assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	1	1897862-1898079	1	CRISPRCasFinder	no	cas3	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Unclear	ATAATAATATAAAAGATATATCT	23	0	0	NA	NA	NA	3	3	Unclear	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA,NA|158aa|down_9|NC_009495.1_1910496_1910970_-	NA|70aa|up_9|NC_009495.1_1880093_1880303_+	pfam00313, CSD, 'Cold-shock' DNA-binding domain	NA|668aa|up_8|NC_009495.1_1880678_1882682_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|527aa|up_7|NC_009495.1_1882962_1884543_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|153aa|up_6|NC_009495.1_1884881_1885340_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|285aa|up_5|NC_009495.1_1885910_1886765_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|298aa|up_4|NC_009495.1_1886904_1887798_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|422aa|up_3|NC_009495.1_1888166_1889432_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|279aa|up_2|NC_009495.1_1889754_1890591_+	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]	cas3|482aa|up_1|NC_009495.1_1890769_1892215_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|1486aa|up_0|NC_009495.1_1892368_1896826_+	pfam16472, DUF5050, Domain of unknown function (DUF5050)	NA|310aa|down_0|NC_009495.1_1901709_1902639_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|172aa|down_1|NC_009495.1_1902764_1903280_-	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|285aa|down_2|NC_009495.1_1903684_1904539_+	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|154aa|down_3|NC_009495.1_1904538_1905000_+	COG1406, COG1406, Predicted inhibitor of MCP methylation, homolog of CheC [Cell motility and secretion]	NA|453aa|down_4|NC_009495.1_1905182_1906541_-	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|68aa|down_5|NC_009495.1_1907278_1907482_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|67aa|down_6|NC_009495.1_1907542_1907743_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|110aa|down_7|NC_009495.1_1907946_1908276_-	TIGR01911, conserved_protein, HesB-like selenoprotein	NA|327aa|down_8|NC_009495.1_1909193_1910174_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|158aa|down_9|NC_009495.1_1910496_1910970_-	NA
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	2	2302049-2302408	2,1	CRISPRCasFinder,CRT	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-D,Type III-B, Type III-C?,Type III-C	ATTTAAATACATCTCATGTTAATGTTCAAC,ATTTAAATACATCTNATGTTAATGTTCAAC	30,30	0	0	NA	NA	III-B:III-B	5,5	5	TypeIII-A,TypeIII-D,TypeIII-B,TypeIII-C?,TypeIII-C	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA|135aa|up_3|NC_009495.1_2298190_2298595_-,NA|165aa|down_0|NC_009495.1_2302698_2303193_-	NA|118aa|up_9|NC_009495.1_2292104_2292458_-	pfam17032, zinc_ribbon_15, zinc-ribbon family	NA|698aa|up_8|NC_009495.1_2292783_2294877_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|455aa|up_7|NC_009495.1_2295088_2296453_-	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	NA|95aa|up_6|NC_009495.1_2296465_2296750_-	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|146aa|up_5|NC_009495.1_2296778_2297216_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|239aa|up_4|NC_009495.1_2297239_2297956_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|135aa|up_3|NC_009495.1_2298190_2298595_-	NA	NA|245aa|up_2|NC_009495.1_2298932_2299667_-	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	NA|198aa|up_1|NC_009495.1_2300006_2300600_-	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase	NA|163aa|up_0|NC_009495.1_2301427_2301916_+	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]	NA|165aa|down_0|NC_009495.1_2302698_2303193_-	NA	NA|205aa|down_1|NC_009495.1_2303235_2303850_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|121aa|down_2|NC_009495.1_2304164_2304527_+	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain	NA|58aa|down_3|NC_009495.1_2304610_2304784_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|469aa|down_4|NC_009495.1_2304857_2306264_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|247aa|down_5|NC_009495.1_2306366_2307107_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|297aa|down_6|NC_009495.1_2307113_2308004_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|174aa|down_7|NC_009495.1_2308304_2308826_+	pfam16107, DUF4825, Domain of unknown function (DUF4825)	NA|666aa|down_8|NC_009495.1_2310724_2312722_-	