assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	1	187552-187636	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	187578-187610|187578-187610	NC_017340.1_1383416-1383448|NC_017340.1_1471796-1471764	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_017340.1_176697_177903_+,NA|68aa|down_0|NC_017340.1_187697_187901_-	NA|402aa|up_9|NC_017340.1_176697_177903_+	NA	NA|402aa|up_8|NC_017340.1_177903_179109_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_017340.1_179119_179677_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_017340.1_179676_180564_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_017340.1_180617_181880_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_017340.1_181956_183102_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_017340.1_183166_183493_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_017340.1_183499_183883_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_017340.1_184309_185797_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_017340.1_186443_187403_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_017340.1_187697_187901_-	NA	NA|171aa|down_1|NC_017340.1_188079_188592_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_017340.1_188933_189674_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_017340.1_189687_190659_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_017340.1_190655_191417_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_017340.1_191429_192461_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_017340.1_192677_193037_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_017340.1_193210_194236_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_017340.1_194621_195872_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_017340.1_196318_203494_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	2	425818-425919	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NC_017340.1_417377_417587_-,NA|128aa|up_6|NC_017340.1_418411_418795_-,NA|33aa|up_0|NC_017340.1_425042_425141_+,NA|221aa|down_1|NC_017340.1_427009_427672_-,NA|179aa|down_7|NC_017340.1_433763_434300_-	NA|84aa|up_9|NC_017340.1_417087_417339_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NC_017340.1_417377_417587_-	NA	NA|194aa|up_7|NC_017340.1_417764_418346_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NC_017340.1_418411_418795_-	NA	NA|209aa|up_5|NC_017340.1_419064_419691_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NC_017340.1_420134_421658_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_017340.1_421673_422243_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_017340.1_422734_423490_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_017340.1_423569_424958_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NC_017340.1_425042_425141_+	NA	NA|319aa|down_0|NC_017340.1_425935_426892_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_017340.1_427009_427672_-	NA	NA|136aa|down_2|NC_017340.1_427814_428222_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_017340.1_428734_429313_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_017340.1_429312_430581_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_017340.1_430618_432085_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_017340.1_432109_433651_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_017340.1_433763_434300_-	NA	NA|235aa|down_8|NC_017340.1_434691_435396_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_017340.1_435794_436067_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	3	774801-774883	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_017340.1_761414_761621_+,NA|34aa|down_1|NC_017340.1_776538_776640_+,NA|52aa|down_8|NC_017340.1_784486_784642_+	NA|69aa|up_9|NC_017340.1_761414_761621_+	NA	NA|237aa|up_8|NC_017340.1_761708_762419_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_017340.1_762402_763407_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_017340.1_763880_765821_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_017340.1_766090_767974_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_017340.1_767985_769767_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_017340.1_769988_770966_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_017340.1_770958_772473_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_017340.1_772712_773771_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_017340.1_774109_774652_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_017340.1_775530_776448_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_017340.1_776538_776640_+	NA	NA|502aa|down_2|NC_017340.1_776717_778223_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_017340.1_778563_779064_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_017340.1_779083_779950_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_017340.1_780750_781149_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_017340.1_781111_783217_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_017340.1_783334_784306_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_017340.1_784486_784642_+	NA	NA|324aa|down_9|NC_017340.1_784680_785652_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	4	815748-815826	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	815772-815802|815772-815802|815772-815802	NC_017340.1_310779-310749|NC_017340.1_310724-310694|NC_017340.1_1687617-1687647	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_017340.1_806624_806729_+,NA|36aa|up_5|NC_017340.1_808161_808269_+,NA	NA|191aa|up_9|NC_017340.1_803065_803638_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_017340.1_804051_806583_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_017340.1_806624_806729_+	NA	NA|370aa|up_6|NC_017340.1_806897_808008_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_017340.1_808161_808269_+	NA	NA|280aa|up_4|NC_017340.1_808416_809256_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_017340.1_809429_810080_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_017340.1_810076_810313_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_017340.1_810581_812567_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_017340.1_812574_815421_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_017340.1_816084_817017_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_017340.1_817022_817862_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_017340.1_817869_818355_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_017340.1_818362_819802_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_017340.1_819868_820804_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_017340.1_821689_822601_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_017340.1_822597_823593_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_017340.1_823703_824648_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_017340.1_825211_825799_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_017340.1_826041_826944_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	5	821203-821472	1	CRT	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	42	