assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	1	25481-25638	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	AGTGACCTTCTTTTCTTAAGATCTGGATTCCGGCCAAGAGCATGCCGGAA	50	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|75aa|up_4|NC_014012.1_18467_18692_+,NA|57aa|up_3|NC_014012.1_19430_19601_-,NA|224aa|up_1|NC_014012.1_20993_21665_+,NA|141aa|down_9|NC_014012.1_37105_37528_+	NA|310aa|up_9|NC_014012.1_11473_12403_+	TIGR04102, SEC-C_motif_domain_protein, SWIM/SEC-C metal-binding motif protein, PBPRA1643 family	NA|95aa|up_8|NC_014012.1_12413_12698_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|84aa|up_7|NC_014012.1_12697_12949_-	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	NA|1054aa|up_6|NC_014012.1_13342_16504_-	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|366aa|up_5|NC_014012.1_17007_18105_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|75aa|up_4|NC_014012.1_18467_18692_+	NA	NA|57aa|up_3|NC_014012.1_19430_19601_-	NA	NA|335aa|up_2|NC_014012.1_19973_20978_+	pfam01975, SurE, Survival protein SurE	NA|224aa|up_1|NC_014012.1_20993_21665_+	NA	NA|856aa|up_0|NC_014012.1_22135_24703_+	COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]	NA|454aa|down_0|NC_014012.1_25903_27265_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|545aa|down_1|NC_014012.1_27387_29022_-	PRK01318, PRK01318, membrane protein insertase; Provisional	NA|86aa|down_2|NC_014012.1_29025_29283_-	pfam01809, Haemolytic, Haemolytic domain	NA|119aa|down_3|NC_014012.1_29249_29606_-	PRK01732, rnpA, ribonuclease P; Reviewed	NA|46aa|down_4|NC_014012.1_29620_29758_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|463aa|down_5|NC_014012.1_30204_31593_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|367aa|down_6|NC_014012.1_31612_32713_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|366aa|down_7|NC_014012.1_33110_34208_+	PRK00064, recF, recombination protein F; Reviewed	NA|807aa|down_8|NC_014012.1_34209_36630_+	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|141aa|down_9|NC_014012.1_37105_37528_+	NA
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	2	816770-816885	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	ATATTTAACAAGAATTTAGCGGCTCGCATTAGC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA,NA|100aa|down_2|NC_014012.1_818890_819190_-	NA|434aa|up_9|NC_014012.1_803400_804702_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|404aa|up_8|NC_014012.1_804734_805946_+	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|519aa|up_7|NC_014012.1_806221_807778_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|463aa|up_6|NC_014012.1_807852_809241_+	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	NA|269aa|up_5|NC_014012.1_810420_811227_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|211aa|up_4|NC_014012.1_811298_811931_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|120aa|up_3|NC_014012.1_812507_812867_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|180aa|up_2|NC_014012.1_813519_814059_-	pfam06041, DUF924, Bacterial protein of unknown function (DUF924)	NA|522aa|up_1|NC_014012.1_814164_815730_-	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|311aa|up_0|NC_014012.1_815731_816664_-	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|97aa|down_0|NC_014012.1_816992_817283_+	pfam09904, HTH_43, Winged helix-turn helix	NA|416aa|down_1|NC_014012.1_817468_818716_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|100aa|down_2|NC_014012.1_818890_819190_-	NA	NA|544aa|down_3|NC_014012.1_819478_821110_+	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|125aa|down_4|NC_014012.1_821960_822335_+	pfam08000, bPH_1, Bacterial PH domain	NA|264aa|down_5|NC_014012.1_822493_823285_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|309aa|down_6|NC_014012.1_823753_824680_+	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|659aa|down_7|NC_014012.1_824843_826820_+	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein	NA|173aa|down_8|NC_014012.1_826966_827485_+	PRK06217, PRK06217, hypothetical protein; Validated	NA|385aa|down_9|NC_014012.1_827923_829078_-	PRK09082, PRK09082, methionine aminotransferase; Validated
