The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_012488	Listeria monocytogenes serotype 4b str. CLIP 80459, complete genome	2912690	123376	129903	2912690	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003728215.1|123376_123829_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|123834_124170_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003724946.1|124386_124815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003724947.1|124826_125243_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.3e-20
WP_003728212.1|125522_125912_+	DUF5072 family protein	NA	NA	NA	NA	NA
WP_003721744.1|125924_126437_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|126484_126787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003740367.1|126828_127233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731178.1|127219_129088_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003724951.1|129084_129903_+|tail	phage tail family protein	tail	A0A2H4JAE4	uncultured_Caudovirales_phage	34.9	1.7e-40
>prophage 2
NC_012488	Listeria monocytogenes serotype 4b str. CLIP 80459, complete genome	2912690	1271928	1328780	2912690	protease,tRNA	Bacillus_virus(16.67%)	56	NA	NA
WP_003734523.1|1271928_1273068_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1273147_1273543_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1273693_1273909_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003727523.1|1274032_1274566_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003731300.1|1274581_1275247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003727521.1|1275508_1276447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1276561_1277845_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1278029_1279289_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003726393.1|1279407_1279974_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003726394.1|1280008_1280578_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003727520.1|1280679_1281222_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726396.1|1281231_1282095_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727519.1|1282091_1282877_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_012681270.1|1283010_1283871_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727517.1|1284143_1286222_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003726401.1|1286284_1287589_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003731303.1|1287871_1288774_+	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003724001.1|1288794_1289334_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003727514.1|1289347_1290757_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
WP_003726695.1|1290777_1291557_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003726696.1|1291659_1292079_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003724130.1|1292101_1292413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003726697.1|1292415_1293288_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003726698.1|1293329_1293926_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003727511.1|1294083_1294491_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003727510.1|1294671_1296639_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_003727509.1|1296635_1299095_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.8	1.1e-101
WP_003726814.1|1299177_1299645_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_009917681.1|1300272_1302093_+	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003727507.1|1302125_1304012_-	peptidoglycan O-acetyltransferase OatA	NA	B5WZU0	Pseudomonas_phage	32.2	3.8e-43
WP_003726657.1|1304224_1304923_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_003723738.1|1305155_1306832_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726658.1|1306958_1307876_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003719566.1|1307997_1308231_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_012681271.1|1308341_1309565_+	GTPase HflX	NA	NA	NA	NA	NA
WP_003727505.1|1309557_1310784_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_003719570.1|1310985_1311354_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723435.1|1311424_1312759_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003726564.1|1312902_1314198_+	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.6	2.5e-147
WP_003726565.1|1314231_1314756_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003723438.1|1314786_1315401_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003726566.1|1315557_1315887_+	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003726567.1|1315980_1316208_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_012681272.1|1316354_1318349_+	transketolase	NA	NA	NA	NA	NA
WP_003726667.1|1318569_1318809_+	YneF family protein	NA	NA	NA	NA	NA
WP_003726668.1|1318857_1319589_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726669.1|1319610_1320117_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_003727499.1|1320126_1321431_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.1	1.2e-133
WP_012681273.1|1321420_1322626_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	7.0e-91
WP_003727498.1|1322603_1322978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723449.1|1323270_1323999_+	UMP kinase	NA	NA	NA	NA	NA
WP_003723450.1|1323998_1324556_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003727497.1|1324786_1325545_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	4.4e-22
WP_003727496.1|1325558_1326347_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003726414.1|1326361_1327504_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003726415.1|1327517_1328780_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 3
NC_012488	Listeria monocytogenes serotype 4b str. CLIP 80459, complete genome	2912690	1824486	1832772	2912690		Prochlorococcus_phage(33.33%)	8	NA	NA
WP_003731569.1|1824486_1825053_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	38.5	2.8e-26
WP_003726210.1|1825049_1826099_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_012681342.1|1826117_1827545_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.9	1.4e-53
WP_003731570.1|1827529_1829749_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
WP_003726212.1|1829741_1830425_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1830428_1830674_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003726214.1|1830685_1831399_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.0e-40
WP_003729814.1|1831479_1832772_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 4
NC_012488	Listeria monocytogenes serotype 4b str. CLIP 80459, complete genome	2912690	2519266	2527111	2912690		Streptococcus_phage(50.0%)	7	NA	NA
WP_003725407.1|2519266_2520238_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003734495.1|2520245_2521214_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.6	1.8e-68
WP_003722606.1|2521215_2522091_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003725409.1|2522198_2523929_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.1	9.5e-174
WP_003741152.1|2523970_2525032_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_003725411.1|2525048_2526032_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003722610.1|2526151_2527111_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