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|266aa|down_9|NC_009495.1_2312818_2313616_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	3	2309045-2309340	3,2,1	CRISPRCasFinder,CRT,PILER-CR	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-B,Type III-C,Type III-D	ATTTAAATACATCTCATGTTAATGTTCAAC,ATTTAAATACATCTCATGTTAATGTTCAAC,ATTTAAATACATCTCATGTTAATGTTCAAC	30,30,30	0	0	NA	NA	III-B:III-B:III-B	4,4,3	4	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA|165aa|up_7|NC_009495.1_2302698_2303193_-,NA|98aa|down_2|NC_009495.1_2313663_2313957_-,NA|113aa|down_3|NC_009495.1_2314148_2314487_-,cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA|198aa|up_9|NC_009495.1_2300006_2300600_-	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase	NA|163aa|up_8|NC_009495.1_2301427_2301916_+	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]	NA|165aa|up_7|NC_009495.1_2302698_2303193_-	NA	NA|205aa|up_6|NC_009495.1_2303235_2303850_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|121aa|up_5|NC_009495.1_2304164_2304527_+	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain	NA|58aa|up_4|NC_009495.1_2304610_2304784_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|469aa|up_3|NC_009495.1_2304857_2306264_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|247aa|up_2|NC_009495.1_2306366_2307107_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|297aa|up_1|NC_009495.1_2307113_2308004_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|174aa|up_0|NC_009495.1_2308304_2308826_+	pfam16107, DUF4825, Domain of unknown function (DUF4825)	NA|666aa|down_0|NC_009495.1_2310724_2312722_-	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|266aa|down_1|NC_009495.1_2312818_2313616_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|98aa|down_2|NC_009495.1_2313663_2313957_-	NA	NA|113aa|down_3|NC_009495.1_2314148_2314487_-	NA	cmr6gr7|298aa|down_4|NC_009495.1_2314498_2315392_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|145aa|down_5|NC_009495.1_2315403_2315838_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|280aa|down_6|NC_009495.1_2315865_2316705_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|400aa|down_7|NC_009495.1_2316716_2317916_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|571aa|down_8|NC_009495.1_2317932_2319645_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	4	2309620-2309716	4	CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-B,Type III-C,Type III-D	ATTTAAATACATCTCATGTTAATGTTCAAC	30	0	0	NA	NA	III-B	1	1	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA|165aa|up_7|NC_009495.1_2302698_2303193_-,NA|98aa|down_2|NC_009495.1_2313663_2313957_-,NA|113aa|down_3|NC_009495.1_2314148_2314487_-,cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA|198aa|up_9|NC_009495.1_2300006_2300600_-	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase	NA|163aa|up_8|NC_009495.1_2301427_2301916_+	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]	NA|165aa|up_7|NC_009495.1_2302698_2303193_-	NA	NA|205aa|up_6|NC_009495.1_2303235_2303850_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|121aa|up_5|NC_009495.1_2304164_2304527_+	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain	NA|58aa|up_4|NC_009495.1_2304610_2304784_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|469aa|up_3|NC_009495.1_2304857_2306264_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|247aa|up_2|NC_009495.1_2306366_2307107_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|297aa|up_1|NC_009495.1_2307113_2308004_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|174aa|up_0|NC_009495.1_2308304_2308826_+	pfam16107, DUF4825, Domain of unknown function (DUF4825)	NA|666aa|down_0|NC_009495.1_2310724_2312722_-	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|266aa|down_1|NC_009495.1_2312818_2313616_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|98aa|down_2|NC_009495.1_2313663_2313957_-	NA	NA|113aa|down_3|NC_009495.1_2314148_2314487_-	NA	cmr6gr7|298aa|down_4|NC_009495.1_2314498_2315392_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|145aa|down_5|NC_009495.1_2315403_2315838_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|280aa|down_6|NC_009495.1_2315865_2316705_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|400aa|down_7|NC_009495.1_2316716_2317916_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|571aa|down_8|NC_009495.1_2317932_2319645_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	