assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000091725.1_ASM9172v1	NC_014215	Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome	1	276536-276649	1	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	Orphan	GGGCCGTTCGGTGTTGGGCTGTTC	24	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	NA|1132aa|up_2|NC_014215.1_269198_272594_-,NA|247aa|up_1|NC_014215.1_272751_273492_+,NA|108aa|down_9|NC_014215.1_291096_291420_-	NA|449aa|up_9|NC_014215.1_261900_263247_+	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|345aa|up_8|NC_014215.1_263472_264507_-	pfam16154, DUF4862, Domain of unknown function (DUF4862)	NA|96aa|up_7|NC_014215.1_264822_265110_-	PRK02251, PRK02251, cell division protein CrgA	NA|245aa|up_6|NC_014215.1_265288_266023_+	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|215aa|up_5|NC_014215.1_266135_266780_+	COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]	NA|285aa|up_4|NC_014215.1_266821_267676_-	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|174aa|up_3|NC_014215.1_267795_268317_-	TIGR04342, hypothetical_protein, EXLDI protein	NA|1132aa|up_2|NC_014215.1_269198_272594_-	NA	NA|247aa|up_1|NC_014215.1_272751_273492_+	NA	NA|481aa|up_0|NC_014215.1_273495_274938_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|404aa|down_0|NC_014215.1_277111_278322_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|452aa|down_1|NC_014215.1_278835_280191_-	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|473aa|down_2|NC_014215.1_280340_281759_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|436aa|down_3|NC_014215.1_281905_283213_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|332aa|down_4|NC_014215.1_283455_284451_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|463aa|down_5|NC_014215.1_284496_285885_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|1023aa|down_6|NC_014215.1_285907_288976_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|318aa|down_7|NC_014215.1_289324_290278_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|264aa|down_8|NC_014215.1_290239_291031_-	pfam13683, rve_3, Integrase core domain	NA|108aa|down_9|NC_014215.1_291096_291420_-	NA
GCF_000091725.1_ASM9172v1	NC_014215	Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome	2	441264-443689	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csb3,cas3,csb2gr5,csb1gr7	csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	Unclear	GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT,GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT	36,36,36	0	0	NA	NA	NA:NA:NA	33,33,33	33	Unclear	csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	NA|100aa|up_9|NC_014215.1_429795_430095_+,NA|92aa|up_6|NC_014215.1_435208_435484_-,NA|80aa|up_4|NC_014215.1_436783_437023_+,NA|172aa|up_1|NC_014215.1_439605_440121_+,NA|169aa|up_0|NC_014215.1_440155_440662_-,NA|426aa|down_9|NC_014215.1_455768_457046_+	NA|100aa|up_9|NC_014215.1_429795_430095_+	NA	NA|960aa|up_8|NC_014215.1_430095_432975_-	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|439aa|up_7|NC_014215.1_433495_434812_-	PRK12489, PRK12489, anaerobic C4-dicarboxylate transporter; Reviewed	NA|92aa|up_6|NC_014215.1_435208_435484_-	NA	NA|250aa|up_5|NC_014215.1_435941_436691_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|80aa|up_4|NC_014215.1_436783_437023_+	NA	NA|348aa|up_3|NC_014215.1_437146_438190_+	cd08252, AL_MDR, Arginate lyase and other MDR family members	NA|409aa|up_2|NC_014215.1_438208_439435_+	PRK06849, PRK06849, hypothetical protein; Provisional	NA|172aa|up_1|NC_014215.1_439605_440121_+	NA	NA|169aa|up_0|NC_014215.1_440155_440662_-	NA	cas2|101aa|down_0|NC_014215.1_443867_444170_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|534aa|down_1|NC_014215.1_444166_445768_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	csb3|334aa|down_2|NC_014215.1_445757_446759_-	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3	cas3|872aa|down_3|NC_014215.1_446755_449371_-	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc	csb2gr5|514aa|down_4|NC_014215.1_449367_450909_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	csb1gr7|400aa|down_5|NC_014215.1_450910_452110_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	NA|425aa|down_6|NC_014215.1_452642_453917_+	PRK08639, PRK08639, threonine dehydratase; Validated	NA|96aa|down_7|NC_014215.1_454390_454678_+	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249)	NA|337aa|down_8|NC_014215.1_454683_455694_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|426aa|down_9|NC_014215.1_455768_457046_+	NA
GCF_000091725.1_ASM9172v1	NC_014215	Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome	3	652209-652301	3	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	Orphan	CAAGCGCCCTGCTGTGTTCGTTT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	NA,NA|209aa|down_2|NC_014215.1_655264_655891_+	NA|145aa|up_9|NC_014215.1_643323_643758_+	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|144aa|up_8|NC_014215.1_643754_644186_+	cd03453, SAV4209_like, SAV4209_like	NA|378aa|up_7|NC_014215.1_644255_645389_+	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|495aa|up_6|NC_014215.1_645410_646895_+	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|158aa|up_5|NC_014215.1_647441_647915_+	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|296aa|up_4|NC_014215.1_647934_648822_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|143aa|up_3|NC_014215.1_648931_649360_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|237aa|up_2|NC_014215.1_649481_650192_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|291aa|up_1|NC_014215.1_650358_651231_+	PRK14345, PRK14345, lipoyl(octanoyl) transferase LipB	NA|317aa|up_0|NC_014215.1_651227_652178_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|216aa|down_0|NC_014215.1_653934_654582_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|132aa|down_1|NC_014215.1_654598_654994_+	cd00387, Ribosomal_L7_L12, Ribosomal protein L7/L12	NA|209aa|down_2|NC_014215.1_655264_655891_+	NA	NA|1159aa|down_3|NC_014215.1_656216_659693_+	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|1297aa|down_4|NC_014215.1_659794_663685_+	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|124aa|down_5|NC_014215.1_664144_664516_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|down_6|NC_014215.1_664515_664986_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|700aa|down_7|NC_014215.1_665156_667256_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|397aa|down_8|NC_014215.1_667490_668681_+	PRK00049, PRK00049, elongation factor Tu; Reviewed	NA|493aa|down_9|NC_014215.1_668874_670353_-	pfam09852, DUF2079, Predicted membrane protein (DUF2079)
GCF_000091725.1_ASM9172v1	NC_014215	Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome	4	775005-775102	4	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	Orphan	GTGGGTCAGCCTGTTGGGCTGACC	24	1	1	775029-775078	NC_014215.1_774992-775041	NA	1	1	Orphan	csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	NA,NA	NA|346aa|up_9|NC_014215.1_762072_763110_+	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators	NA|327aa|up_8|NC_014215.1_763353_764334_+	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems	NA|501aa|up_7|NC_014215.1_764501_766004_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|up_6|NC_014215.1_767054_768083_+	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional	NA|518aa|up_5|NC_014215.1_768377_769931_+	PRK00074, guaA, GMP synthase; Reviewed	NA|296aa|up_4|NC_014215.1_770135_771023_+	pfam09234, DUF1963, Domain of unknown function (DUF1963)	NA|314aa|up_3|NC_014215.1_771073_772015_-	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)	NA|112aa|up_2|NC_014215.1_772314_772650_-	pfam04024, PspC, PspC domain	NA|398aa|up_1|NC_014215.1_772996_774190_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|233aa|up_0|NC_014215.1_774186_774885_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|84aa|down_0|NC_014215.1_775121_775373_-	PRK10457, PRK10457, hypothetical protein; Provisional	NA|339aa|down_1|NC_014215.1_775662_776679_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|337aa|down_2|NC_014215.1_776681_777692_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|347aa|down_3|NC_014215.1_777761_778802_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|252aa|down_4|NC_014215.1_778798_779554_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|418aa|down_5|NC_014215.1_779626_780880_-	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|830aa|down_6|NC_014215.1_781016_783506_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|283aa|down_7|NC_014215.1_784851_785700_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|518aa|down_8|NC_014215.1_785821_787375_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|287aa|down_9|NC_014215.1_787448_788309_+	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
GCF_000091725.1_ASM9172v1	NC_014215	Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, complete genome	5	2215874-2216038	5	CRISPRCasFinder	no		csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	Orphan	CTTCTTCGCCGCCGGCTTCTTGGC	24	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,cas2,cas1,csb3,cas3,csb2gr5,csb1gr7,DinG,WYL	NA|482aa|up_0|NC_014215.1_2214360_2215806_-,NA|81aa|down_7|NC_014215.1_2230073_2230316_+,NA|153aa|down_9|NC_014215.1_2230905_2231364_-	NA|113aa|up_9|NC_014215.1_2202043_2202382_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|452aa|up_8|NC_014215.1_2203191_2204547_-	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]	NA|484aa|up_7|NC_014215.1_2204722_2206174_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|505aa|up_6|NC_014215.1_2206438_2207953_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|281aa|up_5|NC_014215.1_2207952_2208795_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|350aa|up_4|NC_014215.1_2209102_2210152_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|557aa|up_3|NC_014215.1_2210281_2211952_-	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau	NA|438aa|up_2|NC_014215.1_2212099_2213413_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|213aa|up_1|NC_014215.1_2213725_2214364_-	PRK00698, tmk, thymidylate kinase; Validated	NA|482aa|up_0|NC_014215.1_2214360_2215806_-	NA	NA|504aa|down_0|NC_014215.1_2219043_2220555_-	pfam05175, MTS, Methyltransferase small domain	NA|821aa|down_1|NC_014215.1_2220810_2223273_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|335aa|down_2|NC_014215.1_2223269_2224274_-	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only]	NA|215aa|down_3|NC_014215.1_2224273_2224918_-	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|868aa|down_4|NC_014215.1_2224931_2227535_-	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	NA|404aa|down_5|NC_014215.1_2227668_2228880_-	COG1145, NapF, Ferredoxin [Energy production and conversion]	NA|289aa|down_6|NC_014215.1_2229095_2229962_-	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit	NA|81aa|down_7|NC_014215.1_2230073_2230316_+	NA	NA|111aa|down_8|NC_014215.1_2230411_2230744_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|153aa|down_9|NC_014215.1_2230905_2231364_-	NA
