146_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1030aa|down_3|NC_013501.1_1019160_1022250_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|437aa|down_4|NC_013501.1_1022246_1023557_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|180aa|down_5|NC_013501.1_1023839_1024379_-	pfam04931, DNA_pol_phi, DNA polymerase phi	NA|374aa|down_6|NC_013501.1_1024513_1025635_+	pfam00924, MS_channel, Mechanosensitive ion channel	NA|545aa|down_7|NC_013501.1_1025697_1027332_-	cd08015, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily	NA|115aa|down_8|NC_013501.1_1027297_1027642_-	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|130aa|down_9|NC_013501.1_1027638_1028028_-	PRK14222, PRK14222, fluoride efflux transporter CrcB
GCF_000024845.1_ASM2484v1	NC_013501	Rhodothermus marinus DSM 4252, complete sequence	3	1106185-1106266	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG	Orphan	GCGGAGACGGGCGCTGGCAACATCACGG	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|50aa|up_5|NC_013501.1_1101584_1101734_+,NA|52aa|up_4|NC_013501.1_1101788_1101944_+,NA|73aa|up_3|NC_013501.1_1102112_1102331_+,NA|52aa|down_0|NC_013501.1_1106903_1107059_-,NA|63aa|down_8|NC_013501.1_1118902_1119091_-	NA|462aa|up_9|NC_013501.1_1096250_1097636_+	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain	NA|194aa|up_8|NC_013501.1_1097680_1098262_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|318aa|up_7|NC_013501.1_1098499_1099453_+	TIGR04352, hypothetical_protein_imdm_1353, HprK-related kinase A	NA|677aa|up_6|NC_013501.1_1099449_1101480_+	cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type	NA|50aa|up_5|NC_013501.1_1101584_1101734_+	NA	NA|52aa|up_4|NC_013501.1_1101788_1101944_+	NA	NA|73aa|up_3|NC_013501.1_1102112_1102331_+	NA	NA|627aa|up_2|NC_013501.1_1102413_1104294_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|101aa|up_1|NC_013501.1_1104333_1104636_+	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD)	NA|259aa|up_0|NC_013501.1_1104623_1105400_-	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|52aa|down_0|NC_013501.1_1106903_1107059_-	NA	NA|846aa|down_1|NC_013501.1_1107083_1109621_-	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD	NA|620aa|down_2|NC_013501.1_1109781_1111641_-	PRK05667, dnaG, DNA primase; Validated	NA|754aa|down_3|NC_013501.1_1111770_1114032_+	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|299aa|down_4|NC_013501.1_1114035_1114932_+	pfam14054, DUF4249, Domain of unknown function (DUF4249)	NA|457aa|down_5|NC_013501.1_1114991_1116362_+	cd03788, GT20_TPS, trehalose-6-phosphate synthase	NA|239aa|down_6|NC_013501.1_1116368_1117085_+	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2	NA|633aa|down_7|NC_013501.1_1117059_1118958_-	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|63aa|down_8|NC_013501.1_1118902_1119091_-	NA	NA|290aa|down_9|NC_013501.1_1119187_1120057_+	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
GCF_000024845.1_ASM2484v1	NC_013501	Rhodothermus marinus DSM 4252, complete sequence	4	1172511-1172600	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG	Orphan	GAGCCGCTCCAGGCTGAGCACTC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA|223aa|up_6|NC_013501.1_1169104_1169773_+,NA|185aa|up_5|NC_013501.1_1169756_1170311_+,NA|116aa|up_4|NC_013501.1_1170323_1170671_+,NA|154aa|up_3|NC_013501.1_1170781_1171243_+,NA|138aa|up_1|NC_013501.1_1171603_1172017_+,NA	NA|405aa|up_9|NC_013501.1_1165101_1166316_+	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|65aa|up_8|NC_013501.1_1166419_1166614_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|702aa|up_7|NC_013501.1_1166737_1168843_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|223aa|up_6|NC_013501.1_1169104_1169773_+	NA	NA|185aa|up_5|NC_013501.1_1169756_1170311_+	NA	NA|116aa|up_4|NC_013501.1_1170323_1170671_+	NA	NA|154aa|up_3|NC_013501.1_1170781_1171243_+	NA	NA|91aa|up_2|NC_013501.1_1171326_1171599_+	TIGR01558, hypothetical_protein, phage terminase, small subunit, putative, P27 family	NA|138aa|up_1|NC_013501.1_1171603_1172017_+	NA	NA|149aa|up_0|NC_013501.1_1172016_1172463_+	pfam13398, Peptidase_M50B, Peptidase M50B-like	NA|412aa|down_0|NC_013501.1_1172668_1173904_+	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|102aa|down_1|NC_013501.1_1174064_1174370_+	pfam13309, HTH_22, HTH domain	NA|243aa|down_2|NC_013501.1_1174827_1175556_-	pfam04024, PspC, PspC domain	NA|197aa|down_3|NC_013501.1_1175619_1176210_-	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|128aa|down_4|NC_013501.1_1176249_1176633_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|451aa|down_5|NC_013501.1_1176746_1178099_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|209aa|down_6|NC_013501.1_1178149_1178776_+	TIGR00002, 30S_ribosomal_protein_S16_chloroplastic, ribosomal protein S16	NA|180aa|down_7|NC_013501.1_1178814_1179354_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|240aa|down_8|NC_013501.1_1179380_1180100_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|125aa|down_9|NC_013501.1_1180115_1180490_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_000024845.1_ASM2484v1	