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	3	1024928-1025001	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	GGCATAAGTGTTCCAGACACAAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|61aa|up_9|NC_014012.1_1005869_1006052_+,NA|62aa|up_7|NC_014012.1_1006659_1006845_+,NA|890aa|up_6|NC_014012.1_1007349_1010019_+,NA	NA|61aa|up_9|NC_014012.1_1005869_1006052_+	NA	NA|116aa|up_8|NC_014012.1_1006106_1006454_-	pfam12321, DUF3634, Protein of unknown function (DUF3634)	NA|62aa|up_7|NC_014012.1_1006659_1006845_+	NA	NA|890aa|up_6|NC_014012.1_1007349_1010019_+	NA	NA|818aa|up_5|NC_014012.1_1010281_1012735_-	COG5297, CelA, Cellobiohydrolase A (1,4-beta-cellobiosidase A) [Carbohydrate transport and metabolism]	NA|171aa|up_4|NC_014012.1_1012911_1013424_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|395aa|up_3|NC_014012.1_1013487_1014672_-	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|1379aa|up_2|NC_014012.1_1014877_1019014_-	pfam00553, CBM_2, Cellulose binding domain	NA|701aa|up_1|NC_014012.1_1019198_1021301_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|737aa|up_0|NC_014012.1_1021477_1023688_-	COG5297, CelA, Cellobiohydrolase A (1,4-beta-cellobiosidase A) [Carbohydrate transport and metabolism]	NA|618aa|down_0|NC_014012.1_1025764_1027618_-	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|576aa|down_1|NC_014012.1_1027737_1029465_-	PRK05667, dnaG, DNA primase; Validated	NA|148aa|down_2|NC_014012.1_1029568_1030012_-	pfam09424, YqeY, Yqey-like protein	NA|72aa|down_3|NC_014012.1_1030018_1030234_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|338aa|down_4|NC_014012.1_1030552_1031566_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|203aa|down_5|NC_014012.1_1031670_1032279_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|118aa|down_6|NC_014012.1_1032563_1032917_+	smart00905, FolB, Dihydroneopterin aldolase	NA|177aa|down_7|NC_014012.1_1032917_1033448_+	pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|267aa|down_8|NC_014012.1_1033516_1034317_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|319aa|down_9|NC_014012.1_1034380_1035337_+	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	4	1497461-1497562	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	TTCATATGTTTTTGGTAATCTTTGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA,NA|80aa|down_6|NC_014012.1_1504998_1505238_-,NA|135aa|down_7|NC_014012.1_1505372_1505777_+	NA|49aa|up_9|NC_014012.1_1484858_1485005_-	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|706aa|up_8|NC_014012.1_1485007_1487125_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|280aa|up_7|NC_014012.1_1487124_1487964_-	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated	NA|536aa|up_6|NC_014012.1_1488021_1489629_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|390aa|up_5|NC_014012.1_1489708_1490878_-	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|133aa|up_4|NC_014012.1_1491022_1491421_-	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|348aa|up_3|NC_014012.1_1491612_1492656_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|679aa|up_2|NC_014012.1_1492953_1494990_+	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain	NA|379aa|up_1|NC_014012.1_1495225_1496362_-	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain	NA|303aa|up_0|NC_014012.1_1496463_1497372_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|211aa|down_0|NC_014012.1_1499468_1500101_-	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional	NA|59aa|down_1|NC_014012.1_1500440_1500617_+	pfam02599, CsrA, Global regulator protein family	NA|118aa|down_2|NC_014012.1_1500871_1501225_+	cd00454, TrHb1_N, truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 1 (N)	NA|193aa|down_3|NC_014012.1_1501475_1502054_+	pfam03831, PhnA, PhnA domain	NA|152aa|down_4|NC_014012.1_1502293_1502749_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|430aa|down_5|NC_014012.1_1503437_1504727_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|80aa|down_6|NC_014012.1_1504998_1505238_-	NA	NA|135aa|down_7|NC_014012.1_1505372_1505777_+	NA	NA|172aa|down_8|NC_014012.1_1507188_1507704_-	cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|237aa|down_9|NC_014012.1_1507743_1508454_-	COG2384, COG2384, Predicted SAM-dependent methyltransferase [General function prediction only]