821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821239-821260|821297-821319|821297-821319|821297-821319|821297-821319|821297-821319|821297-821319|821297-821319|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821356-821377|821414-821436|821414-821436|821414-821436|821414-821436|821414-821436|821414-821436|821414-821436	NC_017340.1_187560-187539|NC_017340.1_310695-310674|NC_017340.1_310805-310784|NC_017340.1_649357-649336|NC_017340.1_773842-773863|NC_017340.1_864559-864580|NC_017340.1_1383340-1383319|NC_017340.1_1471872-1471893|NC_017340.1_1653211-1653232|NC_017340.1_1667766-1667745|NC_017340.1_1985119-1985140|NC_017340.1_978836-978857|NC_017340.1_1687472-1687493|NC_017340.1_1687705-1687726|NC_017340.1_774814-774792|NC_017340.1_775092-775070|NC_017340.1_1383457-1383435|NC_017340.1_1985177-1985199|NC_017340.1_2328893-2328915|NC_017340.1_1471755-1471777|NC_017340.1_2087723-2087745|NC_017340.1_187560-187539|NC_017340.1_310695-310674|NC_017340.1_310805-310784|NC_017340.1_649357-649336|NC_017340.1_773842-773863|NC_017340.1_864559-864580|NC_017340.1_1383340-1383319|NC_017340.1_1471872-1471893|NC_017340.1_1653211-1653232|NC_017340.1_1667766-1667745|NC_017340.1_1985119-1985140|NC_017340.1_978836-978857|NC_017340.1_1687472-1687493|NC_017340.1_1687705-1687726|NC_017340.1_774814-774792|NC_017340.1_775092-775070|NC_017340.1_1383457-1383435|NC_017340.1_1985177-1985199|NC_017340.1_2328893-2328915|NC_017340.1_1471755-1471777|NC_017340.1_2087723-2087745	NA	4	4	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NC_017340.1_808416_809256_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NC_017340.1_809429_810080_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NC_017340.1_810076_810313_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NC_017340.1_810581_812567_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NC_017340.1_812574_815421_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NC_017340.1_816084_817017_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NC_017340.1_817022_817862_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NC_017340.1_817869_818355_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NC_017340.1_818362_819802_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NC_017340.1_819868_820804_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NC_017340.1_821689_822601_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NC_017340.1_822597_823593_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NC_017340.1_823703_824648_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NC_017340.1_825211_825799_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NC_017340.1_826041_826944_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NC_017340.1_827646_828276_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NC_017340.1_829088_830102_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NC_017340.1_830154_831165_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NC_017340.1_831303_832494_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NC_017340.1_832615_833377_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	6	864486-864567	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	864510-864543	NC_017340.1_1383448-1383415	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NC_017340.1_857588_858170_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_017340.1_858242_858860_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_017340.1_859014_859509_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_017340.1_859907_860330_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_017340.1_860477_861194_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_017340.1_861276_861816_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_017340.1_861966_862287_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_017340.1_862430_862787_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_017340.1_862944_863325_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_017340.1_863503_864382_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_017340.1_865178_865565_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_017340.1_865557_865854_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_017340.1_866103_867129_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_017340.1_867121_867817_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_017340.1_867834_868656_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_017340.1_869009_869204_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_017340.1_869437_870289_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_017340.1_870616_871378_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_017340.1_871475_872783_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_017340.1_872888_874139_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	7	1653135-1653219	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1653161-1653193	NC_017340.1_1383448-1383416	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_017340.1_1642344_1643028_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_017340.1_1643271_1643448_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_017340.1_1643740_1645087_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_017340.1_1645093_1645846_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_017340.1_1645847_1646786_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_017340.1_1646789_1647929_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_017340.1_1648064_1649897_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_017340.1_1649965_1650592_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_017340.1_1650623_1651601_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_017340.1_1651701_1652826_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_017340.1_1653391_1655215_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_017340.1_1655560_1655812_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_017340.1_1655856_1656831_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_017340.1_1656887_1659089_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_017340.1_1659093_1659555_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_017340.1_1659646_1660333_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_017340.1_1660372_1661089_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_017340.1_1661091_1661445_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_017340.1_1661445_1662030_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_017340.1_1662019_1662589_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	8	2087642-2087723	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2087666-2087699|2087666-2087699|2087666-2087699|2087666-2087699|2087666-2087699	NC_017340.1_815747-815780|NC_017340.1_1171706-1171673|NC_017340.1_1779903-1779870|NC_017340.1_1387789-1387822|NC_017340.1_2780741-2780774	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_7|NC_017340.1_2079386_2079728_+,NA|61aa|up_6|NC_017340.1_2079931_2080114_+,NA|81aa|up_4|NC_017340.1_2081207_2081450_+,NA	NA|238aa|up_9|NC_017340.1_2077719_2078433_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NC_017340.1_2078448_2079381_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NC_017340.1_2079386_2079728_+	