assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000064305.2_ASM6430v2	NC_009613	Flavobacterium psychrophilum JIP02/86, complete genome	1	17432-17535	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	Orphan	TTAATCTATATTCAAAAATCAAAT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	NA|117aa|up_6|NC_009613.3_7613_7964_+,NA|85aa|up_5|NC_009613.3_7967_8222_+,NA|128aa|down_5|NC_009613.3_27142_27526_-,NA|146aa|down_7|NC_009613.3_29233_29671_+,NA|431aa|down_8|NC_009613.3_29705_30998_+	NA|120aa|up_9|NC_009613.3_4421_4781_-	pfam02152, FolB, Dihydroneopterin aldolase	NA|696aa|up_8|NC_009613.3_4884_6972_+	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|110aa|up_7|NC_009613.3_7284_7614_+	pfam12732, YtxH, YtxH-like protein	NA|117aa|up_6|NC_009613.3_7613_7964_+	NA	NA|85aa|up_5|NC_009613.3_7967_8222_+	NA	NA|328aa|up_4|NC_009613.3_8243_9227_-	cd03407, SPFH_like_u4, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|502aa|up_3|NC_009613.3_9388_10894_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|1111aa|up_2|NC_009613.3_11540_14873_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|141aa|up_1|NC_009613.3_14865_15288_+	TIGR00043, Endoribonuclease_YbeY, rRNA maturation RNase YbeY	NA|624aa|up_0|NC_009613.3_15498_17370_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|188aa|down_0|NC_009613.3_18645_19209_+	smart00935, OmpH, Outer membrane protein (OmpH-like)	NA|827aa|down_1|NC_009613.3_20042_22523_+	pfam13573, SprB, SprB repeat	NA|758aa|down_2|NC_009613.3_22865_25139_+	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1	NA|184aa|down_3|NC_009613.3_25989_26541_-	pfam12867, DinB_2, DinB superfamily	NA|170aa|down_4|NC_009613.3_26596_27106_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|128aa|down_5|NC_009613.3_27142_27526_-	NA	NA|383aa|down_6|NC_009613.3_27656_28805_-	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit	NA|146aa|down_7|NC_009613.3_29233_29671_+	NA	NA|431aa|down_8|NC_009613.3_29705_30998_+	NA	NA|478aa|down_9|NC_009613.3_31130_32564_+	pfam13585, CHU_C, C-terminal domain of CHU protein family
GCF_000064305.2_ASM6430v2	NC_009613	Flavobacterium psychrophilum JIP02/86, complete genome	2	232904-233204	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	Unclear	CAATAGAAGTTACAGAATTAGGAAT	25	0	0	NA	NA	NA	4	4	Unclear	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	NA,NA|203aa|down_9|NC_009613.3_242538_243147_-	NA|308aa|up_9|NC_009613.3_220888_221812_-	sd00036, LRR_3, leucine-rich repeats	NA|284aa|up_8|NC_009613.3_221827_222679_-	sd00036, LRR_3, leucine-rich repeats	NA|353aa|up_7|NC_009613.3_222694_223753_-	sd00036, LRR_3, leucine-rich repeats	NA|468aa|up_6|NC_009613.3_223767_225171_-	sd00036, LRR_3, leucine-rich repeats	NA|330aa|up_5|NC_009613.3_225497_226487_-	sd00036, LRR_3, leucine-rich repeats	NA|422aa|up_4|NC_009613.3_226800_228066_-	sd00036, LRR_3, leucine-rich repeats	NA|330aa|up_3|NC_009613.3_228379_229369_-	sd00036, LRR_3, leucine-rich repeats	NA|352aa|up_2|NC_009613.3_229383_230439_-	sd00036, LRR_3, leucine-rich repeats	NA|283aa|up_1|NC_009613.3_230454_231303_-	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|376aa|up_0|NC_009613.3_231317_232445_-	sd00036, LRR_3, leucine-rich repeats	NA|222aa|down_0|NC_009613.3_234032_234698_+	pfam14093, DUF4271, Domain of unknown function (DUF4271)	NA|250aa|down_1|NC_009613.3_234718_235468_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|257aa|down_2|NC_009613.3_235533_236304_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|135aa|down_3|NC_009613.3_236376_236781_-	