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	5	1551640-1551850	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL	csa3,DEDDh,cas3,WYL,DinG	Unclear	CATGTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGA,GTTCACTGCCGCACAGGCAGCTTAGAAA	31,26,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|136aa|up_1|NC_014012.1_1549264_1549672_+,NA|326aa|up_0|NC_014012.1_1550420_1551398_+,NA	NA|63aa|up_9|NC_014012.1_1540309_1540498_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|382aa|up_8|NC_014012.1_1540952_1542098_-	cd02201, FtsZ_type1, Filamenting temperature sensitive mutant Z, type 1	WYL|336aa|up_7|NC_014012.1_1542151_1543159_-	pfam13280, WYL, WYL domain	NA|492aa|up_6|NC_014012.1_1543639_1545115_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|510aa|up_5|NC_014012.1_1545205_1546735_+	PRK13531, PRK13531, regulatory ATPase RavA; Provisional	NA|527aa|up_4|NC_014012.1_1546727_1548308_+	PRK10997, yieM, ATPase RavA stimulator ViaA	NA|178aa|up_3|NC_014012.1_1548324_1548858_+	pfam18735, HEPN_RiboL-PSP, RiboL-PSP-HEPN	NA|65aa|up_2|NC_014012.1_1549073_1549268_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|136aa|up_1|NC_014012.1_1549264_1549672_+	NA	NA|326aa|up_0|NC_014012.1_1550420_1551398_+	NA	NA|166aa|down_0|NC_014012.1_1552760_1553258_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|144aa|down_1|NC_014012.1_1553557_1553989_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin	NA|111aa|down_2|NC_014012.1_1554063_1554396_+	pfam03658, Ub-RnfH, RnfH family Ubiquitin	NA|172aa|down_3|NC_014012.1_1554468_1554984_-	COG2913, OlmA, Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]	NA|274aa|down_4|NC_014012.1_1555463_1556285_+	cd19916, OphMA_like, tetrapyrrole methylase family protein similar to Omphalotus olearius omphalotin methyltransferase (OphMA) and Dendrothele bispora dbOphMA	NA|70aa|down_5|NC_014012.1_1556406_1556616_+	cd07321, Extradiol_Dioxygenase_3A_like, Subunit A of Class III extradiol dioxygenases	NA|572aa|down_6|NC_014012.1_1556841_1558557_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|487aa|down_7|NC_014012.1_1559968_1561429_+	pfam08668, HDOD, HDOD domain	NA|198aa|down_8|NC_014012.1_1561512_1562106_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|275aa|down_9|NC_014012.1_1562254_1563079_-	pfam06167, Peptidase_M90, Glucose-regulated metallo-peptidase M90
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	6	1981068-1981153	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	TAGTCGAATTTCCTACCGTCAAGTTT	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|124aa|up_8|NC_014012.1_1959745_1960117_+,NA|675aa|up_7|NC_014012.1_1960741_1962766_+,NA|217aa|up_3|NC_014012.1_1964576_1965227_+,NA|87aa|down_1|NC_014012.1_1991889_1992150_-,NA|65aa|down_2|NC_014012.1_1992749_1992944_-,NA|120aa|down_5|NC_014012.1_1995389_1995749_+	NA|117aa|up_9|NC_014012.1_1958913_1959264_+	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|124aa|up_8|NC_014012.1_1959745_1960117_+	NA	NA|675aa|up_7|NC_014012.1_1960741_1962766_+	NA	NA|185aa|up_6|NC_014012.1_1962919_1963474_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_5|NC_014012.1_1963574_1964027_+	pfam04982, HPP, HPP family	NA|110aa|up_4|NC_014012.1_1964157_1964487_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|217aa|up_3|NC_014012.1_1964576_1965227_+	NA	NA|440aa|up_2|NC_014012.1_1965370_1966690_-	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|184aa|up_1|NC_014012.1_1966950_1967502_+	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA|4030aa|up_0|NC_014012.1_1968694_1980784_+	TIGR01451, unnamed_protein_product, conserved repeat domain	NA|170aa|down_0|NC_014012.1_1984848_1985358_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|87aa|down_1|NC_014012.1_1991889_1992150_-	NA	NA|65aa|down_2|NC_014012.1_1992749_1992944_-	NA	NA|350aa|down_3|NC_014012.1_1993397_1994447_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|219aa|down_4|NC_014012.1_1994515_1995172_-	pfam09829, DUF2057, Uncharacterized protein conserved in bacteria (DUF2057)	NA|120aa|down_5|NC_014012.1_1995389_1995749_+	NA	NA|316aa|down_6|NC_014012.1_1995875_1996823_+	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup	NA|107aa|down_7|NC_014012.1_1996827_1997148_-	pfam11333, DUF3135, Protein of unknown function (DUF3135)	NA|420aa|down_8|NC_014012.1_1997360_1998620_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|232aa|down_9|NC_014012.1_1998773_1999469_+	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	7	2056962-2057091	7	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,WYL,DinG	Unclear	TATAAGCAATACCAGAAAGGGCCGTTAGCTCAGTT	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA,NA	DEDDh|224aa|up_9|NC_014012.1_2046750_2047422_-	PRK05168, PRK05168, ribonuclease T; Provisional	NA|290aa|up_8|NC_014012.1_2047564_2048434_+	pfam18393, MotY_N, MotY N-terminal domain	NA|717aa|up_7|NC_014012.1_2049061_2051212_+	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]	NA|133aa|up_6|NC_014012.1_2051380_2051779_+	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|230aa|up_5|NC_014012.1_2051768_2052458_+	TIGR02796, Protein_TolQ, TolQ protein	NA|145aa|up_4|NC_014012.1_2052457_2052892_+	TIGR02801, Protein_TolR, TolR protein	NA|320aa|up_3|NC_014012.1_2052895_2053855_+	TIGR02794, Protein_TolA, TolA protein	NA|443aa|up_2|NC_014012.1_2053865_2055194_+	PRK04792, tolB, Tol-Pal system protein TolB	NA|179aa|up_1|NC_014012.1_2055228_2055765_+	PRK10802, PRK10802, peptidoglycan-associated lipoprotein Pal	NA|242aa|up_0|NC_014012.1_2055784_2056510_+	PRK10803, PRK10803, tol-pal system protein YbgF; Provisional	NA|381aa|down_0|NC_014012.1_2059658_2060801_+	pfam02530, Porin_2, Porin subfamily	NA|90aa|down_1|NC_014012.1_2060889_2061159_-	PRK11200, grxA, glutaredoxin 1; Provisional	NA|163aa|down_2|NC_014012.1_2061502_2061991_+	pfam08139, LPAM_1, Prokaryotic membrane lipoprotein lipid attachment site	NA|583aa|down_3|NC_014012.1_2062111_2063860_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|651aa|down_4|NC_014012.1_2064016_2065969_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|204aa|down_5|NC_014012.1_2069665_2070277_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|220aa|down_6|NC_014012.1_2070561_2071221_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|143aa|down_7|NC_014012.1_2071443_2071872_-	cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT)	NA|1130aa|down_8|NC_014012.1_2072313_2075703_+	COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism]	NA|986aa|down_9|NC_014012.1_2075887_2078845_+	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	8	3263238-3263325	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	AATTATGGGTGGCTTTGTTTGGAATTCGGCT	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|118aa|up_2|NC_014012.1_3259476_3259830_+,NA|327aa|up_0|NC_014012.1_3261638_3262619_-,NA|300aa|down_1|NC_014012.1_3265927_3266827_-,NA|102aa|down_2|NC_014012.1_3267170_3267476_+	NA|163aa|up_9|NC_014012.1_3249448_3249937_-	PRK10845, PRK10845, colicin V production protein; Provisional	NA|218aa|up_8|NC_014012.1_3250050_3250704_-	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|428aa|up_7|NC_014012.1_3250739_3252023_-	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|262aa|up_6|NC_014012.1_3252090_3252876_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|1192aa|up_5|NC_014012.1_3253056_3256632_-	TIGR03505, FimV_core, FimV N-terminal domain	NA|339aa|up_4|NC_014012.1_3256836_3257853_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|388aa|up_3|NC_014012.1_3257855_3259019_-	