The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013504	Lactobacillus johnsonii FI9785, complete genome	1755993	427365	490413	1755993	tRNA,bacteriocin,protease,transposase	Staphylococcus_phage(18.75%)	50	NA	NA
WP_012845729.1|427365_430014_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.4	1.8e-62
WP_003647717.1|430068_430326_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_012845730.1|430325_430757_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_004895671.1|430758_431073_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_012845731.1|431130_431673_+	CvpA family protein	NA	NA	NA	NA	NA
WP_012845732.1|431715_434082_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	51.8	1.0e-21
WP_012845733.1|434160_434472_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.7	4.2e-16
WP_012845734.1|434555_434951_-	YslB family protein	NA	NA	NA	NA	NA
WP_012845735.1|435047_435848_+	glutamate racemase	NA	NA	NA	NA	NA
WP_012845736.1|435850_436474_+	XTP/dITP diphosphatase	NA	C6K8R0	Cassava_brown_streak_virus	34.6	8.0e-14
WP_148213318.1|436536_436650_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_148213310.1|436649_437468_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	38.9	6.1e-30
WP_012845738.1|437392_437920_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012845739.1|438098_439277_+	acetate kinase	NA	NA	NA	NA	NA
WP_012845740.1|439322_440219_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_004895662.1|440341_440773_+	DUF948 domain-containing protein	NA	NA	NA	NA	NA
WP_012845741.1|440795_441131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845742.1|441219_442326_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_012845743.1|442469_443465_+	substrate-binding domain-containing protein	NA	C6ZCU4	Enterobacteria_phage	25.2	7.2e-17
WP_012845744.1|443537_446375_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_012845745.1|446473_447871_-	dipeptidase PepV	NA	NA	NA	NA	NA
WP_012845746.1|447890_449273_-	glycerophosphodiester phosphodiesterase	NA	A0A076G4Q2	Staphylococcus_phage	29.7	1.5e-17
WP_004895655.1|449372_449699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845747.1|449711_451091_+	bifunctional metallophosphatase/5'-nucleotidase	NA	S4VPC4	Pandoravirus	22.2	8.0e-06
WP_012845748.1|451090_451630_+	YutD family protein	NA	NA	NA	NA	NA
WP_012845749.1|451632_452415_+	TIGR01457 family HAD-type hydrolase	NA	NA	NA	NA	NA
WP_012845750.1|452402_453020_+	TIGR01906 family membrane protein	NA	NA	NA	NA	NA
WP_004895650.1|453027_453678_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_012845751.1|453704_454661_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K9L162	Tupanvirus	30.1	2.9e-15
WP_012845752.1|454760_455132_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012845753.1|461155_462364_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	66.0	2.7e-135
WP_012845754.1|462353_463811_+	MFS transporter	NA	NA	NA	NA	NA
WP_012845755.1|463853_464561_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_012845756.1|464802_467217_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	67.2	0.0e+00
WP_012845757.1|467318_468977_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_012845759.1|470209_470968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845760.1|470991_471837_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_012845761.1|471889_472816_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	28.1	1.4e-17
WP_012845762.1|473095_474772_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	31.4	5.6e-70
WP_004895615.1|474883_475801_+	class II fructose-bisphosphate aldolase family protein	NA	NA	NA	NA	NA
WP_012845763.1|475867_476179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845771.1|481100_481637_+	hypoxanthine phosphoribosyltransferase	NA	A0A2K9L634	Tupanvirus	28.0	8.7e-09
WP_012845772.1|481649_482321_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_012845774.1|483245_484580_-|transposase	transposase	transposase	A0A286QQE5	Streptococcus_phage	37.1	1.7e-61