5	2309834-2310065	5	CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-B,Type III-C,Type III-D	ATTTAAATACATCTCATGTTAATGTTCAAC	30	0	0	NA	NA	III-B	3	3	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA|165aa|up_7|NC_009495.1_2302698_2303193_-,NA|98aa|down_2|NC_009495.1_2313663_2313957_-,NA|113aa|down_3|NC_009495.1_2314148_2314487_-,cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA|198aa|up_9|NC_009495.1_2300006_2300600_-	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase	NA|163aa|up_8|NC_009495.1_2301427_2301916_+	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]	NA|165aa|up_7|NC_009495.1_2302698_2303193_-	NA	NA|205aa|up_6|NC_009495.1_2303235_2303850_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|121aa|up_5|NC_009495.1_2304164_2304527_+	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain	NA|58aa|up_4|NC_009495.1_2304610_2304784_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|469aa|up_3|NC_009495.1_2304857_2306264_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|247aa|up_2|NC_009495.1_2306366_2307107_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|297aa|up_1|NC_009495.1_2307113_2308004_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|174aa|up_0|NC_009495.1_2308304_2308826_+	pfam16107, DUF4825, Domain of unknown function (DUF4825)	NA|666aa|down_0|NC_009495.1_2310724_2312722_-	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|266aa|down_1|NC_009495.1_2312818_2313616_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|98aa|down_2|NC_009495.1_2313663_2313957_-	NA	NA|113aa|down_3|NC_009495.1_2314148_2314487_-	NA	cmr6gr7|298aa|down_4|NC_009495.1_2314498_2315392_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|145aa|down_5|NC_009495.1_2315403_2315838_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|280aa|down_6|NC_009495.1_2315865_2316705_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|400aa|down_7|NC_009495.1_2316716_2317916_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|571aa|down_8|NC_009495.1_2317932_2319645_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	6	2310339-2310434	6	CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-B,Type III-C,Type III-D	ATTTAAATACATCTCATGTTAATGTTCAAC	30	0	0	NA	NA	III-B	1	1	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA|165aa|up_7|NC_009495.1_2302698_2303193_-,NA|98aa|down_2|NC_009495.1_2313663_2313957_-,NA|113aa|down_3|NC_009495.1_2314148_2314487_-,cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA|198aa|up_9|NC_009495.1_2300006_2300600_-	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase	NA|163aa|up_8|NC_009495.1_2301427_2301916_+	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]	NA|165aa|up_7|NC_009495.1_2302698_2303193_-	NA	NA|205aa|up_6|NC_009495.1_2303235_2303850_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|121aa|up_5|NC_009495.1_2304164_2304527_+	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain	NA|58aa|up_4|NC_009495.1_2304610_2304784_+	cd01085, APP, X-Prolyl Aminopeptidase 2	NA|469aa|up_3|NC_009495.1_2304857_2306264_+	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|247aa|up_2|NC_009495.1_2306366_2307107_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|297aa|up_1|NC_009495.1_2307113_2308004_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|174aa|up_0|NC_009495.1_2308304_2308826_+	pfam16107, DUF4825, Domain of unknown function (DUF4825)	NA|666aa|down_0|NC_009495.1_2310724_2312722_-	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|266aa|down_1|NC_009495.1_2312818_2313616_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|98aa|down_2|NC_009495.1_2313663_2313957_-	NA	NA|113aa|down_3|NC_009495.1_2314148_2314487_-	NA	cmr6gr7|298aa|down_4|NC_009495.1_2314498_2315392_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|145aa|down_5|NC_009495.1_2315403_2315838_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|280aa|down_6|NC_009495.1_2315865_2316705_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|400aa|down_7|NC_009495.1_2316716_2317916_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|571aa|down_8|NC_009495.1_2317932_2319645_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|396aa|down_9|NC_009495.1_2319645_2320833_-	NA
