assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000092125.1_ASM9212v1	NC_014212	Meiothermus silvanus DSM 9946, complete sequence	1	698282-699146	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL	Type III-B,Type III-A,Type III-D,Type III-C	GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC,GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC,GTCGCAAACAAAAAGCCCCGTAAGGGGATTGCAAC	35,35,35	0	0	NA	NA	III-A:III-A:III-A	11,11,11	11	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA,NA	csm2gr11|137aa|up_9|NC_014212.1_690829_691240_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|226aa|up_8|NC_014212.1_691236_691914_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|296aa|up_7|NC_014212.1_691910_692798_+	TIGR01903, Hypothetical_protein	csm5gr7|377aa|up_6|NC_014212.1_692794_693925_+	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	NA|85aa|up_5|NC_014212.1_693955_694210_+	pfam07704, PSK_trans_fac, Rv0623-like transcription factor	NA|114aa|up_4|NC_014212.1_694209_694551_+	cd09871, PIN_MtVapC28-VapC30-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC28 and 30 and related proteins	cas6|268aa|up_3|NC_014212.1_694547_695351_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csx1|467aa|up_2|NC_014212.1_695289_696690_+	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	cas1|324aa|up_1|NC_014212.1_696686_697658_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|92aa|up_0|NC_014212.1_697659_697935_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx1|403aa|down_0|NC_014212.1_699166_700375_+	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|360aa|down_1|NC_014212.1_700683_701763_+	pfam13683, rve_3, Integrase core domain	NA|376aa|down_2|NC_014212.1_702083_703211_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|246aa|down_3|NC_014212.1_703219_703957_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|316aa|down_4|NC_014212.1_703953_704901_-	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|188aa|down_5|NC_014212.1_704911_705475_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|217aa|down_6|NC_014212.1_705477_706128_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|248aa|down_7|NC_014212.1_706222_706966_-	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|316aa|down_8|NC_014212.1_707131_708079_-	cd18610, GH130_BT3780-like, Glycosyl hydrolase family 130, such as beta-mammosidase BT3780 and BACOVA_03624	NA|769aa|down_9|NC_014212.1_708242_710549_+	COG3903, COG3903, Predicted ATPase [General function prediction only]
GCF_000092125.1_ASM9212v1	NC_014212	Meiothermus silvanus DSM 9946, complete sequence	2	1221053-1221692	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL	Type I-E	GTATTCCCCGCACACGCGGGGATGAACCG,GTATTCCCCGCACACGCGGGGATGAACCG,GTATTCCCCGCACACGCGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA|59aa|up_8|NC_014212.1_1214181_1214358_+,NA|124aa|down_1|NC_014212.1_1223445_1223817_+	cas3|905aa|up_9|NC_014212.1_1211245_1213960_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|59aa|up_8|NC_014212.1_1214181_1214358_+	NA	cas8e|562aa|up_7|NC_014212.1_1214411_1216097_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|200aa|up_6|NC_014212.1_1216080_1216680_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	NA|177aa|up_5|NC_014212.1_1216676_1217207_+	pfam11159, DUF2939, Protein of unknown function (DUF2939)	cas7|389aa|up_4|NC_014212.1_1217217_1218384_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|233aa|up_3|NC_014212.1_1218385_1219084_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|209aa|up_2|NC_014212.1_1219058_1219685_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|328aa|up_1|NC_014212.1_1219717_1220701_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|126aa|up_0|NC_014212.1_1220654_1221032_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|379aa|down_0|NC_014212.1_1222175_1223312_-	pfam13683, rve_3, Integrase core domain	NA|124aa|down_1|NC_014212.1_1223445_1223817_+	NA	NA|207aa|down_2|NC_014212.1_1223882_1224503_-	cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)	NA|246aa|down_3|NC_014212.1_1224625_1225363_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|618aa|down_4|NC_014212.1_1225365_1227219_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|502aa|down_5|NC_014212.1_1227347_1228853_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|162aa|down_6|NC_014212.1_1229207_1229693_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|228aa|down_7|NC_014212.1_1229715_1230399_+	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family	NA|122aa|down_8|NC_014212.1_1230388_1230754_-	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|258aa|down_9|NC_014212.1_1230844_1231618_-	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily
GCF_000092125.1_ASM9212v1	NC_014212	Meiothermus silvanus DSM 9946, complete sequence	3	2315230-2316092	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no		csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL	Orphan	GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAAC,GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAAC,GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAAC	35,35,35	0	0	NA	NA	III-A:III-A:III-A	11,11,11	11	Orphan	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA|264aa|up_9|NC_014212.1_2306820_2307612_+,NA|122aa|down_1|NC_014212.1_2317805_2318171_+,NA|47aa|down_2|NC_014212.1_2319645_2319786_-	NA|264aa|up_9|NC_014212.1_2306820_2307612_+	NA	NA|149aa|up_8|NC_014212.1_2308091_2308538_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|241aa|up_7|NC_014212.1_2308648_2309371_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|164aa|up_6|NC_014212.1_2309392_2309884_-	PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional	NA|73aa|up_5|NC_014212.1_2309899_2310118_-	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only]	NA|84aa|up_4|NC_014212.1_2310184_2310436_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|436aa|up_3|NC_014212.1_2310464_2311772_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|181aa|up_2|NC_014212.1_2312054_2312597_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|181aa|up_1|NC_014212.1_2312600_2313143_+	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|451aa|up_0|NC_014212.1_2313403_2314756_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|296aa|down_0|NC_014212.1_2316096_2316984_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|122aa|down_1|NC_014212.1_2317805_2318171_+	NA	NA|47aa|down_2|NC_014212.1_2319645_2319786_-	NA	NA|62aa|down_3|NC_014212.1_2320101_2320287_+	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|313aa|down_4|NC_014212.1_2320260_2321199_-	cd11589, Agmatinase_like_1, Agmatinase and related proteins	NA|349aa|down_5|NC_014212.1_2321219_2322266_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|399aa|down_6|NC_014212.1_2322276_2323473_-	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|217aa|down_7|NC_014212.1_2323547_2324198_-	pfam08378, NERD, Nuclease-related domain	NA|176aa|down_8|NC_014212.1_2324323_2324851_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|296aa|down_9|NC_014212.1_2324847_2325735_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
GCF_000092125.1_ASM9212v1	NC_014212	Meiothermus silvanus DSM 9946, complete sequence	4	2317014-2317193	4,4	PILER-CR,CRISPRCasFinder	no		csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL	Orphan	GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAACA,GTCGCAAACCAAAAGCCCCGTAAGGGGATTGCAAC	36,35	0	0	NA	NA	III-A:III-A	2,2	2	Orphan	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA,NA|122aa|down_0|NC_014212.1_2317805_2318171_+,NA|47aa|down_1|NC_014212.1_2319645_2319786_-	NA|149aa|up_9|NC_014212.1_2308091_2308538_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|241aa|up_8|NC_014212.1_2308648_2309371_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|164aa|up_7|NC_014212.1_2309392_2309884_-	PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional	NA|73aa|up_6|NC_014212.1_2309899_2310118_-	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only]	NA|84aa|up_5|NC_014212.1_2310184_2310436_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|436aa|up_4|NC_014212.1_2310464_2311772_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|181aa|up_3|NC_014212.1_2312054_2312597_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|181aa|up_2|NC_014212.1_2312600_2313143_+	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|451aa|up_1|NC_014212.1_2313403_2314756_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|296aa|up_0|NC_014212.1_2316096_2316984_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|122aa|down_0|NC_014212.1_2317805_2318171_+	