assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	1	478907-479007	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|70aa|up_8|NC_017331.1_470479_470689_-,NA|128aa|up_6|NC_017331.1_471513_471897_-,NA|34aa|up_0|NC_017331.1_478131_478233_+,NA|221aa|down_1|NC_017331.1_480097_480760_-	NA|84aa|up_9|NC_017331.1_470189_470441_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NC_017331.1_470479_470689_-	NA	NA|194aa|up_7|NC_017331.1_470866_471448_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NC_017331.1_471513_471897_-	NA	NA|209aa|up_5|NC_017331.1_472151_472778_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NC_017331.1_473222_474746_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NC_017331.1_474761_475331_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NC_017331.1_475822_476578_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NC_017331.1_476658_478047_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NC_017331.1_478131_478233_+	NA	NA|319aa|down_0|NC_017331.1_479023_479980_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NC_017331.1_480097_480760_-	NA	NA|136aa|down_2|NC_017331.1_480902_481310_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_017331.1_481822_482401_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_017331.1_482400_483669_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_017331.1_483706_485173_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_017331.1_485197_486739_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NC_017331.1_486806_488000_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NC_017331.1_488026_488227_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NC_017331.1_488724_488955_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	2	742680-742772	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|NC_017331.1_739163_739271_+,NA|169aa|down_4|NC_017331.1_746519_747026_+,NA|239aa|down_5|NC_017331.1_747187_747904_+	NA|313aa|up_9|NC_017331.1_733365_734304_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NC_017331.1_734514_735051_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NC_017331.1_735219_735696_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NC_017331.1_735735_737031_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NC_017331.1_737058_737580_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NC_017331.1_738078_739089_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NC_017331.1_739163_739271_+	NA	NA|139aa|up_2|NC_017331.1_739363_739780_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NC_017331.1_739776_741438_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NC_017331.1_741826_742462_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|296aa|down_0|NC_017331.1_742840_743728_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NC_017331.1_743875_744826_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NC_017331.1_744880_745600_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NC_017331.1_745583_746384_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NC_017331.1_746519_747026_+	NA	NA|239aa|down_5|NC_017331.1_747187_747904_+	NA	NA|263aa|down_6|NC_017331.1_748072_748861_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NC_017331.1_749111_749486_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NC_017331.1_750433_751363_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NC_017331.1_751557_751782_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	3	858425-858507	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|NC_017331.1_845025_845232_+,NA|34aa|down_1|NC_017331.1_859963_860065_+,NA|52aa|down_8|NC_017331.1_868244_868400_+	NA|69aa|up_9|NC_017331.1_845025_845232_+	NA	NA|237aa|up_8|NC_017331.1_845319_846030_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_017331.1_846013_847018_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_017331.1_847491_849432_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_017331.1_849702_851586_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_017331.1_851597_853379_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_017331.1_853600_854578_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_017331.1_854570_856085_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_017331.1_856324_857383_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_017331.1_857733_858276_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_017331.1_858955_859873_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_017331.1_859963_860065_+	NA	NA|502aa|down_2|NC_017331.1_860142_861648_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_017331.1_861988_862489_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_017331.1_862508_863375_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_017331.1_864175_864574_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_017331.1_864536_866642_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_017331.1_866759_867731_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_017331.1_868244_868400_+	NA	NA|324aa|down_9|NC_017331.1_868438_869410_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	4	899477-899557	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	899503-899531|899503-899531|899503-899531|899503-899531|899503-899531|899503-899531|899503-899531|899503-899531|899503-899531	NC_017331.1_440458-440430|NC_017331.1_1895278-1895250|NC_017331.1_318849-318821|NC_017331.1_948079-948107|NC_017331.1_1031044-1031072|NC_017331.1_1230858-1230830|NC_017331.1_1708672-1708700|NC_017331.1_2064179-2064207|NC_017331.1_2733129-2733101	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|NC_017331.1_890390_890495_+,NA|36aa|up_5|NC_017331.1_891927_892035_+,NA	NA|191aa|up_9|NC_017331.1_886831_887404_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_017331.1_887817_890349_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_017331.1_890390_890495_+	NA	NA|370aa|up_6|NC_017331.1_890663_891774_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_017331.1_891927_892035_+	NA	