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	7	2323921-2324079	7	CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-B,Type III-C,Type III-D	ATTTAAATACATCTCATGTTAATGTTCAAC	30	0	0	NA	NA	III-B	2	2	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA|113aa|up_9|NC_009495.1_2314148_2314487_-,cmr1gr7|396aa|up_3|NC_009495.1_2319645_2320833_-,NA|125aa|up_1|NC_009495.1_2322600_2322975_-,NA|54aa|down_0|NC_009495.1_2324488_2324650_+	NA|113aa|up_9|NC_009495.1_2314148_2314487_-	NA	cmr6gr7|298aa|up_8|NC_009495.1_2314498_2315392_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|145aa|up_7|NC_009495.1_2315403_2315838_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|280aa|up_6|NC_009495.1_2315865_2316705_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|400aa|up_5|NC_009495.1_2316716_2317916_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|571aa|up_4|NC_009495.1_2317932_2319645_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|396aa|up_3|NC_009495.1_2319645_2320833_-	NA	NA|568aa|up_2|NC_009495.1_2320845_2322549_-	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	NA|125aa|up_1|NC_009495.1_2322600_2322975_-	NA	cas6|230aa|up_0|NC_009495.1_2322994_2323684_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|54aa|down_0|NC_009495.1_2324488_2324650_+	NA	NA|552aa|down_1|NC_009495.1_2325422_2327078_-	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|283aa|down_2|NC_009495.1_2327854_2328703_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|307aa|down_3|NC_009495.1_2328993_2329914_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|498aa|down_4|NC_009495.1_2330237_2331731_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|152aa|down_5|NC_009495.1_2332655_2333111_+	pfam12638, Staygreen, Staygreen protein	NA|156aa|down_6|NC_009495.1_2333190_2333658_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|344aa|down_7|NC_009495.1_2333825_2334857_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|451aa|down_8|NC_009495.1_2335122_2336475_-	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|448aa|down_9|NC_009495.1_2336683_2338027_-	TIGR03173, pbuX, xanthine permease
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	8	2324983-2325212	8,3,2	CRISPRCasFinder,CRT,PILER-CR	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-B,Type III-C,Type III-D	ATTTAAATACATCTCATGTTAATGTTCAAC,TTTAAATACATCTCATGTTAATGTTCAAT,GTTTAAATACATCTCATGTTAATGTTCAATC	30,29,31	0	0	NA	NA	III-B:III-B:III-B	3,3,2	3	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	cmr1gr7|396aa|up_4|NC_009495.1_2319645_2320833_-,NA|125aa|up_2|NC_009495.1_2322600_2322975_-,NA|54aa|up_0|NC_009495.1_2324488_2324650_+,NA|300aa|down_9|NC_009495.1_2338462_2339362_+	cmr6gr7|298aa|up_9|NC_009495.1_2314498_2315392_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|145aa|up_8|NC_009495.1_2315403_2315838_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|280aa|up_7|NC_009495.1_2315865_2316705_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|400aa|up_6|NC_009495.1_2316716_2317916_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|571aa|up_5|NC_009495.1_2317932_2319645_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|396aa|up_4|NC_009495.1_2319645_2320833_-	NA	NA|568aa|up_3|NC_009495.1_2320845_2322549_-	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	NA|125aa|up_2|NC_009495.1_2322600_2322975_-	NA	cas6|230aa|up_1|NC_009495.1_2322994_2323684_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|54aa|up_0|NC_009495.1_2324488_2324650_+	NA	NA|552aa|down_0|NC_009495.1_2325422_2327078_-	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|283aa|down_1|NC_009495.1_2327854_2328703_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|307aa|down_2|NC_009495.1_2328993_2329914_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|498aa|down_3|NC_009495.1_2330237_2331731_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|152aa|down_4|NC_009495.1_2332655_2333111_+	pfam12638, Staygreen, Staygreen protein	NA|156aa|down_5|NC_009495.1_2333190_2333658_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|344aa|down_6|NC_009495.1_2333825_2334857_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|451aa|down_7|NC_009495.1_2335122_2336475_-	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|448aa|down_8|NC_009495.1_2336683_2338027_-	TIGR03173, pbuX, xanthine permease	NA|300aa|down_9|NC_009495.1_2338462_2339362_+	NA
