assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000092325.1_ASM9232v1	NC_014169	Bifidobacterium longum subsp. longum JDM301, complete sequence	1	321251-321336	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	GACAGCTCCCGCCAGCGGGAGCACTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA|210aa|up_5|NC_014169.1_314229_314859_+,NA|323aa|up_3|NC_014169.1_316235_317204_-,NA|681aa|down_5|NC_014169.1_327972_330015_+	NA|245aa|up_9|NC_014169.1_308725_309460_+	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|889aa|up_8|NC_014169.1_309543_312210_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|94aa|up_7|NC_014169.1_312320_312602_+	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|475aa|up_6|NC_014169.1_312808_314233_+	pfam02646, RmuC, RmuC family	NA|210aa|up_5|NC_014169.1_314229_314859_+	NA	NA|283aa|up_4|NC_014169.1_314952_315801_+	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|323aa|up_3|NC_014169.1_316235_317204_-	NA	NA|100aa|up_2|NC_014169.1_317786_318086_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|514aa|up_1|NC_014169.1_318089_319631_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|500aa|up_0|NC_014169.1_319655_321155_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|355aa|down_0|NC_014169.1_321450_322515_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|105aa|down_1|NC_014169.1_322525_322840_+	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|538aa|down_2|NC_014169.1_323265_324879_+	PRK07208, PRK07208, hypothetical protein; Provisional	NA|690aa|down_3|NC_014169.1_325084_327154_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|130aa|down_4|NC_014169.1_327461_327851_+	PRK09239, PRK09239, chorismate mutase; Provisional	NA|681aa|down_5|NC_014169.1_327972_330015_+	NA	NA|912aa|down_6|NC_014169.1_330486_333222_-	NF000540, alt_ValS, valine--tRNA ligase	NA|509aa|down_7|NC_014169.1_333365_334892_-	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|229aa|down_8|NC_014169.1_334953_335640_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|261aa|down_9|NC_014169.1_335698_336481_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000092325.1_ASM9232v1	NC_014169	Bifidobacterium longum subsp. longum JDM301, complete sequence	2	1589818-1589973	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	AGCGTCGGCCTCGGAGCGGGTACG	24	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA,NA	NA|466aa|up_9|NC_014169.1_1569472_1570870_-	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|489aa|up_8|NC_014169.1_1570982_1572449_-	cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases	NA|276aa|up_7|NC_014169.1_1572757_1573585_+	cd19126, AKR_AKR5A_5G, AKR5A and AKR5G families of aldo-keto reductase (AKR)	NA|167aa|up_6|NC_014169.1_1579708_1580209_-	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|626aa|up_5|NC_014169.1_1580304_1582182_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|137aa|up_4|NC_014169.1_1582387_1582798_-	pfam13811, DUF4186, Domain of unknown function (DUF4186)	NA|1186aa|up_3|NC_014169.1_1582910_1586468_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|267aa|up_2|NC_014169.1_1586502_1587303_-	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|321aa|up_1|NC_014169.1_1587937_1588900_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|183aa|up_0|NC_014169.1_1588899_1589448_-	PRK14771, PRK14771, lipoprotein signal peptidase; Provisional	NA|101aa|down_0|NC_014169.1_1590988_1591291_-	pfam02325, YGGT, YGGT family	NA|160aa|down_1|NC_014169.1_1591412_1591892_-	pfam04472, SepF, Cell division protein SepF	NA|401aa|down_2|NC_014169.1_1591904_1593107_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|415aa|down_3|NC_014169.1_1593218_1594463_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|491aa|down_4|NC_014169.1_1594613_1596086_-	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|315aa|down_5|NC_014169.1_1596520_1597465_+	cd01170, THZ_kinase, 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz	NA|918aa|down_6|NC_014169.1_1597547_1600301_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|403aa|down_7|NC_014169.1_1600337_1601546_-	COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]	NA|270aa|down_8|NC_014169.1_1601672_1602482_+	pfam08543, Phos_pyr_kin, Phosphomethylpyrimidine kinase	NA|126aa|down_9|NC_014169.1_1602545_1602923_+	pfam01910, Thiamine_BP, Thiamine-binding protein
