assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000026665.1_ASM2666v1	NC_011900	Streptococcus pneumoniae ATCC 700669, complete genome	1	103346-103441	1	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Orphan	AATGTGTAAGATTTTTATATATAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|74aa|up_9|NC_011900.1_93836_94058_+,NA|71aa|down_3|NC_011900.1_109247_109460_-,NA|107aa|down_8|NC_011900.1_112597_112918_-	NA|74aa|up_9|NC_011900.1_93836_94058_+	NA	NA|310aa|up_8|NC_011900.1_94376_95306_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_7|NC_011900.1_95319_96243_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|492aa|up_6|NC_011900.1_96452_97928_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|329aa|up_5|NC_011900.1_98199_99186_+	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|287aa|up_4|NC_011900.1_99459_100320_+	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|355aa|up_3|NC_011900.1_100391_101456_-	pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal region	NA|304aa|up_2|NC_011900.1_101517_102429_-	pfam13349, DUF4097, Putative adhesin	NA|198aa|up_1|NC_011900.1_102421_103015_-	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|109aa|up_0|NC_011900.1_103001_103328_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|386aa|down_0|NC_011900.1_104689_105847_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|617aa|down_1|NC_011900.1_105888_107739_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|419aa|down_2|NC_011900.1_107778_109035_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|71aa|down_3|NC_011900.1_109247_109460_-	NA	NA|211aa|down_4|NC_011900.1_109509_110142_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|291aa|down_5|NC_011900.1_110163_111036_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|224aa|down_6|NC_011900.1_111044_111716_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|196aa|down_7|NC_011900.1_111957_112545_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|107aa|down_8|NC_011900.1_112597_112918_-	NA	NA|96aa|down_9|NC_011900.1_113348_113636_+	TIGR01653, hypothetical_protein, bacteriocin, lactococcin 972 family
GCF_000026665.1_ASM2666v1	NC_011900	Streptococcus pneumoniae ATCC 700669, complete genome	2	1030935-1031047	2	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Orphan	ACAACAGGAGTAGATGAAAATGGAAACTTGATTGA	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|393aa|up_1|NC_011900.1_1022370_1023549_+,NA	NA|124aa|up_9|NC_011900.1_1010022_1010394_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|110aa|up_8|NC_011900.1_1010338_1010668_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|268aa|up_7|NC_011900.1_1010676_1011480_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|149aa|up_6|NC_011900.1_1011476_1011923_-	COG5506, COG5506, Uncharacterized conserved protein [Function unknown]	NA|435aa|up_5|NC_011900.1_1012086_1013391_+	PRK00077, eno, enolase; Provisional	NA|149aa|up_4|NC_011900.1_1013528_1013975_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|1092aa|up_3|NC_011900.1_1015233_1018509_+	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|1217aa|up_2|NC_011900.1_1018505_1022156_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|393aa|up_1|NC_011900.1_1022370_1023549_+	NA	NA|2160aa|up_0|NC_011900.1_1023757_1030237_+	pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase C-terminal region	NA|284aa|down_0|NC_011900.1_1035747_1036599_+	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|260aa|down_1|NC_011900.1_1036585_1037365_+	PRK00015, rnhB, ribonuclease HII; Validated	NA|517aa|down_2|NC_011900.1_1037380_1038931_+	cd01031, EriC, ClC chloride channel EriC	NA|357aa|down_3|NC_011900.1_1039514_1040585_+	PRK05084, xerS, site-specific tyrosine recombinase XerS; Reviewed	NA|330aa|down_4|NC_011900.1_1040649_1041639_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|562aa|down_5|NC_011900.1_1041702_1043388_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|348aa|down_6|NC_011900.1_1043451_1044495_-	PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional	NA|331aa|down_7|NC_011900.1_1044712_1045705_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|323aa|down_8|NC_011900.1_1045720_1046689_-	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	NA|454aa|down_9|NC_011900.1_1046842_1048204_-	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM
GCF_000026665.1_ASM2666v1	NC_011900	Streptococcus pneumoniae ATCC 700669, complete genome	3	1255168-1255250	3	CRISPRCasFinder	no	RT	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Unclear	TTCTGGTGTCTGCCACCGCTTGGCCCTTA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|58aa|up_8|NC_011900.1_1243237_1243411_-,NA|97aa|up_6|NC_011900.1_1244544_1244835_-,NA|95aa|up_5|NC_011900.1_1244848_1245133_-,NA|324aa|up_4|NC_011900.1_1245207_1246179_-,NA|137aa|up_1|NC_011900.1_1253979_1254390_-,NA|285aa|down_3|NC_011900.1_1260891_1261746_-,NA|81aa|down_4|NC_011900.1_1261762_1262005_-,NA|163aa|down_6|NC_011900.1_1263902_1264391_-,NA|100aa|down_7|NC_011900.1_1264380_1264680_-	NA|312aa|up_9|NC_011900.1_1242124_1243060_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|58aa|up_8|NC_011900.1_1243237_1243411_-	NA	NA|287aa|up_7|NC_011900.1_1243601_1244462_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|97aa|up_6|NC_011900.1_1244544_1244835_-	NA	NA|95aa|up_5|NC_011900.1_1244848_1245133_-	NA	NA|324aa|up_4|NC_011900.1_1245207_1246179_-	NA	RT|604aa|up_3|NC_011900.1_1246259_1248071_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|1766aa|up_2|NC_011900.1_1248634_1253932_-	COG4646, COG4646, DNA methylase [Transcription / DNA replication, recombination, and repair]	NA|137aa|up_1|NC_011900.1_1253979_1254390_-	NA	NA|189aa|up_0|NC_011900.1_1254541_1255108_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|938aa|down_0|NC_011900.1_1255345_1258159_-	pfam18013, Phage_lysozyme2, Phage tail lysozyme	NA|786aa|down_1|NC_011900.1_1258170_1260528_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|121aa|down_2|NC_011900.1_1260475_1260838_-	pfam12666, PrgI, PrgI family protein	NA|285aa|down_3|NC_011900.1_1260891_1261746_-	NA	NA|81aa|down_4|NC_011900.1_1261762_1262005_-	NA	NA|626aa|down_5|NC_011900.1_1262025_1263903_-	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer	NA|163aa|down_6|NC_011900.1_1263902_1264391_-	NA	NA|100aa|down_7|NC_011900.1_1264380_1264680_-	NA	NA|279aa|down_8|NC_011900.1_1264962_1265799_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|197aa|down_9|NC_011900.1_1265798_1266389_-	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin
GCF_000026665.1_ASM2666v1	NC_011900	Streptococcus pneumoniae ATCC 700669, complete genome	4	1462829-1462965	4	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Orphan	ACTTCTGGTGTCGGTACATTTGGTGTTGG	29	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA,NA|532aa|down_3|NC_011900.1_1470848_1472444_-	NA|120aa|up_9|NC_011900.1_1454873_1455233_-	PRK07252, PRK07252, S1 RNA-binding domain-containing protein	NA|467aa|up_8|NC_011900.1_1455234_1456635_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|80aa|up_7|NC_011900.1_1456929_1457169_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|157aa|up_6|NC_011900.1_1457200_1457671_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|97aa|up_5|NC_011900.1_1457682_1457973_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|449aa|up_4|NC_011900.1_1458125_1459472_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|122aa|up_3|NC_011900.1_1459487_1459853_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|396aa|up_2|NC_011900.1_1459845_1461033_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|163aa|up_1|NC_011900.1_1461029_1461518_-	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown]	NA|183aa|up_0|NC_011900.1_1461838_1462387_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|495aa|down_0|NC_011900.1_1468163_1469648_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|243aa|down_1|NC_011900.1_1469698_1470427_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|55aa|down_2|NC_011900.1_1470505_1470670_-	pfam13129, DUF3953, Protein of unknown function (DUF3953)	NA|532aa|down_3|NC_011900.1_1470848_1472444_-	NA	NA|137aa|down_4|NC_011900.1_1472455_1472866_-	PRK09218, PRK09218, peptide deformylase; Validated	NA|264aa|down_5|NC_011900.1_1472981_1473773_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|899aa|down_6|NC_011900.1_1473785_1476482_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|395aa|down_7|NC_011900.1_1476785_1477970_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|624aa|down_8|NC_011900.1_1478112_1479984_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|395aa|down_9|NC_011900.1_1479980_1481165_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional
GCF_000026665.1_ASM2666v1	NC_011900	Streptococcus pneumoniae ATCC 700669, complete genome	5	1721614-1725129	1	CRT	no		cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Orphan	ACTNGTNNNNGCTGANGCNGANGCACTNGTNNNNNN	36	43	994	1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721644-1721661|1721692-1721739|1721692-1721739|1721692-1721739|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1721842-1721859|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722034-1722051|1722082-1722123|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722154-1722171|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722202-1722219|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722322-1722345|1722376-1722411|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-1722459|1722442-172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011900.1_1730230-1730247|NC_011900.1_1730332-1730349|NC_011900.1_1730626-1730643|NC_011900.1_1730818-1730835|NC_011900.1_1731106-1731123|NC_011900.1_1731130-1731147|NC_011900.1_1731178-1731195|NC_011900.1_1731202-1731219|NC_011900.1_1731250-1731267|NC_011900.1_1731274-1731291|NC_011900.1_1731568-1731585|NC_011900.1_1732138-1732155|NC_011900.1_1732162-1732179|NC_011900.1_1732330-1732347|NC_011900.1_1732618-1732635|NC_011900.1_1732690-1732707|NC_011900.1_1733140-1733157|NC_011900.1_1725208-1725225|NC_011900.1_1726624-1726641|NC_011900.1_1726972-1726989|NC_011900.1_1728292-1728309|NC_011900.1_1728880-1728897|NC_011900.1_1730434-1730451|NC_011900.1_1731916-1731933|NC_011900.1_1732306-1732323|NC_011900.1_1732570-1732587|NC_011900.1_1732810-1732827|NC_011900.1_1732834-1732851|NC_011900.1_1725328-1725345|NC_011900.1_1725736-1725753|NC_011900.1_1725784-1725801|NC_011900.1_1727092-1727109|NC_011900.1_1727500-1727517|NC_011900.1_1727548-1727565|NC_011900.1_1729000-1729017|NC_011900.1_1729408-1729425|NC_011900.1_1729456-1729473|NC_011900.1_1730554-1730571|NC_011900.1_1730962-1730979|NC_011900.1_1731010-1731027|NC_011900.1_1732594-1732611|NC_011900.1_1732714-1732731|NC_011900.1_1733512-1733529|NC_011900.1_1726312-1726329|NC_011900.1_1726360-1726377|NC_011900.1_1726528-1726545|NC_011900.1_1728076-1728093|NC_011900.1_1728124-1728141|NC_011900.1_1728556-1728573|NC_011900.1_1730110-1730127|NC_011900.1_1732426-1732443|NC_011900.1_1733044-1733061|NC_011900.1_1732882-1732899|NC_011900.1_1731664-1731681|NC_011900.1_1725280-1725297|NC_011900.1_1726120-1726137|NC_011900.1_1726198-1726215|NC_011900.1_1726336-1726353|NC_011900.1_1726504-1726521|NC_011900.1_1727044-1727061|NC_011900.1_1727884-1727901|NC_011900.1_1727962-1727979|NC_011900.1_1728100-1728117|NC_011900.1_1728268-1728285|NC_011900.1_1728652-1728669|NC_011900.1_1728952-1728969|NC_011900.1_1729792-1729809|NC_011900.1_1729870-1729887|NC_011900.1_1730206-1730223|NC_011900.1_1730506-1730523|NC_011900.1_1731346-1731363|NC_011900.1_1731424-1731441|NC_011900.1_1731736-1731753|NC_011900.1_1731988-1732005|NC_011900.1_1732258-1732275|NC_011900.1_1733020-1733037|NC_011900.1_1733260-1733277|NC_011900.1_1733536-1733553|NC_011900.1_1734463-1734480|NC_011900.1_1732930-1732965|NC_011900.1_1732234-1732251|NC_011900.1_1726150-1726167|NC_011900.1_1726222-1726239|NC_011900.1_1726384-1726401|NC_011900.1_1726456-1726473|NC_011900.1_1726480-1726497|NC_011900.1_1727914-1727931|NC_011900.1_1727986-1728003|NC_011900.1_1728148-1728165|NC_011900.1_1728220-1728237|NC_011900.1_1728244-1728261|NC_011900.1_1729822-1729839|NC_011900.1_1729894-1729911|NC_011900.1_1731376-1731393|NC_011900.1_1731448-1731465|NC_011900.1_1731688-1731705|NC_011900.1_1731760-1731777|NC_011900.1_1732378-1732395|NC_011900.1_1732474-1732491|NC_011900.1_1733116-1733133|NC_011900.1_1733236-1733253|NC_011900.1_1725496-1725513|NC_011900.1_1725928-1725945|NC_011900.1_1727260-1727277|NC_011900.1_1727692-1727709|NC_011900.1_1729168-1729185|NC_011900.1_1729600-1729617|NC_011900.1_1730038-1730055|NC_011900.1_1730722-1730739|NC_011900.1_1731154-1731171|NC_011900.1_1731592-1731609|NC_011900.1_1732012-1732029|NC_011900.1_1732948-1732965|NC_011900.1_1732996-1733013|NC_011900.1_1733464-1733481|NC_011900.1_1732378-1732419|NC_011900.1_1726480-1726521|NC_011900.1_1728244-1728285|NC_011900.1_1732450-1732509|NC_011900.1_1726336-1726377|NC_011900.1_1728100-1728141|NC_011900.1_1726408-1726449|NC_011900.1_1728172-1728213|NC_011900.1_1726480-1726521|NC_011900.1_1728244-1728285|NC_011900.1_1732378-1732419|NC_011900.1_1726552-1726617|NC_011900.1_1728388-1728453|NC_011900.1_1726720-1726785|NC_011900.1_1726648-1726713|NC_011900.1_1728316-1728381|NC_011900.1_1728412-1728501|NC_011900.1_1728532-1728597|NC_011900.1_1728628-1728693|NC_011900.1_1730182-1730247|NC_011900.1_1726816-1726863|NC_011900.1_1728724-1728771|NC_011900.1_1730278-1730325	