WP_012845775.1|484680_485145_+|transposase	IS200/IS605 family transposase	transposase	A0A0P0IQC6	Lactobacillus_phage	43.1	1.0e-29
WP_012845776.1|485187_485646_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_012845777.1|485710_486904_-	chloride channel protein	NA	NA	NA	NA	NA
WP_012845778.1|487030_488026_+|bacteriocin	class III bacteriocin	bacteriocin	NA	NA	NA	NA
WP_012845779.1|488093_488660_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_012845782.1|489609_490413_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 2
NC_013504	Lactobacillus johnsonii FI9785, complete genome	1755993	678683	685915	1755993		Pacmanvirus(16.67%)	8	NA	NA
WP_012845948.1|678683_679103_+	NUDIX domain-containing protein	NA	A0A1X6WFB1	Pacmanvirus	34.1	3.4e-08
WP_012845949.1|679086_679725_+	uracil-DNA glycosylase	NA	A0A218MKQ4	uncultured_virus	36.1	1.9e-07
WP_012845950.1|679761_680385_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	56.3	3.2e-15
WP_004895283.1|680522_680771_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003649044.1|680843_681065_+	YneF family protein	NA	NA	NA	NA	NA
WP_012845951.1|681140_682907_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	29.9	1.1e-52
WP_012845952.1|682896_684690_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	24.0	1.3e-11
WP_012845953.1|684733_685915_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	34.9	3.0e-46
>prophage 3
NC_013504	Lactobacillus johnsonii FI9785, complete genome	1755993	692649	812407	1755993	integrase,holin,protease,terminase,portal,head,capsid,tail,tRNA	Lactobacillus_phage(32.76%)	114	690322:690340	750915:750933
690322:690340	attL	TTGATCCAAATGCTAAGAA	NA	NA	NA	NA
WP_012845959.1|692649_693906_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_012845960.1|693922_695620_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_012845961.1|695625_699924_+	PolC-type DNA polymerase III	NA	A0A1X9SH08	Bradyrhizobium_phage	35.8	6.7e-19
WP_012845962.1|700031_700508_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_012845963.1|700527_701712_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003649028.1|701758_702055_+	YlxR family protein	NA	NA	NA	NA	NA
WP_004897130.1|702057_702369_+	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_012845964.1|702373_705016_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.7	9.8e-21
WP_004895256.1|705046_705418_+	ribosome-binding factor A	NA	NA	NA	NA	NA
WP_012845965.1|705463_706357_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_012845966.1|706369_707308_+	riboflavin biosynthesis protein RibF	NA	A0A1V0SD03	Indivirus	31.3	4.4e-08
WP_012845967.1|707566_709078_+	ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	24.8	5.3e-27
WP_012845970.1|709860_710919_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_012845971.1|710930_711509_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_004895247.1|711526_713401_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	49.1	7.7e-137
WP_012845972.1|713480_714647_+	molecular chaperone DnaJ	NA	Q8QNB4	Ectocarpus_siliculosus_virus	26.2	1.0e-17
WP_012845973.1|714790_716629_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.8	1.2e-20
WP_012845974.1|716791_717481_+	class A sortase	NA	NA	NA	NA	NA
WP_012845975.1|717580_719851_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	34.3	7.3e-81
WP_012845976.1|719985_720513_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	39.3	1.9e-24
WP_012845977.1|720636_722145_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA	NA
WP_041822254.1|722198_723686_-	cardiolipin synthase	NA	NA	NA	NA	NA
WP_012845979.1|723820_724777_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	58.9	2.6e-112
WP_012845980.1|724794_725298_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.2	6.9e-24
WP_012845981.1|725473_726817_+	SLC45 family MFS transporter	NA	NA	NA	NA	NA
WP_012845982.1|726890_729158_-	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	26.2	5.1e-42
WP_012845983.1|729279_730128_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012845984.1|730585_731758_-|integrase	site-specific integrase	integrase	Q6SEG4	Lactobacillus_prophage	91.3	1.7e-203
WP_012845985.1|731920_732493_-	DUF5067 domain-containing protein	NA	Q6SEF8	Lactobacillus_prophage	80.0	3.5e-72
WP_012845986.1|732544_733348_-	hypothetical protein	NA	A0A097BY73	Enterococcus_phage	65.5	1.5e-12
WP_012845987.1|733360_733765_-	hypothetical protein	NA	Q6SEF7	Lactobacillus_prophage	94.8	5.8e-74
WP_012845988.1|733754_734084_-	helix-turn-helix transcriptional regulator	NA	Q6SEF6	Lactobacillus_prophage	52.6	8.5e-15
WP_012845989.1|734369_734579_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012845990.1|734584_734794_+	helix-turn-helix domain-containing protein	NA	Q6SE97	Lactobacillus_prophage	92.8	5.3e-31
WP_080513808.1|734992_735556_+	siphovirus Gp157 family protein	NA	K7P6T5	Enterobacteria_phage	31.6	1.0e-12
WP_012845993.1|735571_735793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845994.1|735910_737179_+	DEAD/DEAH box helicase	NA	U3PFS7	Lactobacillus_phage	57.7	7.3e-131
WP_012845995.1|737175_737514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845996.1|737517_738285_+	AAA family ATPase	NA	U3PIS9	Lactobacillus_phage	57.6	3.1e-68
WP_012845997.1|738284_738872_+	single-stranded DNA-binding protein	NA	U3PDN3	Lactobacillus_phage	47.9	2.5e-41
WP_012845998.1|738886_739195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012845999.1|739197_739998_+	bifunctional DNA primase/polymerase	NA	U3PBE3	Lactobacillus_phage	59.6	1.9e-76
WP_012846000.1|739994_741314_+	hypothetical protein	NA	U3PCP1	Lactobacillus_phage	51.7	1.4e-113
WP_148213311.1|741790_742012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012846002.1|742013_742211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012846003.1|742211_742463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012846004.1|742473_742644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012846005.1|742644_742980_+	VRR-NUC domain-containing protein	NA	L0P7E5	Lactobacillus_phage	81.8	2.4e-49
WP_012846006.1|742991_743486_+	hypothetical protein	NA	Q9T1G3	Lactobacillus_phage	63.2	1.9e-55
WP_012846007.1|743501_743951_+	hypothetical protein	NA	Q6SEE2	Lactobacillus_prophage	66.4	4.1e-52
WP_012846008.1|744342_744771_+|terminase	terminase small subunit	terminase	A7J290	Streptococcus_phage	56.1	2.4e-30
WP_012846009.1|744899_746171_+|terminase	PBSX family phage terminase large subunit	terminase	Q9AZ91	Lactobacillus_prophage	82.0	4.8e-207
WP_012846010.1|746183_747590_+|portal	phage portal protein	portal	A0A0A1ER87	Lactobacillus_phage	43.4	7.1e-103
WP_012846011.1|747573_748986_+|capsid	minor capsid protein	capsid	A0A0A1EKX3	Lactobacillus_phage	45.0	2.0e-73
WP_148213312.1|748978_749221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012846013.1|749367_749928_+	DUF4355 domain-containing protein	NA	A0A0P0ID10	Lactobacillus_phage	44.4	2.2e-18
WP_012846014.1|749945_750812_+	hypothetical protein	NA	A0A0A1ELG8	Lactobacillus_phage	58.4	1.2e-84
WP_012846015.1|750969_751326_+|head,tail	phage head-tail connector protein	head,tail	A0A0A1ER91	Lactobacillus_phage	56.9	2.9e-29
750915:750933	attR	TTGATCCAAATGCTAAGAA	NA	NA	NA	NA
WP_012846016.1|751322_751640_+	hypothetical protein	NA	A0A0A1EKX8	Lactobacillus_phage	39.6	4.8e-15
WP_012846017.1|751626_752025_+	HK97 gp10 family phage protein	NA	A0A097BY98	Enterococcus_phage	36.9	3.2e-16
WP_012846018.1|752017_752404_+	DUF3168 domain-containing protein	NA	A0A0P0IJZ9	Lactobacillus_phage	28.9	1.3e-09
WP_012846019.1|752417_752993_+|tail	phage major tail protein, TP901-1 family	tail	A0A0A1ELH3	Lactobacillus_phage	72.3	2.4e-73
WP_012846020.1|753038_753368_+|tail	tail assembly chaperone	tail	A0A0A1ER95	Lactobacillus_phage	55.9	4.2e-22
WP_012846021.1|753466_753814_+	hypothetical protein	NA	A0A0P0ID51	Lactobacillus_phage	55.1	3.3e-25
WP_012846022.1|753803_757409_+|tail	phage tail tape measure protein	tail	A0A2P0ZL32	Lactobacillus_phage	50.9	1.5e-99
WP_012846023.1|757421_758213_+|tail	phage tail family protein	tail	A0A1B1SDT9	Weissella_phage	32.3	1.8e-26
WP_012846024.1|758209_763630_+|tail	phage tail protein	tail	A0A0A1ELH9	Lactobacillus_phage	43.9	1.4e-66
WP_012846025.1|763622_763778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041822260.1|763761_764022_+	hypothetical protein	NA	Q6SE67	Lactobacillus_prophage	88.2	2.4e-33
WP_012846027.1|764021_764432_+	hypothetical protein	NA	Q6SE66	Lactobacillus_prophage	85.0	2.2e-57
WP_012846028.1|764441_764699_+	hypothetical protein	NA	Q6SE65	Lactobacillus_prophage	91.7	3.7e-34
WP_012846029.1|764691_765036_+|holin	phage holin	holin	Q6SE64	Lactobacillus_prophage	81.7	1.5e-46
WP_012846030.1|765028_765970_+	SH3 domain-containing protein	NA	Q6SE63	Lactobacillus_prophage	59.4	7.1e-107
WP_012846031.1|766329_766914_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_004897160.1|767090_768377_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	51.7	2.6e-107
WP_011162173.1|768490_768772_+	membrane protein	NA	NA	NA	NA	NA
WP_012846032.1|768838_770461_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	27.7	3.2e-54
WP_012846035.1|772163_773015_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_012846036.1|773014_773719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012846037.1|774134_774989_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012846038.1|775005_776055_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	2.7e-30
WP_012846039.1|776047_776749_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012846040.1|776886_778293_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_012846041.1|778307_779681_+	flavocytochrome c	NA	M1HTN0	Paramecium_bursaria_Chlorella_virus	30.7	6.4e-48
WP_012846042.1|779760_780687_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_012846043.1|780795_782178_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_012846044.1|782269_783295_+	asparaginase	NA	NA	NA	NA	NA
WP_012846045.1|783312_785742_+	cation-translocating P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	25.0	4.3e-39
WP_012846046.1|785821_787513_+	cell division protein	NA	NA	NA	NA	NA
WP_012846047.1|787677_789357_+	cell division protein	NA	NA	NA	NA	NA
WP_012846048.1|789421_789925_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_012846049.1|789986_790934_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_004895134.1|790966_791347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012846050.1|791364_793614_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1X9SH80	Bradyrhizobium_phage	41.4	5.6e-09
WP_012846051.1|793613_794051_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_012846052.1|794333_795620_+|tRNA	histidine--tRNA ligase	tRNA	A0A1V0S921	Catovirus	27.2	4.0e-28
WP_012846053.1|795621_797475_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	23.7	1.5e-07
WP_012846054.1|797551_798736_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_012846055.1|798840_799269_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_012846056.1|799273_800035_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_012846057.1|800668_801226_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_011162146.1|801291_802170_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	29.5	1.0e-22
WP_012846058.1|802257_802920_+	serine dehydratase	NA	NA	NA	NA	NA
WP_012846059.1|802932_803814_+	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA	NA
WP_041822426.1|803815_804136_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA	NA
WP_012846061.1|804203_805046_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003647180.1|805196_805373_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_004895110.1|805479_805923_+	GatB/YqeY domain-containing protein	NA	NA	NA	NA	NA
WP_004895108.1|805950_806910_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.3	9.3e-46
WP_012846062.1|806913_807441_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_004895100.1|807465_808377_+	GTPase Era	NA	NA	NA	NA	NA
WP_012846063.1|808377_809130_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_004895097.1|809424_810342_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_012846064.1|810334_812407_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