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	9	2327430-2327590	9	CRISPRCasFinder	no	cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Type III-A,Type III-B,Type III-C,Type III-D	ATTTAAATACATCCTATGTTAATGTTCAAC	30	0	0	NA	NA	III-B	2	2	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	cmr1gr7|396aa|up_5|NC_009495.1_2319645_2320833_-,NA|125aa|up_3|NC_009495.1_2322600_2322975_-,NA|54aa|up_1|NC_009495.1_2324488_2324650_+,NA|300aa|down_8|NC_009495.1_2338462_2339362_+	cmr5gr11|145aa|up_9|NC_009495.1_2315403_2315838_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|280aa|up_8|NC_009495.1_2315865_2316705_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|400aa|up_7|NC_009495.1_2316716_2317916_-	TIGR01888, Hypothetical_protein_SSO1730, CRISPR type III-B/RAMP module-associated protein Cmr3	cas10|571aa|up_6|NC_009495.1_2317932_2319645_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|396aa|up_5|NC_009495.1_2319645_2320833_-	NA	NA|568aa|up_4|NC_009495.1_2320845_2322549_-	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	NA|125aa|up_3|NC_009495.1_2322600_2322975_-	NA	cas6|230aa|up_2|NC_009495.1_2322994_2323684_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|54aa|up_1|NC_009495.1_2324488_2324650_+	NA	NA|552aa|up_0|NC_009495.1_2325422_2327078_-	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|283aa|down_0|NC_009495.1_2327854_2328703_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|307aa|down_1|NC_009495.1_2328993_2329914_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|498aa|down_2|NC_009495.1_2330237_2331731_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|152aa|down_3|NC_009495.1_2332655_2333111_+	pfam12638, Staygreen, Staygreen protein	NA|156aa|down_4|NC_009495.1_2333190_2333658_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|344aa|down_5|NC_009495.1_2333825_2334857_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|451aa|down_6|NC_009495.1_2335122_2336475_-	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|448aa|down_7|NC_009495.1_2336683_2338027_-	TIGR03173, pbuX, xanthine permease	NA|300aa|down_8|NC_009495.1_2338462_2339362_+	NA	NA|440aa|down_9|NC_009495.1_2339702_2341022_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
GCF_000063585.1_ASM6358v1	NC_009495	Clostridium botulinum A str. ATCC 3502, complete genome	10	3774243-3774350	10	CRISPRCasFinder	no	cas3	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	Unclear	AGGACTTGAACCTACGACACTTCGGGT	27	0	0	NA	NA	NA	1	1	Unclear	csa3,DEDDh,DinG,WYL,cas3,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas6,casR	NA|276aa|up_7|NC_009495.1_3762878_3763706_-,NA	NA|505aa|up_9|NC_009495.1_3760732_3762247_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|161aa|up_8|NC_009495.1_3762265_3762748_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|276aa|up_7|NC_009495.1_3762878_3763706_-	NA	NA|324aa|up_6|NC_009495.1_3763755_3764727_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|259aa|up_5|NC_009495.1_3764736_3765513_-	PRK13318, PRK13318, type III pantothenate kinase	NA|558aa|up_4|NC_009495.1_3765667_3767341_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|602aa|up_3|NC_009495.1_3767543_3769349_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|182aa|up_2|NC_009495.1_3769430_3769976_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|469aa|up_1|NC_009495.1_3769959_3771366_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain	NA|796aa|up_0|NC_009495.1_3771514_3773902_-	TIGR02865, Stage_II_sporulation_protein_E, stage II sporulation protein E	NA|135aa|down_0|NC_009495.1_3774620_3775025_-	PRK05807, PRK05807, RNA-binding protein S1	NA|90aa|down_1|NC_009495.1_3775086_3775356_-	pfam04977, DivIC, Septum formation initiator	NA|133aa|down_2|NC_009495.1_3775450_3775849_-	TIGR02893, Spore_protein_YabQ, spore cortex biosynthesis protein YabQ	NA|97aa|down_3|NC_009495.1_3775863_3776154_-	TIGR02892, conserved_hypothetical_protein, sporulation protein YabP	NA|80aa|down_4|NC_009495.1_3776273_3776513_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|93aa|down_5|NC_009495.1_3776586_3776865_-	cd13831, HU, histone-like DNA-binding protein HU	NA|482aa|down_6|NC_009495.1_3776992_3778438_-	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|512aa|down_7|NC_009495.1_3778452_3779988_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|184aa|down_8|NC_009495.1_3780120_3780672_-	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T	NA|337aa|down_9|NC_009495.1_3780870_3781881_-	PRK00059, prsA, peptidylprolyl isomerase; Provisional