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains	NA|118aa|up_2|NC_014012.1_3259476_3259830_+	NA	NA|264aa|up_1|NC_014012.1_3259965_3260757_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|327aa|up_0|NC_014012.1_3261638_3262619_-	NA	NA|538aa|down_0|NC_014012.1_3263362_3264976_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|300aa|down_1|NC_014012.1_3265927_3266827_-	NA	NA|102aa|down_2|NC_014012.1_3267170_3267476_+	NA	NA|764aa|down_3|NC_014012.1_3267422_3269714_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|404aa|down_4|NC_014012.1_3270136_3271348_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|710aa|down_5|NC_014012.1_3271458_3273588_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|180aa|down_6|NC_014012.1_3273645_3274185_-	cd18098, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|90aa|down_7|NC_014012.1_3274181_3274451_-	pfam08891, YfcL, YfcL protein	NA|383aa|down_8|NC_014012.1_3274617_3275766_-	COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]	NA|391aa|down_9|NC_014012.1_3275879_3277052_-	pfam12832, MFS_1_like, MFS_1 like family
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	9	3459868-3460133	2	CRT	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	AGGTTGAGATCTTTTTCCATCTCTTCATAGGA	32	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|158aa|up_8|NC_014012.1_3447313_3447787_-,NA|393aa|up_2|NC_014012.1_3455001_3456180_-,NA|143aa|down_9|NC_014012.1_3472845_3473274_-	NA|511aa|up_9|NC_014012.1_3445709_3447242_-	cd06567, Peptidase_S41, C-terminal processing peptidase family S41	NA|158aa|up_8|NC_014012.1_3447313_3447787_-	NA	NA|365aa|up_7|NC_014012.1_3447845_3448940_-	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs	NA|569aa|up_6|NC_014012.1_3448943_3450650_-	PRK09274, PRK09274, peptide synthase; Provisional	NA|296aa|up_5|NC_014012.1_3450810_3451698_-	PRK03592, PRK03592, haloalkane dehalogenase; Provisional	NA|350aa|up_4|NC_014012.1_3451811_3452861_-	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|422aa|up_3|NC_014012.1_3453108_3454374_-	pfam13679, Methyltransf_32, Methyltransferase domain	NA|393aa|up_2|NC_014012.1_3455001_3456180_-	NA	NA|83aa|up_1|NC_014012.1_3456403_3456652_+	pfam06945, DUF1289, Protein of unknown function (DUF1289)	NA|121aa|up_0|NC_014012.1_3456745_3457108_-	PRK11295, PRK11295, HNH nuclease family protein	NA|273aa|down_0|NC_014012.1_3460904_3461723_-	PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional	NA|551aa|down_1|NC_014012.1_3461812_3463465_-	COG4985, COG4985, ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]	NA|752aa|down_2|NC_014012.1_3463612_3465868_-	COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|167aa|down_3|NC_014012.1_3466037_3466538_+	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism]	NA|272aa|down_4|NC_014012.1_3466791_3467607_+	pfam10977, DUF2797, Protein of unknown function (DUF2797)	NA|135aa|down_5|NC_014012.1_3467670_3468075_-	cd02236, cupin_CV2614-like, Chromobacterium violaceum CV2614 and related proteins, cupin domain	NA|718aa|down_6|NC_014012.1_3468229_3470383_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|310aa|down_7|NC_014012.1_3470880_3471810_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|325aa|down_8|NC_014012.1_3471812_3472787_+	pfam03280, Lipase_chap, Proteobacterial lipase chaperone protein	NA|143aa|down_9|NC_014012.1_3472845_3473274_-	NA
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	10	4004896-4004990	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	CTAAGAAATATAAGAAAGCAGAAAGGTAAATAA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|112aa|up_2|NC_014012.1_4000503_4000839_+,NA|66aa|down_9|NC_014012.1_4018417_4018615_+	NA|130aa|up_9|NC_014012.1_3992567_3992957_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|365aa|up_8|NC_014012.1_3992994_3994089_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|409aa|up_7|NC_014012.1_3994532_3995759_-	PRK08013, PRK08013, oxidoreductase; Provisional	NA|429aa|up_6|NC_014012.1_3995937_3997224_-	TIGR01984, 2-polyprenyl-6-methoxyphenol_hydroxylase, 2-polyprenyl-6-methoxyphenol 4-hydroxylase	NA|192aa|up_5|NC_014012.1_3997298_3997874_-	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|103aa|up_4|NC_014012.1_3998487_3998796_+	PRK10972, PRK10972, cell division protein ZapA	NA|204aa|up_3|NC_014012.1_3999633_4000245_+	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional	NA|112aa|up_2|NC_014012.1_4000503_4000839_+	NA	NA|169aa|up_1|NC_014012.1_4001137_4001644_+	pfam04170, NlpE, NlpE N-terminal domain	NA|850aa|up_0|NC_014012.1_4001752_4004302_-	pfam01752, Peptidase_M9, Collagenase	NA|223aa|down_0|NC_014012.1_4005271_4005940_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|193aa|down_1|NC_014012.1_4006077_4006656_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|112aa|down_2|NC_014012.1_4006837_4007173_+	pfam11342, DUF3144, Protein of unknown function (DUF3144)	NA|205aa|down_3|NC_014012.1_4007351_4007966_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|859aa|down_4|NC_014012.1_4008947_4011524_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|490aa|down_5|NC_014012.1_4011991_4013461_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|499aa|down_6|NC_014012.1_4013703_4015200_+	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|533aa|down_7|NC_014012.1_4015496_4017095_+	PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated	NA|351aa|down_8|NC_014012.1_4017263_4018316_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|66aa|down_9|NC_014012.1_4018417_4018615_+	NA
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	11	4128891-4129008	10	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	AGGAACATAATCGGATGGCAGATATGAAGAT	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|112aa|up_0|NC_014012.1_4128235_4128571_+,NA|210aa|down_1|NC_014012.1_4131356_4131986_+,NA|206aa|down_3|NC_014012.1_4133647_4134265_+,NA|185aa|down_4|NC_014012.1_4134373_4134928_+,NA|83aa|down_9|NC_014012.1_4142874_4143123_-	NA|202aa|up_9|NC_014012.1_4118280_4118886_-	PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed	NA|402aa|up_8|NC_014012.1_4119879_4121085_-	PRK05326, PRK05326, potassium/proton antiporter	NA|263aa|up_7|NC_014012.1_4121454_4122243_-	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|486aa|up_6|NC_014012.1_4122522_4123980_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|308aa|up_5|NC_014012.1_4124173_4125097_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|96aa|up_4|NC_014012.1_4125712_4126000_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|90aa|up_3|NC_014012.1_4126141_4126411_+	pfam13467, RHH_4, Ribbon-helix-helix domain	NA|272aa|up_2|NC_014012.1_4126536_4127352_-	COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms]	NA|175aa|up_1|NC_014012.1_4127559_4128084_-	pfam11286, DUF3087, Protein of unknown function (DUF3087)	NA|112aa|up_0|NC_014012.1_4128235_4128571_+	NA	NA|449aa|down_0|NC_014012.1_4129438_4130785_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|210aa|down_1|NC_014012.1_4131356_4131986_+	NA	NA|251aa|down_2|NC_014012.1_4132108_4132861_+	cd02554, PseudoU_synth_RluF, Pseudouridine synthase, Escherichia coli RluF like	NA|206aa|down_3|NC_014012.1_4133647_4134265_+	NA	NA|185aa|down_4|NC_014012.1_4134373_4134928_+	NA	NA|719aa|down_5|NC_014012.1_4135709_4137866_-	pfam10459, Peptidase_S46, Peptidase S46	NA|400aa|down_6|NC_014012.1_4138112_4139312_-	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|192aa|down_7|NC_014012.1_4139990_4140566_+	COG2119, COG2119, Predicted membrane protein [Function unknown]	NA|489aa|down_8|NC_014012.1_4140748_4142215_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|83aa|down_9|NC_014012.1_4142874_4143123_-	NA