NC_013501	Rhodothermus marinus DSM 4252, complete sequence	5	1886877-1889769	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG	Type III-B,Type III-D,Type III-C,Type III-A	ATTTCAATACCAAAAAGGTGCGATTAAAAC,TTTCAATACCAAAAAGGTGCGATTAAAAC,TTTCAATACCAAAAAGGTGCGATTAAAAC	30,29,29	0	0	NA	NA	I-A,II-B,III-A:I-A,II-B,III-A:I-A,II-B,III-A	43,43,42	43	TypeIII-B,TypeIII-D,TypeIII-C,TypeIII-A	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA,NA	NA|437aa|up_9|NC_013501.1_1874006_1875317_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|188aa|up_8|NC_013501.1_1875313_1875877_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|356aa|up_7|NC_013501.1_1875944_1877012_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|369aa|up_6|NC_013501.1_1877092_1878199_+	cd05651, M20_ArgE_DapE-like, M20 peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	NA|252aa|up_5|NC_013501.1_1878291_1879047_-	pfam06439, DUF1080, Domain of Unknown Function (DUF1080)	NA|632aa|up_4|NC_013501.1_1879621_1881517_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|440aa|up_3|NC_013501.1_1881691_1883011_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|97aa|up_2|NC_013501.1_1883011_1883302_-	pfam08734, GYD, GYD domain	NA|262aa|up_1|NC_013501.1_1883873_1884659_-	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|679aa|up_0|NC_013501.1_1884734_1886771_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	cas2|89aa|down_0|NC_013501.1_1890031_1890298_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|361aa|down_1|NC_013501.1_1890299_1891382_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	NA|201aa|down_2|NC_013501.1_1891378_1891981_-	cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases	csx1|422aa|down_3|NC_013501.1_1892076_1893342_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csm5gr7|486aa|down_4|NC_013501.1_1893344_1894802_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|330aa|down_5|NC_013501.1_1894809_1895799_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|261aa|down_6|NC_013501.1_1895798_1896581_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|146aa|down_7|NC_013501.1_1896596_1897034_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|801aa|down_8|NC_013501.1_1897036_1899439_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas4|181aa|down_9|NC_013501.1_1899483_1900026_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83
GCF_000024845.1_ASM2484v1	NC_013501	Rhodothermus marinus DSM 4252, complete sequence	6	2079047-2081608	6,3,3	CRISPRCasFinder,CRT,PILER-CR	no		csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG	Orphan	ATTTCAATACCAAAAAGGTGCGATTAAAAC,ATTTCAATACCAAAAAGGTGCGATTAAAAC,ATTTCAATACCAAAAAGGTGCGATTAAAAC	30,30,30	0	0	NA	NA	I-A,II-B,III-A:I-A,II-B,III-A:I-A,II-B,III-A	38,38,37	38	Orphan	csa3,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,Cas14u_CAS-V,RT,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas4,cas8b2,cas6,WYL,cas3HD,DinG,cas8u1,csb2gr5,csb1gr7,csx20,cas14j	NA,NA	NA|101aa|up_9|NC_013501.1_2068861_2069164_-	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|307aa|up_8|NC_013501.1_2069395_2070316_-	pfam14238, DUF4340, Domain of unknown function (DUF4340)	NA|509aa|up_7|NC_013501.1_2070336_2071863_-	TIGR03521, gliding_motility_protein_GldG, gliding-associated putative ABC transporter substrate-binding component GldG	NA|236aa|up_6|NC_013501.1_2071866_2072574_-	TIGR03518, ABC_transporter_permease_protein, gliding motility-associated ABC transporter permease protein GldF	NA|309aa|up_5|NC_013501.1_2072587_2073514_-	TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA	NA|396aa|up_4|NC_013501.1_2073998_2075186_+	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|123aa|up_3|NC_013501.1_2075182_2075551_-	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|85aa|up_2|NC_013501.1_2075547_2075802_-	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|445aa|up_1|NC_013501.1_2075827_2077162_-	pfam01204, Trehalase, Trehalase	NA|556aa|up_0|NC_013501.1_2077296_2078964_+	PLN02791, PLN02791, Nudix hydrolase homolog	NA|219aa|down_0|NC_013501.1_2082114_2082771_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|321aa|down_1|NC_013501.1_2082784_2083747_+	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|318aa|down_2|NC_013501.1_2083750_2084704_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|445aa|down_3|NC_013501.1_2084717_2086052_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|313aa|down_4|NC_013501.1_2086048_2086987_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|382aa|down_5|NC_013501.1_2086994_2088140_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|365aa|down_6|NC_013501.1_2088146_2089241_+	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms]	NA|270aa|down_7|NC_013501.1_2089255_2090065_-	cd07177, terB_like, tellurium resistance terB-like protein	NA|930aa|down_8|NC_013501.1_2090206_2092996_-	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|459aa|down_9|NC_013501.1_2093096_2094473_-	cd05803, PGM_like4, This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes
