assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000027225.1_ASM2722v1	NC_013892	Xenorhabdus bovienii SS-2004, complete genome	1	1439191-1439264	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ATTCTATCTTCAGCAATAAGTGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|185aa|up_4|NC_013892.1_1433914_1434469_-,NA|69aa|up_1|NC_013892.1_1435448_1435655_-,NA|167aa|up_0|NC_013892.1_1438251_1438752_+,NA|69aa|down_0|NC_013892.1_1441604_1441811_-,NA|521aa|down_1|NC_013892.1_1441967_1443530_-,NA|69aa|down_2|NC_013892.1_1444689_1444896_+,NA|498aa|down_5|NC_013892.1_1447578_1449072_-	NA|343aa|up_9|NC_013892.1_1429443_1430472_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|298aa|up_8|NC_013892.1_1430684_1431578_-	TIGR03760, ICE_TraI_Pfluor, integrating conjugative element relaxase, PFL_4751 family	NA|229aa|up_7|NC_013892.1_1431802_1432489_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|308aa|up_6|NC_013892.1_1432602_1433526_-	pfam06924, DUF1281, Protein of unknown function (DUF1281)	NA|99aa|up_5|NC_013892.1_1433618_1433915_-	pfam06755, CbtA_toxin, CbtA_toxin of type IV toxin-antitoxin system	NA|185aa|up_4|NC_013892.1_1433914_1434469_-	NA	NA|154aa|up_3|NC_013892.1_1434589_1435051_-	pfam03230, Antirestrict, Antirestriction protein	NA|145aa|up_2|NC_013892.1_1435063_1435498_-	pfam03230, Antirestrict, Antirestriction protein	NA|69aa|up_1|NC_013892.1_1435448_1435655_-	NA	NA|167aa|up_0|NC_013892.1_1438251_1438752_+	NA	NA|69aa|down_0|NC_013892.1_1441604_1441811_-	NA	NA|521aa|down_1|NC_013892.1_1441967_1443530_-	NA	NA|69aa|down_2|NC_013892.1_1444689_1444896_+	NA	NA|335aa|down_3|NC_013892.1_1444921_1445926_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|529aa|down_4|NC_013892.1_1445992_1447579_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|498aa|down_5|NC_013892.1_1447578_1449072_-	NA	NA|1133aa|down_6|NC_013892.1_1449055_1452454_-	pfam13087, AAA_12, AAA domain	NA|472aa|down_7|NC_013892.1_1452460_1453876_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|231aa|down_8|NC_013892.1_1453881_1454574_-	pfam13672, PP2C_2, Protein phosphatase 2C	NA|224aa|down_9|NC_013892.1_1454573_1455245_-	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
GCF_000027225.1_ASM2722v1	NC_013892	Xenorhabdus bovienii SS-2004, complete genome	2	1500125-1500200	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	ACGTGGGGCTCTCCTACCGCCAC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|231aa|up_7|NC_013892.1_1493479_1494172_+,NA|329aa|down_0|NC_013892.1_1500532_1501519_+,NA|70aa|down_2|NC_013892.1_1502140_1502350_-,NA|67aa|down_4|NC_013892.1_1502917_1503118_+,NA|86aa|down_8|NC_013892.1_1507657_1507915_-	NA|79aa|up_9|NC_013892.1_1492767_1493004_-	pfam11660, DUF3262, Protein of unknown function (DUF3262)	NA|110aa|up_8|NC_013892.1_1493000_1493330_-	pfam09686, Plasmid_RAQPRD, Plasmid protein of unknown function (Plasmid_RAQPRD)	NA|231aa|up_7|NC_013892.1_1493479_1494172_+	NA	NA|253aa|up_6|NC_013892.1_1494259_1495018_-	TIGR03747, conj_TIGR03747, integrating conjugative element membrane protein, PFL_4697 family	NA|688aa|up_5|NC_013892.1_1495027_1497091_-	TIGR03754, conj_TOL_TraD, conjugative coupling factor TraD, TOL family	NA|181aa|up_4|NC_013892.1_1497087_1497630_-	pfam11072, DUF2859, Protein of unknown function (DUF2859)	NA|232aa|up_3|NC_013892.1_1497611_1498307_-	TIGR03759, conj_TIGR03759, integrating conjugative element protein, PFL_4693 family	NA|179aa|up_2|NC_013892.1_1498303_1498840_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|93aa|up_1|NC_013892.1_1498945_1499224_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|156aa|up_0|NC_013892.1_1499570_1500038_-	cd17493, toxin_TenpN, type III toxin-antitoxin system toxin TenpN and similar proteins	NA|329aa|down_0|NC_013892.1_1500532_1501519_+	NA	NA|170aa|down_1|NC_013892.1_1501613_1502123_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|70aa|down_2|NC_013892.1_1502140_1502350_-	NA	NA|155aa|down_3|NC_013892.1_1502420_1502885_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|67aa|down_4|NC_013892.1_1502917_1503118_+	NA	NA|665aa|down_5|NC_013892.1_1503161_1505156_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|242aa|down_6|NC_013892.1_1505157_1505883_-	pfam08900, DUF1845, Domain of unknown function (DUF1845)	NA|408aa|down_7|NC_013892.1_1506338_1507562_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|86aa|down_8|NC_013892.1_1507657_1507915_-	NA	NA|194aa|down_9|NC_013892.1_1507935_1508517_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)