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	12	4175933-4176049	11	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	TGATGTGGACATTACAGGTATGCTAATGGACGCAATCGAAGCA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|142aa|up_7|NC_014012.1_4163350_4163776_-,NA|451aa|up_6|NC_014012.1_4163772_4165125_-,NA|390aa|down_2|NC_014012.1_4180767_4181937_-,NA|143aa|down_3|NC_014012.1_4181920_4182349_-	NA|87aa|up_9|NC_014012.1_4161277_4161538_+	pfam16691, DUF5062, Domain of unknown function (DUF5062)	NA|549aa|up_8|NC_014012.1_4161717_4163364_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|142aa|up_7|NC_014012.1_4163350_4163776_-	NA	NA|451aa|up_6|NC_014012.1_4163772_4165125_-	NA	NA|1519aa|up_5|NC_014012.1_4165460_4170017_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|304aa|up_4|NC_014012.1_4170137_4171049_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|391aa|up_3|NC_014012.1_4171415_4172588_+	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins	NA|183aa|up_2|NC_014012.1_4172728_4173277_+	PRK04860, PRK04860, SprT family zinc-dependent metalloprotease	NA|240aa|up_1|NC_014012.1_4173433_4174153_+	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional	NA|243aa|up_0|NC_014012.1_4174160_4174889_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|447aa|down_0|NC_014012.1_4176156_4177497_+	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|825aa|down_1|NC_014012.1_4177512_4179987_-	cd01948, EAL, EAL domain	NA|390aa|down_2|NC_014012.1_4180767_4181937_-	NA	NA|143aa|down_3|NC_014012.1_4181920_4182349_-	NA	NA|344aa|down_4|NC_014012.1_4182753_4183785_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|557aa|down_5|NC_014012.1_4184006_4185677_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|376aa|down_6|NC_014012.1_4185915_4187043_+	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|43aa|down_7|NC_014012.1_4187624_4187753_+	pfam11346, DUF3149, Protein of unknown function (DUF3149)	NA|204aa|down_8|NC_014012.1_4187959_4188571_-	pfam14163, SieB, Super-infection exclusion protein B	NA|551aa|down_9|NC_014012.1_4188807_4190460_+	pfam17149, CHASE5, Periplasmic sensor domain found in signal transduction proteins
GCF_000091325.1_ASM9132v1	NC_014012	Shewanella violacea DSS12, complete genome	13	4896218-4896324	12	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG	Orphan	ACAGATGAGGGAATCGCAGCATGATGA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG	NA|62aa|up_5|NC_014012.1_4889108_4889294_+,NA|441aa|up_3|NC_014012.1_4891221_4892544_-,NA|495aa|down_0|NC_014012.1_4897612_4899097_-,NA|60aa|down_2|NC_014012.1_4900553_4900733_+	NA|395aa|up_9|NC_014012.1_4885723_4886908_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|226aa|up_8|NC_014012.1_4887193_4887871_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|144aa|up_7|NC_014012.1_4887998_4888430_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|135aa|up_6|NC_014012.1_4888589_4888994_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|62aa|up_5|NC_014012.1_4889108_4889294_+	NA	NA|599aa|up_4|NC_014012.1_4889296_4891093_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|441aa|up_3|NC_014012.1_4891221_4892544_-	NA	NA|286aa|up_2|NC_014012.1_4892540_4893398_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|123aa|up_1|NC_014012.1_4893438_4893807_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|517aa|up_0|NC_014012.1_4893963_4895514_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|495aa|down_0|NC_014012.1_4897612_4899097_-	NA	NA|338aa|down_1|NC_014012.1_4899251_4900265_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|60aa|down_2|NC_014012.1_4900553_4900733_+	NA	NA|553aa|down_3|NC_014012.1_4900757_4902416_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|178aa|down_4|NC_014012.1_4903210_4903744_-	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional	NA|164aa|down_5|NC_014012.1_4903911_4904403_-	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA|395aa|down_6|NC_014012.1_4904561_4905746_-	pfam03486, HI0933_like, HI0933-like protein	NA|340aa|down_7|NC_014012.1_4906771_4907791_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|164aa|down_8|NC_014012.1_4907897_4908389_-	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|145aa|down_9|NC_014012.1_4908495_4908930_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