NA|280aa|up_4|NC_017331.1_892182_893022_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_017331.1_893195_893846_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_017331.1_893842_894079_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_017331.1_894347_896333_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_017331.1_896340_899187_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_017331.1_899793_900726_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_017331.1_900731_901571_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_017331.1_901578_902064_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_017331.1_902071_903511_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_017331.1_903577_904513_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_017331.1_905336_906248_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_017331.1_906244_907240_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_017331.1_907349_908294_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_017331.1_908866_909454_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_017331.1_909696_910599_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	5	948013-948094	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	948037-948070|948037-948070	NC_017331.1_1440414-1440381|NC_017331.1_1529567-1529600	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|194aa|up_9|NC_017331.1_941116_941698_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NC_017331.1_941770_942388_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NC_017331.1_942542_943037_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NC_017331.1_943435_943858_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NC_017331.1_944005_944722_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NC_017331.1_944804_945344_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NC_017331.1_945493_945814_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NC_017331.1_945957_946314_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NC_017331.1_946471_946852_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NC_017331.1_947030_947909_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NC_017331.1_948650_949037_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_017331.1_949029_949326_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_017331.1_949575_950601_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_017331.1_950593_951289_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_017331.1_951306_952128_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NC_017331.1_952271_953492_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NC_017331.1_953579_954308_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NC_017331.1_954331_955060_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_8|NC_017331.1_955234_955969_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_9|NC_017331.1_956118_956331_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	6	1145048-1145135	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA|45aa|down_0|NC_017331.1_1145144_1145279_-,NA|432aa|down_1|NC_017331.1_1145430_1146726_+	NA|224aa|up_9|NC_017331.1_1132838_1133510_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NC_017331.1_1133502_1135692_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NC_017331.1_1135670_1137155_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NC_017331.1_1137147_1138176_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NC_017331.1_1138178_1138745_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NC_017331.1_1138759_1140238_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NC_017331.1_1140259_1141507_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NC_017331.1_1141771_1142578_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NC_017331.1_1142570_1143971_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NC_017331.1_1143985_1144561_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NC_017331.1_1145144_1145279_-	NA	NA|432aa|down_1|NC_017331.1_1145430_1146726_+	NA	NA|391aa|down_2|NC_017331.1_1147150_1148323_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NC_017331.1_1148376_1148919_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NC_017331.1_1149072_1149339_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NC_017331.1_1149341_1151060_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NC_017331.1_1151296_1151530_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NC_017331.1_1151727_1153089_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NC_017331.1_1153085_1154105_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NC_017331.1_1154237_1154900_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	7	1225387-1225688	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGCAAGTTGGNGNGGNNCCNA	21	3	6	1225408-1225442|1225521-1225555|1225633-1225667|1225633-1225667|1225633-1225667|1225633-1225667	NC_017331.1_1225352-1225386|NC_017331.1_1225352-1225386|NC_017331.1_2170424-2170390|NC_017331.1_858407-858441|NC_017331.1_904975-904941|NC_017331.1_2847870-2847836	NA	5	5	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|56aa|up_6|NC_017331.1_1221124_1221292_+,NA|31aa|up_4|NC_017331.1_1222131_1222224_-,NA|169aa|up_2|NC_017331.1_1223256_1223763_+,NA|62aa|down_0|NC_017331.1_1225843_1226029_-,NA|78aa|down_1|NC_017331.1_1226650_1226884_-,NA|49aa|down_4|NC_017331.1_1230324_1230471_+	NA|267aa|up_9|NC_017331.1_1219101_1219902_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|NC_017331.1_1219913_1220501_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|NC_017331.1_1220493_1220997_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|NC_017331.1_1221124_1221292_+	NA	NA|110aa|up_5|NC_017331.1_1221485_1221815_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|31aa|up_4|NC_017331.1_1222131_1222224_-	NA	NA|134aa|up_3|NC_017331.1_1222183_1222585_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NC_017331.1_1223256_1223763_+	NA	NA|166aa|up_1|NC_017331.1_1224021_1224519_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NC_017331.1_1224672_1225023_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NC_017331.1_1225843_1226029_-	NA	NA|78aa|down_1|NC_017331.1_1226650_1226884_-	NA	NA|320aa|down_2|NC_017331.1_1227360_1228320_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|down_3|NC_017331.1_1228584_1229757_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|down_4|NC_017331.1_1230324_1230471_+	NA	NA|239aa|down_5|NC_017331.1_1231152_1231869_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_6|NC_017331.1_1231976_1232702_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_7|NC_017331.1_1232796_1233522_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_8|NC_017331.1_1233959_1234961_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_9|NC_017331.1_1234983_1235916_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	