NA	NA|47aa|down_1|NC_014212.1_2319645_2319786_-	NA	NA|62aa|down_2|NC_014212.1_2320101_2320287_+	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|313aa|down_3|NC_014212.1_2320260_2321199_-	cd11589, Agmatinase_like_1, Agmatinase and related proteins	NA|349aa|down_4|NC_014212.1_2321219_2322266_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|399aa|down_5|NC_014212.1_2322276_2323473_-	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|217aa|down_6|NC_014212.1_2323547_2324198_-	pfam08378, NERD, Nuclease-related domain	NA|176aa|down_7|NC_014212.1_2324323_2324851_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|296aa|down_8|NC_014212.1_2324847_2325735_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|437aa|down_9|NC_014212.1_2325809_2327120_+	pfam05175, MTS, Methyltransferase small domain
GCF_000092125.1_ASM9212v1	NC_014212	Meiothermus silvanus DSM 9946, complete sequence	5	2867641-2867720	5	CRISPRCasFinder	no		csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL	Orphan	GCCACCGAACAGGCGGTAAAGGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA,NA|207aa|down_1|NC_014212.1_2868814_2869435_+	NA|220aa|up_9|NC_014212.1_2854360_2855020_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|367aa|up_8|NC_014212.1_2855553_2856654_+	cd08883, RHO_alpha_C_CMO-like, C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases	NA|277aa|up_7|NC_014212.1_2856816_2857647_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|351aa|up_6|NC_014212.1_2857698_2858751_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|248aa|up_5|NC_014212.1_2858756_2859500_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|383aa|up_4|NC_014212.1_2859554_2860703_-	PRK05388, argJ, bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA|425aa|up_3|NC_014212.1_2860693_2861968_-	TIGR03999, thiol_BshA, N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA|324aa|up_2|NC_014212.1_2862172_2863144_-	PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase; Provisional	NA|314aa|up_1|NC_014212.1_2863173_2864115_-	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|142aa|up_0|NC_014212.1_2864311_2864737_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|226aa|down_0|NC_014212.1_2868051_2868729_-	TIGR04001, thiol_BshB1, bacillithiol biosynthesis deacetylase BshB1	NA|207aa|down_1|NC_014212.1_2868814_2869435_+	NA	NA|206aa|down_2|NC_014212.1_2869452_2870070_-	PRK14402, PRK14402, glycerol-3-phosphate acyltransferase	NA|260aa|down_3|NC_014212.1_2870273_2871053_-	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|212aa|down_4|NC_014212.1_2871142_2871778_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|374aa|down_5|NC_014212.1_2871776_2872898_+	COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|532aa|down_6|NC_014212.1_2873051_2874647_+	PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase	NA|245aa|down_7|NC_014212.1_2874735_2875470_+	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|664aa|down_8|NC_014212.1_2875560_2877552_+	sd00006, TPR, Tetratricopeptide repeat	NA|981aa|down_9|NC_014212.1_2878817_2881760_+	PRK00349, uvrA, excinuclease ABC subunit UvrA
GCF_000092125.1_ASM9212v1	NC_014212	Meiothermus silvanus DSM 9946, complete sequence	6	3054251-3054470	4	CRT	no		csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL	Orphan	CTNCNCTTGAGTACCGGC	18	5	133	3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054269-3054289|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054308-3054328|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054347-3054367|3054386-3054413|3054386-3054413|3054432-3054452|3054432-3054452|3054432-3054452|3054432-3054452|3054432-3054452	