The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	2329769	410828	419650	2329769	tRNA	Staphylococcus_phage(33.33%)	8	NA	NA
WP_012937744.1|410828_411665_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	36.2	1.1e-21
WP_012937745.1|411649_412513_+	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	27.9	7.4e-10
WP_012937746.1|412506_413313_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_012937747.1|413309_414047_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_012937748.1|414287_416231_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.0	6.8e-11
WP_176767961.1|416688_417768_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2I2L4R9	Orpheovirus	35.2	2.4e-50
WP_012937750.1|417772_418411_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	42.6	1.4e-37
WP_012937751.1|418423_419650_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.9	3.0e-105
>prophage 2
NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	2329769	769672	778307	2329769		Hokovirus(33.33%)	10	NA	NA
WP_012938045.1|769672_771007_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.9	5.1e-18
WP_012938046.1|771027_771873_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	30.3	1.0e-19
WP_012938047.1|771869_772472_+	energy-coupled thiamine transporter ThiT	NA	NA	NA	NA	NA
WP_049763440.1|772642_773170_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	42.4	7.0e-11
WP_012938049.1|773188_773386_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_012938050.1|773431_773785_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_012938051.1|773883_774249_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0K2CZV4	Paenibacillus_phage	41.7	5.5e-15
WP_012938052.1|774398_774665_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_012938053.1|775415_776684_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	41.3	2.6e-72
WP_012938054.1|776762_778307_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.8	1.7e-20
>prophage 3
NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	2329769	858003	866179	2329769	transposase	Catovirus(50.0%)	8	NA	NA
WP_012938121.1|858003_859002_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	31.5	2.0e-22
WP_041666099.1|859797_860100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012938122.1|860268_861132_+	LicD family protein	NA	A0A1V0SD50	Indivirus	43.8	1.3e-06
WP_012938123.1|861128_861851_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_012938124.1|861865_862915_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9KZK0	Tupanvirus	29.7	8.7e-29
WP_012938125.1|862979_863954_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	35.3	3.3e-14
WP_012938126.1|864026_865010_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	45.1	2.4e-12
WP_012938127.1|865204_866179_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	28.3	3.3e-14
>prophage 4
NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	2329769	1206933	1216868	2329769	terminase	Erysipelothrix_phage(44.44%)	14	NA	NA
WP_012938430.1|1206933_1207851_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	25.4	1.2e-13
WP_012938431.1|1208121_1208478_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_012938432.1|1208474_1208768_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012938434.1|1209073_1209517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938435.1|1209677_1210574_-	amidoligase family protein	NA	A0A2K9V489	Faecalibacterium_phage	43.4	4.9e-65
WP_012938436.1|1210674_1210908_-	DUF4314 domain-containing protein	NA	A0A2K5B281	Erysipelothrix_phage	57.5	7.5e-18
WP_012938437.1|1210891_1211698_-	hypothetical protein	NA	A0A2K5B280	Erysipelothrix_phage	39.8	1.4e-39
WP_012938438.1|1211785_1213036_-	ParB N-terminal domain-containing protein	NA	E4ZFL4	Streptococcus_phage	45.3	5.6e-99
WP_041666182.1|1213048_1213594_-|terminase	terminase	terminase	A0A2K5B277	Erysipelothrix_phage	58.6	3.3e-56
WP_012938440.1|1213736_1214123_-	HNH endonuclease	NA	A0A2K5B276	Erysipelothrix_phage	58.1	4.4e-39
WP_012938441.1|1214250_1214679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_148213961.1|1214770_1215205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938443.1|1215219_1216569_-	DEAD/DEAH box helicase	NA	A0A1X9I6B0	Streptococcus_phage	60.0	6.1e-152
WP_012938444.1|1216565_1216868_-	VRR-NUC domain-containing protein	NA	M1PFY8	Streptococcus_phage	55.6	4.3e-21
>prophage 5
NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	2329769	1251424	1296637	2329769	transposase,integrase	Streptococcus_phage(60.0%)	44	1295686:1295701	1296663:1296678
WP_012938478.1|1251424_1252717_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	40.1	6.6e-79
WP_012938479.1|1252785_1252995_-	helix-turn-helix domain-containing protein	NA	A0A1S5SF07	Streptococcus_phage	48.2	7.5e-09
WP_143025783.1|1253106_1253439_-	peptidase M24	NA	NA	NA	NA	NA
WP_012938481.1|1253656_1254211_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	36.2	2.9e-15
WP_012938482.1|1254207_1254522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938483.1|1254506_1254806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938484.1|1254823_1255042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938485.1|1255261_1256014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012938486.1|1256041_1256548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012938487.1|1256937_1258926_-	DNA polymerase	NA	A0A2K5B2B0	Erysipelothrix_phage	66.0	7.4e-263
WP_012938488.1|1258986_1259166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938490.1|1259650_1260799_-	DUF2800 domain-containing protein	NA	M1Q218	Streptococcus_phage	59.0	1.7e-126
WP_012938491.1|1260788_1261100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938492.1|1261065_1261251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938493.1|1261380_1261956_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_012938494.1|1262336_1263263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012938495.1|1263255_1263717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012938496.1|1265882_1266194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081443263.1|1267121_1267490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012938498.1|1267536_1268349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938499.1|1268480_1269641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938501.1|1270143_1270563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938502.1|1270790_1271195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938503.1|1271278_1271917_-	DUF1266 domain-containing protein	NA	NA	NA	NA	NA
WP_012938504.1|1272152_1272812_-	aquaporin	NA	NA	NA	NA	NA
WP_012938505.1|1272899_1279103_-	YadA-like family protein	NA	NA	NA	NA	NA
WP_012938506.1|1280665_1281964_-	recombinase family protein	NA	M1NSJ1	Streptococcus_phage	47.5	1.4e-68
WP_012938507.1|1282009_1282174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938508.1|1282841_1283285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938509.1|1283367_1283523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148213934.1|1283624_1284515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012937547.1|1284944_1285349_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_012938408.1|1285360_1286359_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	31.5	5.2e-23
WP_012938510.1|1286715_1287084_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_012938511.1|1287080_1287359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_041666193.1|1287773_1288838_+	Fic family protein	NA	NA	NA	NA	NA
WP_012938513.1|1289610_1290264_-	DsbA family protein	NA	NA	NA	NA	NA
WP_012938514.1|1290295_1291174_-	radical SAM protein	NA	NA	NA	NA	NA
WP_041666194.1|1291415_1292531_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A286QQE5	Streptococcus_phage	47.9	3.9e-88
WP_012938516.1|1292532_1292928_-|transposase	IS200/IS605 family transposase	transposase	A0A286QN76	Streptococcus_phage	68.7	1.5e-50
WP_012938517.1|1293072_1293387_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_187287510.1|1293656_1293812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012938518.1|1294052_1294676_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
1295686:1295701	attL	AATCCCCTTCATCAGC	NA	NA	NA	NA
WP_012938520.1|1295707_1296637_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.9	1.5e-80
WP_012938520.1|1295707_1296637_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.9	1.5e-80
1296663:1296678	attR	GCTGATGAAGGGGATT	NA	NA	NA	NA
>prophage 6
NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	2329769	1408649	1419189	2329769		Prochlorococcus_phage(28.57%)	9	NA	NA
WP_012938623.1|1408649_1410161_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	34.1	6.8e-59
WP_012938624.1|1410308_1411592_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_074704204.1|1411605_1412205_-	IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	57.9	1.4e-52
WP_012938626.1|1412220_1412832_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	42.5	1.1e-28
WP_012938627.1|1412824_1413880_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.6	1.7e-69
WP_012938628.1|1413892_1415335_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.7	9.1e-61
WP_012938629.1|1415351_1415855_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.5	5.3e-24
WP_012938630.1|1416234_1416708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012938631.1|1416816_1419189_-	endonuclease MutS2	NA	A0A1V0SC35	Catovirus	32.8	1.6e-17