8	1230892-1230977	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1230922-1230947|1230922-1230947|1230922-1230947|1230922-1230947|1230922-1230947	NC_017331.1_318689-318714|NC_017331.1_867953-867978|NC_017331.1_904930-904905|NC_017331.1_867897-867922|NC_017331.1_868009-868034	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|31aa|up_9|NC_017331.1_1222131_1222224_-,NA|169aa|up_7|NC_017331.1_1223256_1223763_+,NA|62aa|up_4|NC_017331.1_1225843_1226029_-,NA|78aa|up_3|NC_017331.1_1226650_1226884_-,NA|49aa|up_0|NC_017331.1_1230324_1230471_+,NA|76aa|down_6|NC_017331.1_1237951_1238179_+	NA|31aa|up_9|NC_017331.1_1222131_1222224_-	NA	NA|134aa|up_8|NC_017331.1_1222183_1222585_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NC_017331.1_1223256_1223763_+	NA	NA|166aa|up_6|NC_017331.1_1224021_1224519_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NC_017331.1_1224672_1225023_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NC_017331.1_1225843_1226029_-	NA	NA|78aa|up_3|NC_017331.1_1226650_1226884_-	NA	NA|320aa|up_2|NC_017331.1_1227360_1228320_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|up_1|NC_017331.1_1228584_1229757_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|up_0|NC_017331.1_1230324_1230471_+	NA	NA|239aa|down_0|NC_017331.1_1231152_1231869_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NC_017331.1_1231976_1232702_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NC_017331.1_1232796_1233522_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NC_017331.1_1233959_1234961_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NC_017331.1_1234983_1235916_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NC_017331.1_1236087_1237644_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NC_017331.1_1237951_1238179_+	NA	NA|316aa|down_7|NC_017331.1_1238483_1239431_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NC_017331.1_1239679_1239868_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NC_017331.1_1240779_1240914_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	9	2417333-2417483	8	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|NC_017331.1_2412204_2412435_-,NA|364aa|up_0|NC_017331.1_2416223_2417315_+,NA|35aa|down_0|NC_017331.1_2417814_2417919_-,NA|31aa|down_2|NC_017331.1_2420030_2420123_+	NA|237aa|up_9|NC_017331.1_2407814_2408525_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_017331.1_2408645_2409089_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_017331.1_2409288_2409702_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_017331.1_2410159_2411533_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_017331.1_2412204_2412435_-	NA	NA|313aa|up_4|NC_017331.1_2412465_2413404_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_017331.1_2413838_2414504_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_017331.1_2414655_2414976_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NC_017331.1_2414977_2415958_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_017331.1_2416223_2417315_+	NA	NA|35aa|down_0|NC_017331.1_2417814_2417919_-	NA	NA|379aa|down_1|NC_017331.1_2418605_2419742_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NC_017331.1_2420030_2420123_+	NA	NA|286aa|down_3|NC_017331.1_2420827_2421685_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NC_017331.1_2421752_2422535_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NC_017331.1_2422766_2424572_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NC_017331.1_2425252_2426791_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NC_017331.1_2426825_2428958_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NC_017331.1_2428969_2429404_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NC_017331.1_2429403_2430510_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_000027045.1_ASM2704v1	NC_017331	Staphylococcus aureus subsp. aureus TW20, complete genome	10	2541496-2541689	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	17	2541519-2541551|2541519-2541551|2541519-2541551|2541519-2541551|2541519-2541551|2541519-2541551|2541575-2541610|2541575-2541610|2541575-2541610|2541575-2541610|2541575-2541610|2541634-2541666|2541634-2541666|2541634-2541666|2541634-2541666|2541634-2541666|2541634-2541666	NC_017331.1_1128768-1128800|NC_017331.1_1230911-1230879|NC_017331.1_1440368-1440336|NC_017331.1_1529613-1529645|NC_017331.1_2053435-2053467|NC_017331.1_2813571-2813603|NC_017331.1_1230858-1230823|NC_017331.1_1895278-1895243|NC_017331.1_318849-318814|NC_017331.1_1708672-1708707|NC_017331.1_2064179-2064214|NC_017331.1_904885-904917|NC_017331.1_1128768-1128800|NC_017331.1_1230911-1230879|NC_017331.1_1440368-1440336|NC_017331.1_2053435-2053467|NC_017331.1_2813571-2813603	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|NC_017331.1_2532023_2532188_+,NA|106aa|up_8|NC_017331.1_2532432_2532750_+,NA|84aa|up_5|NC_017331.1_2537874_2538126_+,NA|57aa|up_0|NC_017331.1_2541265_2541436_+,NA	NA|55aa|up_9|NC_017331.1_2532023_2532188_+	NA	NA|106aa|up_8|NC_017331.1_2532432_2532750_+	NA	NA|1056aa|up_7|NC_017331.1_2532936_2536104_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_017331.1_2536220_2537486_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_017331.1_2537874_2538126_+	NA	NA|255aa|up_4|NC_017331.1_2538117_2538882_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_017331.1_2539043_2539484_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_017331.1_2539476_2540688_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_017331.1_2540789_2541140_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NC_017331.1_2541265_2541436_+	NA	NA|341aa|down_0|NC_017331.1_2541830_2542853_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_017331.1_2542872_2543472_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_017331.1_2543478_2543712_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_017331.1_2543717_2544164_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_017331.1_2544177_2544663_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_017331.1_2544659_2545919_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_017331.1_2545981_2546476_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_017331.1_2546477_2546984_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_017331.1_2547014_2548019_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_017331.1_2548188_2548794_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
