assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025305.1_ASM2530v1	NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	1	100578-100685	1	CRISPRCasFinder	no		csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	Orphan	GCGTGCGGCCCCTACAGGTTTACACAATCAAAAGAACC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	NA,NA|95aa|down_7|NC_013740.1_108999_109284_+	NA|443aa|up_9|NC_013740.1_90277_91606_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|471aa|up_8|NC_013740.1_91637_93050_+	pfam02447, GntP_permease, GntP family permease	NA|320aa|up_7|NC_013740.1_93180_94140_+	cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains	NA|66aa|up_6|NC_013740.1_94187_94385_+	PRK09626, oorD, 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed	NA|382aa|up_5|NC_013740.1_94384_95530_+	PRK08659, PRK08659, 2-oxoacid:acceptor oxidoreductase subunit alpha	NA|272aa|up_4|NC_013740.1_95529_96345_+	PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated	NA|177aa|up_3|NC_013740.1_96347_96878_+	PRK08537, PRK08537, 2-oxoacid:ferredoxin oxidoreductase subunit gamma	NA|562aa|up_2|NC_013740.1_96913_98599_+	pfam00920, ILVD_EDD, Dehydratase family	NA|118aa|up_1|NC_013740.1_98657_99011_+	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE)	NA|440aa|up_0|NC_013740.1_99169_100489_+	TIGR03948, hypothetical_protein_FAEPRAM212_02812, butyryl-CoA:acetate CoA-transferase	NA|438aa|down_0|NC_013740.1_100900_102214_+	pfam09861, DUF2088, Domain of unknown function (DUF2088)	NA|507aa|down_1|NC_013740.1_102231_103752_+	TIGR03248, galactar-dH20, galactarate dehydratase	NA|430aa|down_2|NC_013740.1_103870_105160_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|148aa|down_3|NC_013740.1_105454_105898_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|271aa|down_4|NC_013740.1_105890_106703_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|225aa|down_5|NC_013740.1_106695_107370_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|301aa|down_6|NC_013740.1_107704_108607_+	cd01017, AdcA, Metal binding protein AdcA	NA|95aa|down_7|NC_013740.1_108999_109284_+	NA	NA|239aa|down_8|NC_013740.1_109542_110259_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|389aa|down_9|NC_013740.1_110262_111429_+	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS
GCF_000025305.1_ASM2530v1	NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	2	273815-273889	2	CRISPRCasFinder	no		csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	Orphan	TGTATTTTGGACTCACCCCAATAA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	NA,NA|176aa|down_0|NC_013740.1_273898_274426_-,NA|56aa|down_7|NC_013740.1_281796_281964_+	NA|323aa|up_9|NC_013740.1_263714_264683_+	cd11589, Agmatinase_like_1, Agmatinase and related proteins	NA|173aa|up_8|NC_013740.1_264686_265205_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|111aa|up_7|NC_013740.1_265343_265676_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|259aa|up_6|NC_013740.1_265672_266449_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|422aa|up_5|NC_013740.1_266631_267897_+	pfam06245, DUF1015, Protein of unknown function (DUF1015)	NA|362aa|up_4|NC_013740.1_267880_268966_+	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|419aa|up_3|NC_013740.1_268978_270235_+	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism]	NA|185aa|up_2|NC_013740.1_270468_271023_+	pfam04011, LemA, LemA family	NA|260aa|up_1|NC_013740.1_271053_271833_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|474aa|up_0|NC_013740.1_272137_273559_-	TIGR03955, iron-only_hydrogenase_maturation_rSAM_protein_HydG, [FeFe] hydrogenase H-cluster radical SAM maturase HydG	NA|176aa|down_0|NC_013740.1_273898_274426_-	NA	NA|425aa|down_1|NC_013740.1_274891_276166_+	PRK12297, obgE, GTPase CgtA; Reviewed	NA|375aa|down_2|NC_013740.1_276226_277351_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|436aa|down_3|NC_013740.1_277313_278621_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|357aa|down_4|NC_013740.1_278808_279879_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|233aa|down_5|NC_013740.1_279898_280597_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|405aa|down_6|NC_013740.1_280589_281804_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|56aa|down_7|NC_013740.1_281796_281964_+	NA	NA|188aa|down_8|NC_013740.1_282020_282584_-	pfam05962, HutD, HutD	NA|302aa|down_9|NC_013740.1_282785_283691_+	TIGR02024, FtcD, glutamate formiminotransferase
GCF_000025305.1_ASM2530v1	NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	3	844132-844289	3	CRISPRCasFinder	no		csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	Orphan	CCCCCGTATGGGGGCGTGGATTGAAAT	27	0	0	NA	NA	I-C	2	2	Orphan	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	NA|228aa|up_2|NC_013740.1_841589_842273_+,NA|62aa|up_0|NC_013740.1_843664_843850_+,NA|66aa|down_1|NC_013740.1_846261_846459_+,NA|240aa|down_2|NC_013740.1_846392_847112_+	NA|160aa|up_9|NC_013740.1_834535_835015_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|370aa|up_8|NC_013740.1_835139_836249_+	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|396aa|up_7|NC_013740.1_836265_837453_+	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional	NA|491aa|up_6|NC_013740.1_837475_838948_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|482aa|up_5|NC_013740.1_838963_840409_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|158aa|up_4|NC_013740.1_840405_840879_+	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|235aa|up_3|NC_013740.1_840878_841583_+	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed	NA|228aa|up_2|NC_013740.1_841589_842273_+	NA	NA|174aa|up_1|NC_013740.1_842840_843362_+	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies	NA|62aa|up_0|NC_013740.1_843664_843850_+	NA	NA|484aa|down_0|NC_013740.1_844594_846046_+	TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose phosphotransferase, WbaP	NA|66aa|down_1|NC_013740.1_846261_846459_+	NA	NA|240aa|down_2|NC_013740.1_846392_847112_+	NA	NA|139aa|down_3|NC_013740.1_847327_847744_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|101aa|down_4|NC_013740.1_847958_848261_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|374aa|down_5|NC_013740.1_848764_849886_+	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|113aa|down_6|NC_013740.1_850169_850508_+	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins	NA|258aa|down_7|NC_013740.1_850842_851616_+	pfam14393, DUF4422, Domain of unknown function (DUF4422)	NA|165aa|down_8|NC_013740.1_851775_852270_-	pfam13276, HTH_21, HTH-like domain	NA|439aa|down_9|NC_013740.1_853001_854318_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system
GCF_000025305.1_ASM2530v1	NC_013740	Acidaminococcus fermentans DSM 20731, complete sequence	4	882151-886170	4,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	Type I-U, Type I-U?,Type I-C	GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT,GTCGCNCCCCGCANNAGGGGGCGTGGATTGAAAT,GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT,GTCGCCCCCGTATGGGGGCGTGGATTGAAAT	31,34,31,31	0	0	NA	NA	NA:NA:NA:I-C	61,61,56,56	61	TypeI-U,TypeI-U?,TypeI-C	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DEDDh,cas14j	NA|185aa|up_9|NC_013740.1_871050_871605_+,NA|390aa|down_0|NC_013740.1_886448_887618_+	NA|185aa|up_9|NC_013740.1_871050_871605_+	NA	NA|99aa|up_8|NC_013740.1_872480_872777_+	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only]	NA|350aa|up_7|NC_013740.1_872796_873846_+	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only]	cas3|729aa|up_6|NC_013740.1_874495_876682_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|218aa|up_5|NC_013740.1_876713_877367_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|592aa|up_4|NC_013740.1_877363_879139_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|299aa|up_3|NC_013740.1_879138_880035_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|225aa|up_2|NC_013740.1_880031_880706_+	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas1|344aa|up_1|NC_013740.1_880702_881734_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NC_013740.1_881738_882029_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|390aa|down_0|NC_013740.1_886448_887618_+	NA	NA|387aa|down_1|NC_013740.1_887632_888793_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|194aa|down_2|NC_013740.1_889016_889598_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|537aa|down_3|NC_013740.1_889902_891513_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|248aa|down_4|NC_013740.1_891641_892385_+	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|222aa|down_5|NC_013740.1_892457_893123_+	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein	NA|230aa|down_6|NC_013740.1_893119_893809_+	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|429aa|down_7|NC_013740.1_893830_895117_+	cd06438, EpsO_like, EpsO protein participates in the methanolan synthesis	NA|920aa|down_8|NC_013740.1_895800_898560_+	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA	NA|415aa|down_9|NC_013740.1_898887_900132_+	COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]