NA	53	53	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|197aa|up_3|NC_011900.1_1716895_1717486_-,NA|86aa|down_6|NC_011900.1_1737906_1738164_+,NA|49aa|down_9|NC_011900.1_1739826_1739973_-	NA|406aa|up_9|NC_011900.1_1707855_1709073_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|302aa|up_8|NC_011900.1_1709129_1710035_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|399aa|up_7|NC_011900.1_1710034_1711231_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|407aa|up_6|NC_011900.1_1711239_1712460_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|295aa|up_5|NC_011900.1_1712484_1713369_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|818aa|up_4|NC_011900.1_1713365_1715819_-	TIGR03728, glyco_access_1, glycosyltransferase, SP_1767 family	NA|197aa|up_3|NC_011900.1_1716895_1717486_-	NA	NA|93aa|up_2|NC_011900.1_1717493_1717772_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|405aa|up_1|NC_011900.1_1717776_1718991_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|695aa|up_0|NC_011900.1_1719297_1721382_-	COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]	NA|160aa|down_0|NC_011900.1_1735115_1735595_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|48aa|down_1|NC_011900.1_1735561_1735705_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|127aa|down_2|NC_011900.1_1735973_1736354_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|74aa|down_3|NC_011900.1_1736452_1736674_+	pfam15507, DUF4649, Domain of unknown function (DUF4649)	NA|105aa|down_4|NC_011900.1_1736690_1737005_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|178aa|down_5|NC_011900.1_1737311_1737845_+	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|86aa|down_6|NC_011900.1_1737906_1738164_+	NA	NA|223aa|down_7|NC_011900.1_1738188_1738857_-	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|264aa|down_8|NC_011900.1_1738967_1739759_-	pfam10978, DUF2785, Protein of unknown function (DUF2785)	NA|49aa|down_9|NC_011900.1_1739826_1739973_-	NA
GCF_000026665.1_ASM2666v1	NC_011900	Streptococcus pneumoniae ATCC 700669, complete genome	6	1758262-1758346	5	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	Orphan	CTTTTTTTGAAACGTTTCATTTTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,cas4,WYL,RT	NA|60aa|up_6|NC_011900.1_1750790_1750970_-,NA|80aa|up_5|NC_011900.1_1751134_1751374_-,NA	NA|157aa|up_9|NC_011900.1_1749224_1749695_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|151aa|up_8|NC_011900.1_1749985_1750438_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|60aa|up_7|NC_011900.1_1750474_1750654_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|60aa|up_6|NC_011900.1_1750790_1750970_-	NA	NA|80aa|up_5|NC_011900.1_1751134_1751374_-	NA	NA|424aa|up_4|NC_011900.1_1751643_1752915_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|440aa|up_3|NC_011900.1_1753459_1754779_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|539aa|up_2|NC_011900.1_1754788_1756405_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|297aa|up_1|NC_011900.1_1756433_1757324_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|306aa|up_0|NC_011900.1_1757334_1758252_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|334aa|down_0|NC_011900.1_1758402_1759404_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|494aa|down_1|NC_011900.1_1759765_1761247_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|55aa|down_2|NC_011900.1_1761689_1761854_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|189aa|down_3|NC_011900.1_1761937_1762504_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|57aa|down_4|NC_011900.1_1762515_1762686_+	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|203aa|down_5|NC_011900.1_1762724_1763333_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|68aa|down_6|NC_011900.1_1763363_1763567_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|96aa|down_7|NC_011900.1_1764258_1764546_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|257aa|down_8|NC_011900.1_1764823_1765594_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|283aa|down_9|NC_011900.1_1765608_1766457_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1