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|705aa|down_4|NC_009613.3_236780_238895_-	pfam14134, DUF4301, Domain of unknown function (DUF4301)	NA|208aa|down_5|NC_009613.3_238855_239479_-	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|241aa|down_6|NC_009613.3_239487_240210_-	PRK04169, PRK04169, heptaprenylglyceryl phosphate synthase	NA|214aa|down_7|NC_009613.3_240220_240862_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|439aa|down_8|NC_009613.3_241087_242404_+	smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|203aa|down_9|NC_009613.3_242538_243147_-	NA
GCF_000064305.2_ASM6430v2	NC_009613	Flavobacterium psychrophilum JIP02/86, complete genome	3	1161841-1161934	3	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	Orphan	TTTTTAACCACAAAGTTTACAAAGGTTTTC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	NA|143aa|up_8|NC_009613.3_1153178_1153607_+,NA|315aa|up_5|NC_009613.3_1156744_1157689_-,NA|165aa|up_2|NC_009613.3_1159737_1160232_-,NA	NA|807aa|up_9|NC_009613.3_1150458_1152879_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|143aa|up_8|NC_009613.3_1153178_1153607_+	NA	NA|722aa|up_7|NC_009613.3_1153677_1155843_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|221aa|up_6|NC_009613.3_1155951_1156614_+	cd10027, UDG-F1-like, Uracil DNA glycosylase family 1 subfamily, includes Human uracil DNA glycosylase and similar proteins	NA|315aa|up_5|NC_009613.3_1156744_1157689_-	NA	NA|282aa|up_4|NC_009613.3_1157720_1158566_-	cd13637, PBP2_Ca3427_like, The conserved hypothetical protein Ca3427 exhibits the type 2 periplasmic-binding protein fold	NA|375aa|up_3|NC_009613.3_1158581_1159706_-	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs	NA|165aa|up_2|NC_009613.3_1159737_1160232_-	NA	NA|178aa|up_1|NC_009613.3_1160237_1160771_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|289aa|up_0|NC_009613.3_1160850_1161717_-	cd00436, UP_TbUP-like, uridine phosphorylases similar to Trypanosoma brucei UP	NA|110aa|down_0|NC_009613.3_1162005_1162335_-	cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH	NA|133aa|down_1|NC_009613.3_1162380_1162779_-	pfam13366, PDDEXK_3, PD-(D/E)XK nuclease superfamily	NA|317aa|down_2|NC_009613.3_1162969_1163920_-	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	NA|659aa|down_3|NC_009613.3_1164193_1166170_+	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|631aa|down_4|NC_009613.3_1166249_1168142_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|303aa|down_5|NC_009613.3_1168296_1169205_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|527aa|down_6|NC_009613.3_1169356_1170937_-	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain	NA|140aa|down_7|NC_009613.3_1171303_1171723_+	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|478aa|down_8|NC_009613.3_1171824_1173258_+	cd04275, ZnMc_pappalysin_like, Zinc-dependent metalloprotease, pappalysin_like subfamily	NA|753aa|down_9|NC_009613.3_1173223_1175482_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain
GCF_000064305.2_ASM6430v2	NC_009613	Flavobacterium psychrophilum JIP02/86, complete genome	4	1325548-1327108	1,4	PILER-CR,CRISPRCasFinder	no	cas9,cas1,cas2	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	Type II-C, Type II-B, or Type II-C?,Type II-B,Type II-A	GTTGGTAATTATAAGCTAAAATACAATTTTGAAAGCAATTCACAAC,GTTGGTAATTATAAGCTAAAATACAATTTTGAAAGCAATTCACAAC	46,46	3	3	1325897-1325925|1326882-1326911|1326958-1326987	NC_009613.3_986189-986217|NC_009613.3_1266761-1266732|NC_009613.3_1019961-1019990	NA:NA	19,20	20	TypeII-C,TypeII-B,orTypeII-C?,TypeII-B,TypeII-A	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	NA|134aa|up_9|NC_009613.3_1304707_1305109_+,NA|487aa|up_4|NC_009613.3_1309372_1310833_+,NA|447aa|down_5|NC_009613.3_1334005_1335346_-,NA|387aa|down_7|NC_009613.3_1337360_1338521_-	NA|134aa|up_9|NC_009613.3_1304707_1305109_+	NA	NA|664aa|up_8|NC_009613.3_1305105_1307097_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|109aa|up_7|NC_009613.3_1307276_1307603_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|90aa|up_6|NC_009613.3_1307635_1307905_+	COG5433, COG5433, Transposase [DNA replication, recombination, and repair]	NA|436aa|up_5|NC_009613.3_1308068_1309376_+	cd07324, M48C_Oma1-like, Oma1 peptidase-like, integral membrane metallopeptidase	NA|487aa|up_4|NC_009613.3_1309372_1310833_+	NA	NA|230aa|up_3|NC_009613.3_1318470_1319160_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	cas9|1355aa|up_2|NC_009613.3_1319821_1323886_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|299aa|up_1|NC_009613.3_1324194_1325091_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|116aa|up_0|NC_009613.3_1325083_1325431_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|104aa|down_0|NC_009613.3_1328087_1328399_+	pfam01527, HTH_Tnp_1, Transposase	NA|296aa|down_1|NC_009613.3_1328407_1329295_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|280aa|down_2|NC_009613.3_1329309_1330149_-	cd00223, TOPRIM_TopoIIB_SPO, TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11	NA|1080aa|down_3|NC_009613.3_1330152_1333392_-	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|216aa|down_4|NC_009613.3_1333388_1334036_-	cd16336, MukE, bacterial condensin complex subunit MukE	NA|447aa|down_5|NC_009613.3_1334005_1335346_-	NA	NA|665aa|down_6|NC_009613.3_1335364_1337359_-	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase	NA|387aa|down_7|NC_009613.3_1337360_1338521_-	NA	NA|716aa|down_8|NC_009613.3_1338522_1340670_-	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase	NA|286aa|down_9|NC_009613.3_1340721_1341579_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system
GCF_000064305.2_ASM6430v2	NC_009613	Flavobacterium psychrophilum JIP02/86, complete genome	5	2026310-2026423	5	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	Orphan	TCTCAACACTTTTTTGCGTTCAGTTCGGT	29	1	6	2026339-2026394|2026339-2026394|2026339-2026394|2026339-2026394|2026339-2026394|2026339-2026394	NC_009613.3_2010710-2010655|NC_009613.3_2011157-2011102|NC_009613.3_2011604-2011549|NC_009613.3_2012051-2011996|NC_009613.3_2021070-2021015|NC_009613.3_2021517-2021462	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	NA|50aa|up_9|NC_009613.3_2014948_2015098_+,NA|60aa|up_8|NC_009613.3_2015094_2015274_-,NA|93aa|up_7|NC_009613.3_2015483_2015762_-,NA|76aa|up_5|NC_009613.3_2018411_2018639_-,NA|242aa|up_2|NC_009613.3_2021816_2022542_+,NA|249aa|up_0|NC_009613.3_2025299_2026046_-,NA|256aa|down_0|NC_009613.3_2026874_2027642_-,NA|197aa|down_1|NC_009613.3_2028063_2028654_-,NA|103aa|down_4|NC_009613.3_2030407_2030716_-,NA|158aa|down_5|NC_009613.3_2030717_2031191_-	NA|50aa|up_9|NC_009613.3_2014948_2015098_+	NA	NA|60aa|up_8|NC_009613.3_2015094_2015274_-	NA	NA|93aa|up_7|NC_009613.3_2015483_2015762_-	NA	NA|755aa|up_6|NC_009613.3_2015999_2018264_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|76aa|up_5|NC_009613.3_2018411_2018639_-	NA	NA|214aa|up_4|NC_009613.3_2019147_2019789_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|336aa|up_3|NC_009613.3_2019775_2020783_+	