NC_014212.1_108020-108000|NC_014212.1_1319944-1319924|NC_014212.1_2238916-2238896|NC_014212.1_2238955-2238935|NC_014212.1_2238994-2238974|NC_014212.1_2239033-2239013|NC_014212.1_2855149-2855129|NC_014212.1_2855188-2855168|NC_014212.1_2855227-2855207|NC_014212.1_3135992-3135972|NC_014212.1_53068-53088|NC_014212.1_53107-53127|NC_014212.1_53146-53166|NC_014212.1_53185-53205|NC_014212.1_1434634-1434654|NC_014212.1_1434673-1434693|NC_014212.1_1784138-1784158|NC_014212.1_2296277-2296297|NC_014212.1_2296316-2296336|NC_014212.1_2296355-2296375|NC_014212.1_2296394-2296414|NC_014212.1_810068-810048|NC_014212.1_810107-810087|NC_014212.1_2055859-2055839|NC_014212.1_2065334-2065314|NC_014212.1_2065373-2065353|NC_014212.1_2065412-2065392|NC_014212.1_2065451-2065431|NC_014212.1_2065490-2065470|NC_014212.1_2065529-2065509|NC_014212.1_546199-546219|NC_014212.1_1228968-1228988|NC_014212.1_2101557-2101577|NC_014212.1_2101596-2101616|NC_014212.1_2101635-2101655|NC_014212.1_2432592-2432612|NC_014212.1_2432631-2432651|NC_014212.1_2574613-2574633|NC_014212.1_2574652-2574672|NC_014212.1_299021-299001|NC_014212.1_2916603-2916583|NC_014213.1_128695-128675|NC_014212.1_108020-108000|NC_014212.1_1319944-1319924|NC_014212.1_2238916-2238896|NC_014212.1_2238955-2238935|NC_014212.1_2238994-2238974|NC_014212.1_2239033-2239013|NC_014212.1_2855149-2855129|NC_014212.1_2855188-2855168|NC_014212.1_2855227-2855207|NC_014212.1_3135992-3135972|NC_014212.1_53068-53088|NC_014212.1_53107-53127|NC_014212.1_53146-53166|NC_014212.1_53185-53205|NC_014212.1_1434634-1434654|NC_014212.1_1434673-1434693|NC_014212.1_1784138-1784158|NC_014212.1_2296277-2296297|NC_014212.1_2296316-2296336|NC_014212.1_2296355-2296375|NC_014212.1_2296394-2296414|NC_014212.1_810068-810048|NC_014212.1_810107-810087|NC_014212.1_2055859-2055839|NC_014212.1_2065334-2065314|NC_014212.1_2065373-2065353|NC_014212.1_2065412-2065392|NC_014212.1_2065451-2065431|NC_014212.1_2065490-2065470|NC_014212.1_2065529-2065509|NC_014212.1_546199-546219|NC_014212.1_1228968-1228988|NC_014212.1_2101557-2101577|NC_014212.1_2101596-2101616|NC_014212.1_2101635-2101655|NC_014212.1_2432592-2432612|NC_014212.1_2432631-2432651|NC_014212.1_2574613-2574633|NC_014212.1_2574652-2574672|NC_014212.1_299021-299001|NC_014212.1_2916603-2916583|NC_014213.1_128695-128675|NC_014212.1_108020-108000|NC_014212.1_1319944-1319924|NC_014212.1_2238916-2238896|NC_014212.1_2238955-2238935|NC_014212.1_2238994-2238974|NC_014212.1_2239033-2239013|NC_014212.1_2855149-2855129|NC_014212.1_2855188-2855168|NC_014212.1_2855227-2855207|NC_014212.1_3135992-3135972|NC_014212.1_53068-53088|NC_014212.1_53107-53127|NC_014212.1_53146-53166|NC_014212.1_53185-53205|NC_014212.1_1434634-1434654|NC_014212.1_1434673-1434693|NC_014212.1_1784138-1784158|NC_014212.1_2296277-2296297|NC_014212.1_2296316-2296336|NC_014212.1_2296355-2296375|NC_014212.1_2296394-2296414|NC_014212.1_810068-810048|NC_014212.1_810107-810087|NC_014212.1_2055859-2055839|NC_014212.1_2065334-2065314|NC_014212.1_2065373-2065353|NC_014212.1_2065412-2065392|NC_014212.1_2065451-2065431|NC_014212.1_2065490-2065470|NC_014212.1_2065529-2065509|NC_014212.1_546199-546219|NC_014212.1_1228968-1228988|NC_014212.1_2101557-2101577|NC_014212.1_2101596-2101616|NC_014212.1_2101635-2101655|NC_014212.1_2432592-2432612|NC_014212.1_2432631-2432651|NC_014212.1_2574613-2574633|NC_014212.1_2574652-2574672|NC_014212.1_299021-299001|NC_014212.1_2916603-2916583|NC_014213.1_128695-128675|NC_014212.1_129486-129513|NC_014212.1_1460135-1460162|NC_014212.1_356441-356421|NC_014212.1_399311-399291|NC_014212.1_399350-399330|NC_014212.1_129532-129552|NC_014212.1_3054471-3054491	NA	5	5	Orphan	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA,NA	NA|122aa|up_9|NC_014212.1_3046071_3046437_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|111aa|up_8|NC_014212.1_3046456_3046789_+	pfam02641, DUF190, Uncharacterized ACR, COG1993	NA|199aa|up_7|NC_014212.1_3046861_3047458_+	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains	NA|103aa|up_6|NC_014212.1_3047484_3047793_+	pfam03059, NAS, Nicotianamine synthase protein	NA|592aa|up_5|NC_014212.1_3047798_3049574_-	COG2720, COG2720, Uncharacterized vancomycin resistance protein [Defense mechanisms]	NA|224aa|up_4|NC_014212.1_3049658_3050330_-	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|177aa|up_3|NC_014212.1_3050399_3050930_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|370aa|up_2|NC_014212.1_3050958_3052068_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|270aa|up_1|NC_014212.1_3052196_3053006_-	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|323aa|up_0|NC_014212.1_3053122_3054091_+	PRK14122, PRK14122, tRNA pseudouridine synthase B; Provisional	