GCF_000092325.1_ASM9232v1	NC_014169	Bifidobacterium longum subsp. longum JDM301, complete sequence	3	2052432-2052517	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	GGCCCTGAGCGTGCGGGCGCGGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA|51aa|up_8|NC_014169.1_2042172_2042325_-,NA|30aa|up_5|NC_014169.1_2044517_2044607_-,NA|211aa|up_4|NC_014169.1_2044798_2045431_-,NA|243aa|down_1|NC_014169.1_2054597_2055326_+,NA|104aa|down_6|NC_014169.1_2062475_2062787_+	NA|539aa|up_9|NC_014169.1_2040397_2042014_+	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|51aa|up_8|NC_014169.1_2042172_2042325_-	NA	NA|297aa|up_7|NC_014169.1_2042647_2043538_+	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|233aa|up_6|NC_014169.1_2043668_2044367_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|30aa|up_5|NC_014169.1_2044517_2044607_-	NA	NA|211aa|up_4|NC_014169.1_2044798_2045431_-	NA	NA|513aa|up_3|NC_014169.1_2045558_2047097_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|375aa|up_2|NC_014169.1_2047111_2048236_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|388aa|up_1|NC_014169.1_2048333_2049497_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|159aa|up_0|NC_014169.1_2049498_2049975_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|356aa|down_0|NC_014169.1_2053322_2054390_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|243aa|down_1|NC_014169.1_2054597_2055326_+	NA	NA|348aa|down_2|NC_014169.1_2055366_2056410_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|523aa|down_3|NC_014169.1_2056942_2058511_-	COG3534, AbfA, Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]	NA|267aa|down_4|NC_014169.1_2059320_2060121_-	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|727aa|down_5|NC_014169.1_2060327_2062508_-	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|104aa|down_6|NC_014169.1_2062475_2062787_+	NA	NA|304aa|down_7|NC_014169.1_2062783_2063695_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|181aa|down_8|NC_014169.1_2063776_2064319_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|332aa|down_9|NC_014169.1_2064418_2065414_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_000092325.1_ASM9232v1	NC_014169	Bifidobacterium longum subsp. longum JDM301, complete sequence	4	2189090-2189164	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,WYL,DEDDh,casR	Orphan	TCTGTCCCGGTTGCCCCAAAAGAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,WYL,DEDDh,casR	NA|59aa|up_0|NC_014169.1_2188097_2188274_+,NA	NA|315aa|up_9|NC_014169.1_2177578_2178523_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|298aa|up_8|NC_014169.1_2178599_2179493_-	COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NC_014169.1_2179604_2180372_-	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|421aa|up_6|NC_014169.1_2180373_2181636_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|264aa|up_5|NC_014169.1_2181825_2182617_-	PRK08628, PRK08628, SDR family oxidoreductase	NA|428aa|up_4|NC_014169.1_2182757_2184041_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|343aa|up_3|NC_014169.1_2184252_2185281_+	cd06296, PBP1_CatR-like, ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation	NA|483aa|up_2|NC_014169.1_2185262_2186711_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|317aa|up_1|NC_014169.1_2186707_2187658_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|59aa|up_0|NC_014169.1_2188097_2188274_+	NA	NA|485aa|down_0|NC_014169.1_2189269_2190724_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|371aa|down_1|NC_014169.1_2190860_2191973_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|439aa|down_2|NC_014169.1_2192079_2193396_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|531aa|down_3|NC_014169.1_2193555_2195148_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|621aa|down_4|NC_014169.1_2195150_2197013_-	COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|311aa|down_5|NC_014169.1_2197101_2198034_+	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|418aa|down_6|NC_014169.1_2198127_2199381_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|442aa|down_7|NC_014169.1_2199426_2200752_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|449aa|down_8|NC_014169.1_2201001_2202348_+	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|376aa|down_9|NC_014169.1_2202551_2203679_-	cd02810, DHOD_DHPD_FMN, Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain
