assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000025645.1_ASM2564v1	NC_013921	Thermoanaerobacter italicus Ab9, complete sequence	1	759928-763624	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	Type III-B,Type III-C, Type III-C?,Type III-D,Type III-A	GTTTTTAGCCTACCTATAAGGAATTGAAAC,GTTTTTAGCCTACCTATAAGGAATTGAAAC,GTTTTTAGCCTACCTATAAGGAATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	54,55,55	55	TypeIII-B,TypeIII-C,TypeIII-C?,TypeIII-D,TypeIII-A	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	NA,NA	NA|1389aa|up_9|NC_013921.1_744358_748525_+	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein	NA|441aa|up_8|NC_013921.1_748517_749840_+	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein	cmr1gr7|444aa|up_7|NC_013921.1_750183_751515_+	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|134aa|up_6|NC_013921.1_751498_751900_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	csx1|492aa|up_5|NC_013921.1_751981_753457_+	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	cmr4gr7|323aa|up_4|NC_013921.1_753486_754455_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|136aa|up_3|NC_013921.1_754451_754859_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|268aa|up_2|NC_013921.1_754848_755652_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cas10|907aa|up_1|NC_013921.1_755799_758520_+	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr3gr5|357aa|up_0|NC_013921.1_758523_759594_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	NA|407aa|down_0|NC_013921.1_763709_764930_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|332aa|down_1|NC_013921.1_765798_766794_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|290aa|down_2|NC_013921.1_767925_768795_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|231aa|down_3|NC_013921.1_768835_769528_+	pfam18050, Cyclophil_like2, Cyclophilin-like family	NA|165aa|down_4|NC_013921.1_769880_770375_+	PRK07116, PRK07116, flavodoxin; Provisional	NA|147aa|down_5|NC_013921.1_770435_770876_+	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|131aa|down_6|NC_013921.1_771015_771408_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|163aa|down_7|NC_013921.1_771770_772259_+	pfam06695, Sm_multidrug_ex, Putative small multi-drug export protein	NA|669aa|down_8|NC_013921.1_772677_774684_+	pfam03030, H_PPase, Inorganic H+ pyrophosphatase	NA|147aa|down_9|NC_013921.1_774827_775268_+	pfam04246, RseC_MucC, Positive regulator of sigma(E), RseC/MucC
GCF_000025645.1_ASM2564v1	NC_013921	Thermoanaerobacter italicus Ab9, complete sequence	2	1389800-1391699	2,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cmr3gr5,cmr5gr11,cmr4gr7,cas10,cmr6gr7,cmr1gr7,RT	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	Type III-B,Type III-C, Type III-B?,Type III-D,Type III-A	CACTATTTTCAGGATAGGTAGGCTAAAAAC,GTTTTTAGCCTACCTATCCTGAAAATAGT,ACTATTTTCAGGATAGGTAGGCTAAAAAC	30,29,29	2	4	1390835-1390870|1390835-1390870|1390835-1390870|1391300-1391338	NC_013921.1_440685-440720|NC_013921.1_653860-653895|NC_013921.1_1170186-1170221|NC_013921.1_2142008-2141970	NA:NA:NA	28,28,28	28	TypeIII-B,TypeIII-C,TypeIII-B?,TypeIII-D,TypeIII-A	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	cmr3gr5|348aa|up_6|NC_013921.1_1379580_1380624_-,cmr5gr11|125aa|up_5|NC_013921.1_1380627_1381002_-,NA|234aa|down_6|NC_013921.1_1399640_1400342_+,NA|185aa|down_8|NC_013921.1_1402301_1402856_-	NA|854aa|up_9|NC_013921.1_1372680_1375242_-	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]	NA|1228aa|up_8|NC_013921.1_1375257_1378941_-	pfam17675, APG6_N, Apg6 coiled-coil region	NA|159aa|up_7|NC_013921.1_1378942_1379419_-	NF033453, BREX_3_BrxF, BREX-3 system P-loop-containing protein BrxF	cmr3gr5|348aa|up_6|NC_013921.1_1379580_1380624_-	NA	cmr5gr11|125aa|up_5|NC_013921.1_1380627_1381002_-	NA	cmr4gr7|399aa|up_4|NC_013921.1_1380998_1382195_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cas10|1178aa|up_3|NC_013921.1_1382199_1385733_-	cd09701, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr6gr7|417aa|up_2|NC_013921.1_1385764_1387015_-	pfam03787, RAMPs, RAMP superfamily	cmr1gr7|339aa|up_1|NC_013921.1_1387007_1388024_-	cd09657, Cmr1_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr1	NA|407aa|up_0|NC_013921.1_1388493_1389714_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|123aa|down_0|NC_013921.1_1391896_1392265_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|155aa|down_1|NC_013921.1_1393242_1393707_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|323aa|down_2|NC_013921.1_1393707_1394676_+	pfam13800, Sigma_reg_N, Sigma factor regulator N-terminal	NA|423aa|down_3|NC_013921.1_1394719_1395988_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	RT|471aa|down_4|NC_013921.1_1396797_1398210_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|399aa|down_5|NC_013921.1_1398269_1399466_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|234aa|down_6|NC_013921.1_1399640_1400342_+	NA	RT|471aa|down_7|NC_013921.1_1400424_1401837_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|185aa|down_8|NC_013921.1_1402301_1402856_-	NA	NA|237aa|down_9|NC_013921.1_1402934_1403645_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000025645.1_ASM2564v1	NC_013921	Thermoanaerobacter italicus Ab9, complete sequence	3	1417978-1418079	3	CRISPRCasFinder	no	RT	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	Unclear	TATCTCTCCTACTATCTTCTTTGT	24	0	0	NA	NA	NA	1	1	Orphan	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	NA|75aa|up_9|NC_013921.1_1413237_1413462_-,NA|131aa|up_8|NC_013921.1_1413448_1413841_-,NA|200aa|up_7|NC_013921.1_1413855_1414455_-,NA|135aa|up_6|NC_013921.1_1414457_1414862_-,NA|112aa|up_5|NC_013921.1_1414861_1415197_-,NA|122aa|up_4|NC_013921.1_1415196_1415562_-,NA|123aa|up_3|NC_013921.1_1415561_1415930_-,NA|83aa|up_2|NC_013921.1_1415926_1416175_-,NA|350aa|up_1|NC_013921.1_1416190_1417240_-,NA|80aa|down_0|NC_013921.1_1419165_1419405_-,NA|53aa|down_1|NC_013921.1_1419411_1419570_-,NA|72aa|down_2|NC_013921.1_1419571_1419787_-,NA|410aa|down_3|NC_013921.1_1419752_1420982_-,NA|173aa|down_6|NC_013921.1_1423821_1424340_-,NA|132aa|down_7|NC_013921.1_1424415_1424811_-,NA|178aa|down_8|NC_013921.1_1424975_1425509_-,NA|326aa|down_9|NC_013921.1_1425508_1426486_-	NA|75aa|up_9|NC_013921.1_1413237_1413462_-	NA	NA|131aa|up_8|NC_013921.1_1413448_1413841_-	NA	NA|200aa|up_7|NC_013921.1_1413855_1414455_-	NA	NA|135aa|up_6|NC_013921.1_1414457_1414862_-	NA	NA|112aa|up_5|NC_013921.1_1414861_1415197_-	NA	NA|122aa|up_4|NC_013921.1_1415196_1415562_-	NA	NA|123aa|up_3|NC_013921.1_1415561_1415930_-	NA	NA|83aa|up_2|NC_013921.1_1415926_1416175_-	NA	NA|350aa|up_1|NC_013921.1_1416190_1417240_-	NA	NA|119aa|up_0|NC_013921.1_1417255_1417612_-	pfam09956, DUF2190, Uncharacterized conserved protein (DUF2190)	NA|80aa|down_0|NC_013921.1_1419165_1419405_-	NA	NA|53aa|down_1|NC_013921.1_1419411_1419570_-	NA	NA|72aa|down_2|NC_013921.1_1419571_1419787_-	NA	NA|410aa|down_3|NC_013921.1_1419752_1420982_-	NA	NA|492aa|down_4|NC_013921.1_1420984_1422460_-	pfam05133, Phage_prot_Gp6, Phage portal protein, SPP1 Gp6-like	NA|461aa|down_5|NC_013921.1_1422452_1423835_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|173aa|down_6|NC_013921.1_1423821_1424340_-	NA	NA|132aa|down_7|NC_013921.1_1424415_1424811_-	NA	NA|178aa|down_8|NC_013921.1_1424975_1425509_-	NA	NA|326aa|down_9|NC_013921.1_1425508_1426486_-	NA
GCF_000025645.1_ASM2564v1	NC_013921	Thermoanaerobacter italicus Ab9, complete sequence	4	2330986-2331286	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b1	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	Type I-B	GTTTCAATTCCTCATAGGTAGGCTAAAAAC,GTTTCAATTCCTCATAGGTAGGCTAAAAAC,GTTTTTAGCCTACCTATGAGGAATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	4,4,3	4	TypeI-B	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	NA|197aa|up_1|NC_013921.1_2328341_2328932_-,NA	NA|419aa|up_9|NC_013921.1_2320038_2321295_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|147aa|up_8|NC_013921.1_2321307_2321748_-	PRK04435, PRK04435, ACT domain-containing protein	NA|473aa|up_7|NC_013921.1_2322387_2323806_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|472aa|up_6|NC_013921.1_2323961_2325377_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|260aa|up_5|NC_013921.1_2325413_2326193_-	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	cas2|88aa|up_4|NC_013921.1_2326515_2326779_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|up_3|NC_013921.1_2326795_2327788_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|166aa|up_2|NC_013921.1_2327784_2328282_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|197aa|up_1|NC_013921.1_2328341_2328932_-	NA	NA|348aa|up_0|NC_013921.1_2329079_2330123_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|407aa|down_0|NC_013921.1_2331609_2332830_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas3|786aa|down_1|NC_013921.1_2334385_2336743_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|238aa|down_2|NC_013921.1_2336726_2337440_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|305aa|down_3|NC_013921.1_2337452_2338367_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|593aa|down_4|NC_013921.1_2338350_2340129_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	NA|424aa|down_5|NC_013921.1_2343963_2345235_+	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|138aa|down_6|NC_013921.1_2345275_2345689_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|410aa|down_7|NC_013921.1_2345685_2346915_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|350aa|down_8|NC_013921.1_2346911_2347961_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|468aa|down_9|NC_013921.1_2347971_2349375_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB
GCF_000025645.1_ASM2564v1	NC_013921	Thermoanaerobacter italicus Ab9, complete sequence	5	2332916-2334204	5,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b1	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	Type I-B	GTTTCAATTCCTCATAGGTAGGCTAAAAAC,GTTTCAATTCCTCATAGGTAGGCTAAAAAC,GTTTTTAGCCTACCTATGAGGAATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	19,19,18	19	TypeI-B	RT,cmr1gr7,csx1,cmr4gr7,cmr5gr11,cmr6gr7,cas10,cmr3gr5,csa3,DEDDh,cas3,Cas14b_CAS-V-F,cas4,cas2,cas1,cas5,cas7,cas8b1	NA|197aa|up_2|NC_013921.1_2328341_2328932_-,NA	NA|147aa|up_9|NC_013921.1_2321307_2321748_-	PRK04435, PRK04435, ACT domain-containing protein	NA|473aa|up_8|NC_013921.1_2322387_2323806_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|472aa|up_7|NC_013921.1_2323961_2325377_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|260aa|up_6|NC_013921.1_2325413_2326193_-	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	cas2|88aa|up_5|NC_013921.1_2326515_2326779_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|up_4|NC_013921.1_2326795_2327788_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|166aa|up_3|NC_013921.1_2327784_2328282_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|197aa|up_2|NC_013921.1_2328341_2328932_-	NA	NA|348aa|up_1|NC_013921.1_2329079_2330123_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|407aa|up_0|NC_013921.1_2331609_2332830_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas3|786aa|down_0|NC_013921.1_2334385_2336743_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|238aa|down_1|NC_013921.1_2336726_2337440_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|305aa|down_2|NC_013921.1_2337452_2338367_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|593aa|down_3|NC_013921.1_2338350_2340129_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	NA|424aa|down_4|NC_013921.1_2343963_2345235_+	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|138aa|down_5|NC_013921.1_2345275_2345689_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|410aa|down_6|NC_013921.1_2345685_2346915_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|350aa|down_7|NC_013921.1_2346911_2347961_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|468aa|down_8|NC_013921.1_2347971_2349375_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|249aa|down_9|NC_013921.1_2349394_2350141_-	TIGR01978, Probable_ATP-dependent_transporter_SufC, FeS assembly ATPase SufC