NA|159aa|down_0|NC_014212.1_3054551_3055028_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|369aa|down_1|NC_014212.1_3055136_3056243_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|204aa|down_2|NC_014212.1_3056413_3057025_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|243aa|down_3|NC_014212.1_3057344_3058073_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|370aa|down_4|NC_014212.1_3058160_3059270_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|236aa|down_5|NC_014212.1_3059296_3060004_-	COG3246, COG3246, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_6|NC_014212.1_3060006_3060723_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|99aa|down_7|NC_014212.1_3060833_3061130_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|357aa|down_8|NC_014212.1_3061215_3062286_-	pfam13683, rve_3, Integrase core domain	NA|150aa|down_9|NC_014212.1_3062414_3062864_+	pfam01252, Peptidase_A8, Signal peptidase (SPase) II
GCF_000092125.1_ASM9212v1	NC_014213	Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence	1	125440-125762	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,WYL,DinG,cas2,cas1,cas4,csm6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas7,cas8c,cas5,cas3,cas8a8,cas6	Orphan	GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC,GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC,GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC	37,37,37	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	4,4,4	4	Orphan	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA|309aa|up_5|NC_014213.1_117797_118724_-,NA|210aa|down_1|NC_014213.1_128039_128669_+,NA|93aa|down_2|NC_014213.1_128744_129023_+,NA|74aa|down_5|NC_014213.1_130751_130973_-	NA|149aa|up_9|NC_014213.1_113170_113617_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|734aa|up_8|NC_014213.1_113654_115856_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|357aa|up_7|NC_014213.1_115942_117013_+	cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria	NA|110aa|up_6|NC_014213.1_117199_117529_+	cd18682, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|309aa|up_5|NC_014213.1_117797_118724_-	NA	NA|362aa|up_4|NC_014213.1_118943_120029_+	pfam13683, rve_3, Integrase core domain	NA|357aa|up_3|NC_014213.1_120120_121191_+	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|281aa|up_2|NC_014213.1_121203_122046_+	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|253aa|up_1|NC_014213.1_122042_122801_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|350aa|up_0|NC_014213.1_122800_123850_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|421aa|down_0|NC_014213.1_125888_127151_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|210aa|down_1|NC_014213.1_128039_128669_+	NA	NA|93aa|down_2|NC_014213.1_128744_129023_+	NA	NA|465aa|down_3|NC_014213.1_129053_130448_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|69aa|down_4|NC_014213.1_130529_130736_-	PRK14861, tatA, twin arginine translocase protein A; Provisional	NA|74aa|down_5|NC_014213.1_130751_130973_-	NA	NA|492aa|down_6|NC_014213.1_131120_132596_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|359aa|down_7|NC_014213.1_132748_133825_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|224aa|down_8|NC_014213.1_134196_134868_-	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|383aa|down_9|NC_014213.1_134884_136033_-	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]
GCF_000092125.1_ASM9212v1	NC_014213	Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence	2	127195-127518	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,WYL,DinG,cas2,cas1,cas4,csm6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas7,cas8c,cas5,cas3,cas8a8,cas6	Orphan	GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC,GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC,GTTTCAATCCTCACTCGAGCTTTCGCCCGAGTGCAAC	37,37,37	0	0	NA	NA	I-C,III-B:I-C,III-B:I-C,III-B	4,4,4	4	Orphan	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA|309aa|up_6|NC_014213.1_117797_118724_-,NA|210aa|down_0|NC_014213.1_128039_128669_+,NA|93aa|down_1|NC_014213.1_128744_129023_+,NA|74aa|down_4|NC_014213.1_130751_130973_-	NA|734aa|up_9|NC_014213.1_113654_115856_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|357aa|up_8|NC_014213.1_115942_117013_+	cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria	NA|110aa|up_7|NC_014213.1_117199_117529_+	cd18682, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|309aa|up_6|NC_014213.1_117797_118724_-	NA	