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|242aa|up_2|NC_009613.3_2021816_2022542_+	NA	NA|401aa|up_1|NC_009613.3_2023802_2025005_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|249aa|up_0|NC_009613.3_2025299_2026046_-	NA	NA|256aa|down_0|NC_009613.3_2026874_2027642_-	NA	NA|197aa|down_1|NC_009613.3_2028063_2028654_-	NA	NA|225aa|down_2|NC_009613.3_2028666_2029341_-	pfam11153, DUF2931, Protein of unknown function (DUF2931)	NA|142aa|down_3|NC_009613.3_2029605_2030031_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|103aa|down_4|NC_009613.3_2030407_2030716_-	NA	NA|158aa|down_5|NC_009613.3_2030717_2031191_-	NA	NA|401aa|down_6|NC_009613.3_2032064_2033267_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|386aa|down_7|NC_009613.3_2033453_2034611_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|328aa|down_8|NC_009613.3_2037183_2038167_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|350aa|down_9|NC_009613.3_2038476_2039526_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system
GCF_000064305.2_ASM6430v2	NC_009613	Flavobacterium psychrophilum JIP02/86, complete genome	6	2084863-2084987	6	CRISPRCasFinder	no		cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	Orphan	AGTTTTTTCTCCACACTTTTTTGCGTTCAGTTCGG	35	1	8	2084898-2084952|2084898-2084952|2084898-2084952|2084898-2084952|2084898-2084952|2084898-2084952|2084898-2084952|2084898-2084952	NC_009613.3_2006107-2006053|NC_009613.3_2010263-2010209|NC_009613.3_2014180-2014126|NC_009613.3_2022900-2022846|NC_009613.3_2083973-2084027|NC_009613.3_2085352-2085406|NC_009613.3_2009810-2009756|NC_009613.3_2075949-2076003	NA	1	1	Orphan	cas3,DEDDh,WYL,cas9,cas1,cas2,PrimPol	NA|67aa|up_6|NC_009613.3_2079425_2079626_+,NA|94aa|up_3|NC_009613.3_2081616_2081898_+,NA|153aa|up_2|NC_009613.3_2081959_2082418_-,NA|232aa|up_1|NC_009613.3_2082601_2083297_-,NA|76aa|up_0|NC_009613.3_2083492_2083720_+,NA|126aa|down_0|NC_009613.3_2085716_2086094_+	NA|496aa|up_9|NC_009613.3_2074161_2075649_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|490aa|up_8|NC_009613.3_2076408_2077878_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|383aa|up_7|NC_009613.3_2078036_2079185_-	pfam04326, AlbA_2, Putative DNA-binding domain	NA|67aa|up_6|NC_009613.3_2079425_2079626_+	NA	NA|104aa|up_5|NC_009613.3_2080072_2080384_+	pfam01527, HTH_Tnp_1, Transposase	NA|296aa|up_4|NC_009613.3_2080392_2081280_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|94aa|up_3|NC_009613.3_2081616_2081898_+	NA	NA|153aa|up_2|NC_009613.3_2081959_2082418_-	NA	NA|232aa|up_1|NC_009613.3_2082601_2083297_-	NA	NA|76aa|up_0|NC_009613.3_2083492_2083720_+	NA	NA|126aa|down_0|NC_009613.3_2085716_2086094_+	NA	NA|65aa|down_1|NC_009613.3_2087797_2087992_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|129aa|down_2|NC_009613.3_2088031_2088418_+	pfam14690, zf-ISL3, zinc-finger of transposase IS204/IS1001/IS1096/IS1165	NA|282aa|down_3|NC_009613.3_2088523_2089369_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|968aa|down_4|NC_009613.3_2096337_2099241_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|414aa|down_5|NC_009613.3_2099294_2100536_-	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|155aa|down_6|NC_009613.3_2100551_2101016_-	PRK02001, PRK02001, ribosome assembly cofactor RimP	NA|275aa|down_7|NC_009613.3_2101198_2102023_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|144aa|down_8|NC_009613.3_2102068_2102500_-	cd07177, terB_like, tellurium resistance terB-like protein	NA|198aa|down_9|NC_009613.3_2102644_2103238_+	pfam13795, HupE_UreJ_2, HupE / UreJ protein