GCF_000027225.1_ASM2722v1	NC_013892	Xenorhabdus bovienii SS-2004, complete genome	3	1506117-1506276	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TAGATTTTCAGACTTGCCTGCCTCAAACAAGGCAGTACAATTTTTAGTCGCCT	53	1	2	1506170-1506223|1506170-1506223	NC_013892.1_3291107-3291054|NC_013892.1_3291214-3291161	NA	1	1	Orphan	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|329aa|up_6|NC_013892.1_1500532_1501519_+,NA|70aa|up_4|NC_013892.1_1502140_1502350_-,NA|67aa|up_2|NC_013892.1_1502917_1503118_+,NA|86aa|down_1|NC_013892.1_1507657_1507915_-,NA|126aa|down_5|NC_013892.1_1511537_1511915_-	NA|179aa|up_9|NC_013892.1_1498303_1498840_-	TIGR03748, conj_PilL, conjugative transfer region protein, TIGR03748 family	NA|93aa|up_8|NC_013892.1_1498945_1499224_-	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|156aa|up_7|NC_013892.1_1499570_1500038_-	cd17493, toxin_TenpN, type III toxin-antitoxin system toxin TenpN and similar proteins	NA|329aa|up_6|NC_013892.1_1500532_1501519_+	NA	NA|170aa|up_5|NC_013892.1_1501613_1502123_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|70aa|up_4|NC_013892.1_1502140_1502350_-	NA	NA|155aa|up_3|NC_013892.1_1502420_1502885_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|67aa|up_2|NC_013892.1_1502917_1503118_+	NA	NA|665aa|up_1|NC_013892.1_1503161_1505156_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|242aa|up_0|NC_013892.1_1505157_1505883_-	pfam08900, DUF1845, Domain of unknown function (DUF1845)	NA|408aa|down_0|NC_013892.1_1506338_1507562_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|86aa|down_1|NC_013892.1_1507657_1507915_-	NA	NA|194aa|down_2|NC_013892.1_1507935_1508517_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|526aa|down_3|NC_013892.1_1508597_1510175_-	TIGR03764, ICE_PFGI_1_parB, integrating conjugative element, PFGI_1 class, ParB family protein	NA|460aa|down_4|NC_013892.1_1510174_1511554_-	TIGR00665, DnaB, replicative DNA helicase	NA|126aa|down_5|NC_013892.1_1511537_1511915_-	NA	NA|296aa|down_6|NC_013892.1_1511911_1512799_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|336aa|down_7|NC_013892.1_1513286_1514294_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|502aa|down_8|NC_013892.1_1514404_1515910_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|107aa|down_9|NC_013892.1_1515980_1516301_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein
GCF_000027225.1_ASM2722v1	NC_013892	Xenorhabdus bovienii SS-2004, complete genome	4	3619469-3620474	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no		cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CGGTTTATCCCCGTACCTANCGGGGAACAC,GGTTTATCCCCGTACCTACGGGGAACAC,CGGTTTATCCCCGTACCTACGGGGAACAC	30,28,29	2	2	3619743-3619774|3619749-3619781	NC_013892.1_31397-31366|NC_013892.1_31397-31365	NA:NA:NA	16,16,15	16	Orphan	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|416aa|up_9|NC_013892.1_3607029_3608277_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|366aa|up_8|NC_013892.1_3608989_3610087_+	PRK11162, mltA, murein transglycosylase A; Provisional	NA|271aa|up_7|NC_013892.1_3610198_3611011_+	PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional	NA|153aa|up_6|NC_013892.1_3611032_3611491_-	TIGR03391, FeS_syn_CsdE, cysteine desulfurase, sulfur acceptor subunit CsdE	NA|402aa|up_5|NC_013892.1_3611540_3612746_-	PRK10874, PRK10874, cysteine desulfurase CsdA	NA|260aa|up_4|NC_013892.1_3613733_3614513_+	PRK10356, PRK10356, protein bax	NA|232aa|up_3|NC_013892.1_3614611_3615306_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|474aa|up_2|NC_013892.1_3615662_3617084_+	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane]	NA|379aa|up_1|NC_013892.1_3617070_3618207_+	cd01829, SGNH_hydrolase_peri2, SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases	NA|405aa|up_0|NC_013892.1_3618193_3619408_+	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases	NA|447aa|down_0|NC_013892.1_3620702_3622043_-	PRK10472, PRK10472, low affinity gluconate transporter; Provisional	NA|180aa|down_1|NC_013892.1_3622039_3622579_-	PRK11545, gntK, gluconokinase	NA|332aa|down_2|NC_013892.1_3622800_3623796_-	PRK14987, PRK14987, HTH-type transcriptional regulator GntR	NA|324aa|down_3|NC_013892.1_3623942_3624914_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|437aa|down_4|NC_013892.1_3624960_3626271_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|114aa|down_5|NC_013892.1_3626282_3626624_-	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|437aa|down_6|NC_013892.1_3626652_3627963_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|102aa|down_7|NC_013892.1_3627990_3628296_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|203aa|down_8|NC_013892.1_3629476_3630085_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|400aa|down_9|NC_013892.1_3630579_3631779_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_000027225.1_ASM2722v1	