assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000091345.1_ASM9134v1	NC_012973	Helicobacter pylori B38, complete genome	1	718973-719067	1	CRISPRCasFinder	no		cas3,cas14k,DEDDh	Orphan	AAACCGAGACTAAAAACGACAAAAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,DEDDh	NA|151aa|up_0|NC_012973.1_718313_718766_+,NA|513aa|down_0|NC_012973.1_719320_720859_-	NA|136aa|up_9|NC_012973.1_708800_709208_-	PRK10604, PRK10604, sensor protein RstB; Provisional	NA|274aa|up_8|NC_012973.1_709219_710041_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|561aa|up_7|NC_012973.1_710037_711720_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|98aa|up_6|NC_012973.1_711728_712022_-	COG0762, COG0762, Predicted integral membrane protein [Function unknown]	NA|440aa|up_5|NC_012973.1_712018_713338_-	PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional	NA|218aa|up_4|NC_012973.1_713502_714156_-	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|286aa|up_3|NC_012973.1_714157_715015_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|229aa|up_2|NC_012973.1_716453_717140_+	TIGR00364, 7-cyano-7-deazaguanine_synthase, queuosine biosynthesis protein QueC	NA|318aa|up_1|NC_012973.1_717208_718162_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|151aa|up_0|NC_012973.1_718313_718766_+	NA	NA|513aa|down_0|NC_012973.1_719320_720859_-	NA	NA|179aa|down_1|NC_012973.1_720860_721397_-	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group	NA|225aa|down_2|NC_012973.1_721393_722068_-	COG1969, HyaC, Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]	NA|579aa|down_3|NC_012973.1_722080_723817_-	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase	NA|385aa|down_4|NC_012973.1_723826_724981_-	TIGR00391, small_subunit, hydrogenase (NiFe) small subunit (hydA)	NA|195aa|down_5|NC_012973.1_725143_725728_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|353aa|down_6|NC_012973.1_728058_729117_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|402aa|down_7|NC_012973.1_729128_730334_-	COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]	NA|360aa|down_8|NC_012973.1_730336_731416_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|376aa|down_9|NC_012973.1_731535_732663_+	PRK05839, PRK05839, succinyldiaminopimelate transaminase
GCF_000091345.1_ASM9134v1	NC_012973	Helicobacter pylori B38, complete genome	2	891090-891209	2	CRISPRCasFinder	no		cas3,cas14k,DEDDh	Orphan	AATATTGAGATTATCCCCCAAGAACGGCTTTAAT	34	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,DEDDh	NA|194aa|up_4|NC_012973.1_883293_883875_+,NA	NA|301aa|up_9|NC_012973.1_876062_876965_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|519aa|up_8|NC_012973.1_876981_878538_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|513aa|up_7|NC_012973.1_878918_880457_+	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|307aa|up_6|NC_012973.1_880507_881428_+	PRK05842, flgD, flagellar hook assembly protein FlgD	NA|606aa|up_5|NC_012973.1_881424_883242_+	PRK05841, flgE, flagellar hook protein FlgE; Validated	NA|194aa|up_4|NC_012973.1_883293_883875_+	NA	NA|384aa|up_3|NC_012973.1_883884_885036_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_2|NC_012973.1_885039_887067_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|518aa|up_1|NC_012973.1_887653_889207_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|533aa|up_0|NC_012973.1_889228_890827_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|down_0|NC_012973.1_891700_893245_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|814aa|down_1|NC_012973.1_893570_896012_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|down_2|NC_012973.1_896195_896627_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|down_3|NC_012973.1_896631_899889_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|down_4|NC_012973.1_899986_900679_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|down_5|NC_012973.1_900825_901824_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|2525aa|down_6|NC_012973.1_901904_909479_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|365aa|down_7|NC_012973.1_909530_910625_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_8|NC_012973.1_910692_910899_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_9|NC_012973.1_911055_911637_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR
GCF_000091345.1_ASM9134v1	NC_012973	Helicobacter pylori B38, complete genome	3	902685-902880	3	CRISPRCasFinder	no		cas3,cas14k,DEDDh	Orphan	TTCAATCAAGGGACTTATCACTTTA	25	0	0	NA	NA	I-B	3	3	Orphan	cas3,cas14k,DEDDh	NA,NA|220aa|down_8|NC_012973.1_915964_916624_+	NA|384aa|up_9|NC_012973.1_883884_885036_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NC_012973.1_885039_887067_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|518aa|up_7|NC_012973.1_887653_889207_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|533aa|up_6|NC_012973.1_889228_890827_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NC_012973.1_891700_893245_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|814aa|up_4|NC_012973.1_893570_896012_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|up_3|NC_012973.1_896195_896627_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NC_012973.1_896631_899889_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NC_012973.1_899986_900679_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NC_012973.1_900825_901824_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|365aa|down_0|NC_012973.1_909530_910625_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NC_012973.1_910692_910899_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NC_012973.1_911055_911637_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NC_012973.1_911633_912779_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|317aa|down_4|NC_012973.1_912747_913698_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NC_012973.1_913698_914241_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NC_012973.1_914256_915168_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NC_012973.1_915164_915968_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NC_012973.1_915964_916624_+	NA	NA|201aa|down_9|NC_012973.1_916625_917228_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_000091345.1_ASM9134v1	NC_012973	Helicobacter pylori B38, complete genome	4	1072128-1072213	4	CRISPRCasFinder	no		cas3,cas14k,DEDDh	Orphan	CATGCGAGAAGTAGTGGTTCAAGAAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14k,DEDDh	NA|512aa|up_8|NC_012973.1_1061782_1063318_+,NA|436aa|down_0|NC_012973.1_1073434_1074742_+,NA|217aa|down_9|NC_012973.1_1083210_1083861_-	NA|345aa|up_9|NC_012973.1_1060033_1061068_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NC_012973.1_1061782_1063318_+	NA	NA|251aa|up_7|NC_012973.1_1063335_1064088_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NC_012973.1_1064294_1065167_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|207aa|up_5|NC_012973.1_1065241_1065862_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NC_012973.1_1065880_1067707_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NC_012973.1_1067773_1069051_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NC_012973.1_1069061_1069745_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NC_012973.1_1069731_1070742_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NC_012973.1_1070902_1071949_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NC_012973.1_1073434_1074742_+	NA	NA|221aa|down_1|NC_012973.1_1074748_1075411_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NC_012973.1_1075688_1076249_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NC_012973.1_1076264_1076657_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NC_012973.1_1076666_1077890_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NC_012973.1_1077902_1078847_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NC_012973.1_1078956_1080279_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NC_012973.1_1080349_1081183_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NC_012973.1_1081193_1083170_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|217aa|down_9|NC_012973.1_1083210_1083861_-	NA