NA	NA|61aa|up_6|NC_017340.1_2079931_2080114_+	NA	NA|328aa|up_5|NC_017340.1_2080213_2081197_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NC_017340.1_2081207_2081450_+	NA	NA|346aa|up_3|NC_017340.1_2081512_2082550_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NC_017340.1_2083668_2084685_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NC_017340.1_2084706_2085762_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NC_017340.1_2086197_2087421_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NC_017340.1_2087864_2089172_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NC_017340.1_2089711_2091328_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NC_017340.1_2091403_2091688_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NC_017340.1_2091862_2092606_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NC_017340.1_2092630_2093890_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NC_017340.1_2094086_2094713_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NC_017340.1_2095073_2095859_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NC_017340.1_2096458_2096593_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NC_017340.1_2096828_2097392_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NC_017340.1_2097394_2097538_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	9	2219359-2219439	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NC_017340.1_2214233_2214464_-,NA|364aa|up_0|NC_017340.1_2218250_2219342_+,NA|35aa|down_0|NC_017340.1_2219774_2219879_-,NA|53aa|down_1|NC_017340.1_2220558_2220717_+	NA|237aa|up_9|NC_017340.1_2209844_2210555_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_017340.1_2210675_2211119_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_017340.1_2211318_2211732_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_017340.1_2212188_2213562_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_017340.1_2214233_2214464_-	NA	NA|313aa|up_4|NC_017340.1_2214494_2215433_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_017340.1_2215868_2216534_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_017340.1_2216685_2217006_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NC_017340.1_2217007_2217985_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_017340.1_2218250_2219342_+	NA	NA|35aa|down_0|NC_017340.1_2219774_2219879_-	NA	NA|53aa|down_1|NC_017340.1_2220558_2220717_+	NA	NA|286aa|down_2|NC_017340.1_2221374_2222232_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_017340.1_2222299_2223082_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_017340.1_2223313_2225119_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_017340.1_2225799_2227338_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_017340.1_2227372_2229505_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_017340.1_2229516_2229951_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_017340.1_2229950_2231057_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_017340.1_2231375_2238821_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	10	2231680-2231765	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NC_017340.1_2218250_2219342_+,NA|35aa|up_8|NC_017340.1_2219774_2219879_-,NA|53aa|up_7|NC_017340.1_2220558_2220717_+,NA	NA|364aa|up_9|NC_017340.1_2218250_2219342_+	NA	NA|35aa|up_8|NC_017340.1_2219774_2219879_-	NA	NA|53aa|up_7|NC_017340.1_2220558_2220717_+	NA	NA|286aa|up_6|NC_017340.1_2221374_2222232_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_017340.1_2222299_2223082_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_017340.1_2223313_2225119_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_017340.1_2225799_2227338_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_017340.1_2227372_2229505_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_017340.1_2229516_2229951_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_017340.1_2229950_2231057_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_017340.1_2239098_2240454_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_017340.1_2240480_2241413_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_017340.1_2241414_2242224_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_017340.1_2242412_2243321_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_017340.1_2249561_2250626_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NC_017340.1_2250773_2252216_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NC_017340.1_2252538_2253012_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NC_017340.1_2253110_2254454_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NC_017340.1_2254630_2255314_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NC_017340.1_2255332_2256520_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_000025145.1_ASM2514v1	NC_017340	Staphylococcus aureus 04-02981, complete sequence	11	2339722-2339802	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	16	2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777|2339747-2339777	NC_017340.1_828491-828521|NC_017340.1_828547-828577|NC_017340.1_88943-88973|NC_017340.1_387111-387081|NC_017340.1_649421-649391|NC_017340.1_828603-828633|NC_017340.1_864822-864852|NC_017340.1_1074816-1074846|NC_017340.1_1177304-1177274|NC_017340.1_1383404-1383374|NC_017340.1_1471808-1471838|NC_017340.1_1471924-1471954|NC_017340.1_1667829-1667799|NC_017340.1_1983771-1983801|NC_017340.1_2328946-2328976|NC_017340.1_2504467-2504497	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_017340.1_2330255_2330420_+,NA|106aa|up_8|NC_017340.1_2330664_2330982_+,NA|84aa|up_5|NC_017340.1_2336103_2336355_+,NA|62aa|up_0|NC_017340.1_2339494_2339680_+,NA	NA|55aa|up_9|NC_017340.1_2330255_2330420_+	NA	NA|106aa|up_8|NC_017340.1_2330664_2330982_+	NA	NA|1056aa|up_7|NC_017340.1_2331165_2334333_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_017340.1_2334449_2335715_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_017340.1_2336103_2336355_+	NA	NA|255aa|up_4|NC_017340.1_2336346_2337111_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_017340.1_2337272_2337713_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_017340.1_2337705_2338917_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_017340.1_2339018_2339369_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_017340.1_2339494_2339680_+	NA	NA|341aa|down_0|NC_017340.1_2339945_2340968_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_017340.1_2340987_2341587_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_017340.1_2341593_2341827_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_017340.1_2341832_2342279_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_017340.1_2342292_2342778_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_017340.1_2342774_2344034_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_017340.1_2344096_2344591_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_017340.1_2344592_2345099_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_017340.1_2345129_2346134_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_017340.1_2346303_2346909_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