NC_013892	Xenorhabdus bovienii SS-2004, complete genome	5	3628576-3628909	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	CGGTTTATCCCCGTACCTACGGGGAACAC,GTGTTCCCCGTAGGTACGGGGATAAACCG,GTGTTCCCCGTAGGTACGGGGATAAACCG	29,29,29	0	0	NA	NA	NA:NA:NA	5,5,5	5	TypeI-E	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|379aa|up_9|NC_013892.1_3617070_3618207_+	cd01829, SGNH_hydrolase_peri2, SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases	NA|405aa|up_8|NC_013892.1_3618193_3619408_+	cd01825, SGNH_hydrolase_peri1, SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases	NA|447aa|up_7|NC_013892.1_3620702_3622043_-	PRK10472, PRK10472, low affinity gluconate transporter; Provisional	NA|180aa|up_6|NC_013892.1_3622039_3622579_-	PRK11545, gntK, gluconokinase	NA|332aa|up_5|NC_013892.1_3622800_3623796_-	PRK14987, PRK14987, HTH-type transcriptional regulator GntR	NA|324aa|up_4|NC_013892.1_3623942_3624914_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|437aa|up_3|NC_013892.1_3624960_3626271_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|114aa|up_2|NC_013892.1_3626282_3626624_-	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit	NA|437aa|up_1|NC_013892.1_3626652_3627963_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|102aa|up_0|NC_013892.1_3627990_3628296_-	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|203aa|down_0|NC_013892.1_3629476_3630085_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|400aa|down_1|NC_013892.1_3630579_3631779_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|60aa|down_2|NC_013892.1_3631852_3632032_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|282aa|down_3|NC_013892.1_3632183_3633028_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|203aa|down_4|NC_013892.1_3634571_3635180_-	pfam02525, Flavodoxin_2, Flavodoxin-like fold	NA|206aa|down_5|NC_013892.1_3635272_3635890_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|282aa|down_6|NC_013892.1_3636173_3637018_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|129aa|down_7|NC_013892.1_3637304_3637691_+	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	cas3|916aa|down_8|NC_013892.1_3637755_3640503_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|534aa|down_9|NC_013892.1_3640502_3642104_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1
GCF_000027225.1_ASM2722v1	NC_013892	Xenorhabdus bovienii SS-2004, complete genome	6	3646437-3646891	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	CGGTTTATCCCCGTACCTACGGGGAACAC,GTGTTCCCCGTAGGTACGGGGATAAACCG,GTGTTCCCCGTAGGTACGGGGATAAACCG	29,29,29	0	0	NA	NA	NA:NA:NA	7,7,7	7	TypeI-E	cas3,DEDDh,DinG,RT,WYL,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|340aa|down_0|NC_013892.1_3647081_3648101_+	NA|282aa|up_9|NC_013892.1_3636173_3637018_+	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|129aa|up_8|NC_013892.1_3637304_3637691_+	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	cas3|916aa|up_7|NC_013892.1_3637755_3640503_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|534aa|up_6|NC_013892.1_3640502_3642104_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|184aa|up_5|NC_013892.1_3642096_3642648_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|346aa|up_4|NC_013892.1_3642675_3643713_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|251aa|up_3|NC_013892.1_3643725_3644478_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|225aa|up_2|NC_013892.1_3644464_3645139_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|307aa|up_1|NC_013892.1_3645138_3646059_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NC_013892.1_3646060_3646354_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|340aa|down_0|NC_013892.1_3647081_3648101_+	NA	NA|384aa|down_1|NC_013892.1_3648100_3649252_+	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	NA|376aa|down_2|NC_013892.1_3649260_3650388_+	pfam13265, DUF4056, Protein of unknown function (DUF4056)	NA|158aa|down_3|NC_013892.1_3650455_3650929_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|373aa|down_4|NC_013892.1_3651271_3652390_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|297aa|down_5|NC_013892.1_3652658_3653549_+	cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|570aa|down_6|NC_013892.1_3653602_3655312_-	cd08649, FMT_core_NRPS_like, N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin	NA|335aa|down_7|NC_013892.1_3655390_3656395_-	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|620aa|down_8|NC_013892.1_3656331_3658191_-	cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)	NA|277aa|down_9|NC_013892.1_3658229_3659060_-	pfam00733, Asn_synthase, Asparagine synthase