NA|362aa|up_5|NC_014213.1_118943_120029_+	pfam13683, rve_3, Integrase core domain	NA|357aa|up_4|NC_014213.1_120120_121191_+	cd13549, PBP2_Fbp_like_3, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|281aa|up_3|NC_014213.1_121203_122046_+	COG4132, COG4132, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|253aa|up_2|NC_014213.1_122042_122801_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|350aa|up_1|NC_014213.1_122800_123850_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|421aa|up_0|NC_014213.1_125888_127151_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|210aa|down_0|NC_014213.1_128039_128669_+	NA	NA|93aa|down_1|NC_014213.1_128744_129023_+	NA	NA|465aa|down_2|NC_014213.1_129053_130448_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|69aa|down_3|NC_014213.1_130529_130736_-	PRK14861, tatA, twin arginine translocase protein A; Provisional	NA|74aa|down_4|NC_014213.1_130751_130973_-	NA	NA|492aa|down_5|NC_014213.1_131120_132596_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|359aa|down_6|NC_014213.1_132748_133825_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|224aa|down_7|NC_014213.1_134196_134868_-	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|383aa|down_8|NC_014213.1_134884_136033_-	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only]	NA|456aa|down_9|NC_014213.1_136523_137891_-	pfam00791, ZU5, ZU5 domain
GCF_000092125.1_ASM9212v1	NC_014213	Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence	3	318307-319855	3,3,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,WYL,cas3,cas8a8,cas7,cas5,cas6	csa3,WYL,DinG,cas2,cas1,cas4,csm6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas7,cas8c,cas5,cas3,cas8a8,cas6	Unclear	GTTTCAATCTCCTACGGAGTATTTACAGCTTATACC,GTTTCAATCTCCTACGGAGTATTTACAGCTTATACC,GTTTCAATCTCCTACGGAGTATTTACAGCTTATACC	36,36,36	0	0	NA	NA	NA:NA:NA	21,20,20	21	Unclear	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA|58aa|up_4|NC_014213.1_316197_316371_+,cas8a8|464aa|down_5|NC_014213.1_325867_327259_+,cas5|250aa|down_7|NC_014213.1_328271_329021_+	NA|438aa|up_9|NC_014213.1_310401_311715_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|672aa|up_8|NC_014213.1_311744_313760_-	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]	NA|102aa|up_7|NC_014213.1_314104_314410_-	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|130aa|up_6|NC_014213.1_314523_314913_-	pfam12747, DdrB, DdrB-like protein	NA|365aa|up_5|NC_014213.1_315084_316179_+	pfam13683, rve_3, Integrase core domain	NA|58aa|up_4|NC_014213.1_316197_316371_+	NA	NA|202aa|up_3|NC_014213.1_316465_317071_+	smart01043, BTAD, Bacterial transcriptional activator domain	NA|179aa|up_2|NC_014213.1_316980_317517_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|125aa|up_1|NC_014213.1_317544_317919_-	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|94aa|up_0|NC_014213.1_317899_318181_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	cas2|94aa|down_0|NC_014213.1_320098_320380_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NC_014213.1_320389_321370_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas4|191aa|down_2|NC_014213.1_321369_321942_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	WYL|323aa|down_3|NC_014213.1_322120_323089_+	pfam13280, WYL, WYL domain	cas3|851aa|down_4|NC_014213.1_323324_325877_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8a8|464aa|down_5|NC_014213.1_325867_327259_+	NA	cas7|336aa|down_6|NC_014213.1_327255_328263_+	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas5|250aa|down_7|NC_014213.1_328271_329021_+	NA	cas6|269aa|down_8|NC_014213.1_329020_329827_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|375aa|down_9|NC_014213.1_330969_332093_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed
GCF_000092125.1_ASM9212v1	NC_014213	Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence	4	333510-333898	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,WYL,cas3,cas8a8,cas7,cas5,cas6	csa3,WYL,DinG,cas2,cas1,cas4,csm6,csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas7,cas8c,cas5,cas3,cas8a8,cas6	Unclear	GTTGCAAAAGCGACTAACCTCGTAGAGGATTGAAAC,GTTGCAAAAGCGACTAACCTCGTAGAGGATTGAAAC,GTTGCAAAAGCGACTAACCTCGTAGAGGATTGAAAC	36,36,36	0	0	NA	NA	NA:NA:NA	4,4,5	5	Unclear	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	cas8a8|464aa|up_5|NC_014213.1_325867_327259_+,cas5|250aa|up_3|NC_014213.1_328271_329021_+,NA|125aa|down_0|NC_014213.1_333991_334366_+,NA|13aa|down_1|NC_014213.1_334728_334767_+,NA|256aa|down_3|NC_014213.1_336252_337020_-	cas1|327aa|up_9|NC_014213.1_320389_321370_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas4|191aa|up_8|NC_014213.1_321369_321942_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	WYL|323aa|up_7|NC_014213.1_322120_323089_+	pfam13280, WYL, WYL domain	cas3|851aa|up_6|NC_014213.1_323324_325877_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8a8|464aa|up_5|NC_014213.1_325867_327259_+	NA	cas7|336aa|up_4|NC_014213.1_327255_328263_+	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas5|250aa|up_3|NC_014213.1_328271_329021_+	NA	cas6|269aa|up_2|NC_014213.1_329020_329827_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|375aa|up_1|NC_014213.1_330969_332093_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|363aa|up_0|NC_014213.1_332339_333428_+	pfam13683, rve_3, Integrase core domain	NA|125aa|down_0|NC_014213.1_333991_334366_+	NA	NA|13aa|down_1|NC_014213.1_334728_334767_+	NA	NA|125aa|down_2|NC_014213.1_335296_335671_-	pfam04255, DUF433, Protein of unknown function (DUF433)	NA|256aa|down_3|NC_014213.1_336252_337020_-	NA	NA|275aa|down_4|NC_014213.1_337576_338401_-	pfam01063, Aminotran_4, Amino-transferase class IV	NA|692aa|down_5|NC_014213.1_338417_340493_-	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|315aa|down_6|NC_014213.1_340618_341563_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|86aa|down_7|NC_014213.1_342448_342706_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|96aa|down_8|NC_014213.1_342769_343057_+	PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase; Provisional	NA|267aa|down_9|NC_014213.1_343463_344264_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000092125.1_ASM9212v1	NC_014214	Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence	1	108855-109381	1	CRISPRCasFinder	no	c2c4_V-U1	Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	Type V-U1	AGCCTCTGAGCTAGGCGTTGCTAC	24	0	0	NA	NA	NA	7	7	TypeV-U1	csa3,Cas14u_CAS-V,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csx1,cas1,cas2,c2c9_V-U4,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,DEDDh,WYL,DinG,cas4,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,cas8c,cas8a8,c2c10_CAS-V-U3,cas14k,csx16,c2c4_V-U1	NA|189aa|up_7|NC_014214.1_97516_98083_-,NA|128aa|up_6|NC_014214.1_98276_98660_-,NA|354aa|up_5|NC_014214.1_98656_99718_-,NA|328aa|up_3|NC_014214.1_103931_104915_-,NA|106aa|up_1|NC_014214.1_107252_107570_-,NA|129aa|down_1|NC_014214.1_111282_111669_-,NA|252aa|down_2|NC_014214.1_111730_112486_-,NA|148aa|down_3|NC_014214.1_112523_112967_-,NA|171aa|down_7|NC_014214.1_117483_117996_+,NA|209aa|down_8|NC_014214.1_118024_118651_+	NA|310aa|up_9|NC_014214.1_94693_95623_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|525aa|up_8|NC_014214.1_95840_97415_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|189aa|up_7|NC_014214.1_97516_98083_-	NA	NA|128aa|up_6|NC_014214.1_98276_98660_-	NA	NA|354aa|up_5|NC_014214.1_98656_99718_-	NA	NA|1126aa|up_4|NC_014214.1_99720_103098_-	cd09178, PLDc_N_Snf2_like, N-terminal putative catalytic domain of uncharacterized HKD family nucleases fused to putative helicases from the Snf2-like family	NA|328aa|up_3|NC_014214.1_103931_104915_-	NA	NA|746aa|up_2|NC_014214.1_104898_107136_-	NF033455, BREX_6_MTaseX, BREX-6 system adenine-specific DNA-methyltransferase PglX	NA|106aa|up_1|NC_014214.1_107252_107570_-	NA	NA|292aa|up_0|NC_014214.1_107602_108478_-	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	c2c4_V-U1|537aa|down_0|NC_014214.1_109532_111143_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|129aa|down_1|NC_014214.1_111282_111669_-	NA	NA|252aa|down_2|NC_014214.1_111730_112486_-	NA	NA|148aa|down_3|NC_014214.1_112523_112967_-	NA	NA|92aa|down_4|NC_014214.1_113159_113435_-	pfam06271, RDD, RDD family	NA|674aa|down_5|NC_014214.1_113453_115475_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|642aa|down_6|NC_014214.1_115574_117500_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|171aa|down_7|NC_014214.1_117483_117996_+	NA	NA|209aa|down_8|NC_014214.1_118024_118651_+	NA	NA|237aa|down_9|NC_014214.1_118697_119408_-	pfam04539, Sigma70_r3, Sigma-70 region 3
