assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000092405.1_ASM9240v1	NC_014220	Syntrophothermus lipocalidus DSM 12680, complete sequence	1	1356379-1356472	1	CRISPRCasFinder	no		WYL,cas3,DinG,csa3,cas6,cas2,cas1,cas4,cas5,cas7,cas8b2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8c	Orphan	GGGTATTGTCTTCACCACAGTCCCTCAACC	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DinG,csa3,cas6,cas2,cas1,cas4,cas5,cas7,cas8b2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8c	NA|583aa|up_9|NC_014220.1_1342661_1344410_-,NA|87aa|up_6|NC_014220.1_1347399_1347660_-,NA|80aa|up_5|NC_014220.1_1347748_1347988_-,NA|198aa|up_3|NC_014220.1_1349311_1349905_-,NA|125aa|down_3|NC_014220.1_1362673_1363048_-	NA|583aa|up_9|NC_014220.1_1342661_1344410_-	NA	NA|587aa|up_8|NC_014220.1_1344528_1346289_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|313aa|up_7|NC_014220.1_1346418_1347357_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|87aa|up_6|NC_014220.1_1347399_1347660_-	NA	NA|80aa|up_5|NC_014220.1_1347748_1347988_-	NA	NA|266aa|up_4|NC_014220.1_1348219_1349017_-	pfam00072, Response_reg, Response regulator receiver domain	NA|198aa|up_3|NC_014220.1_1349311_1349905_-	NA	NA|722aa|up_2|NC_014220.1_1349915_1352081_-	pfam11369, DUF3160, Protein of unknown function (DUF3160)	NA|245aa|up_1|NC_014220.1_1352217_1352952_-	COG2859, COG2859, Uncharacterized protein conserved in bacteria [Function unknown]	NA|280aa|up_0|NC_014220.1_1353149_1353989_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|1073aa|down_0|NC_014220.1_1356956_1360175_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|446aa|down_1|NC_014220.1_1360380_1361718_-	pfam02646, RmuC, RmuC family	NA|245aa|down_2|NC_014220.1_1361796_1362531_-	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|125aa|down_3|NC_014220.1_1362673_1363048_-	NA	NA|131aa|down_4|NC_014220.1_1363148_1363541_-	pfam05154, TM2, TM2 domain	NA|226aa|down_5|NC_014220.1_1363570_1364248_-	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|723aa|down_6|NC_014220.1_1364460_1366629_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|291aa|down_7|NC_014220.1_1366658_1367531_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|656aa|down_8|NC_014220.1_1367552_1369520_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|169aa|down_9|NC_014220.1_1369503_1370010_-	pfam09402, MSC, Man1-Src1p-C-terminal domain
GCF_000092405.1_ASM9240v1	NC_014220	Syntrophothermus lipocalidus DSM 12680, complete sequence	2	1385517-1395709	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	WYL,cas3,DinG,csa3,cas6,cas2,cas1,cas4,cas5,cas7,cas8b2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8c	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCAATCCCACTATGGTTCGATTGGATC,GTTTCAATCCCACTATGGTTCGATTGGATC,GTTTCAATCCCACTATGGTTCGATTGGATC	30,30,30	0	0	NA	NA	I-A,II-B,III-A:I-A,II-B,III-A:I-A,II-B,III-A	153,152,152	153	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	WYL,cas3,DinG,csa3,cas6,cas2,cas1,cas4,cas5,cas7,cas8b2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8c	NA|131aa|up_7|NC_014220.1_1376933_1377326_-,NA|103aa|up_2|NC_014220.1_1381490_1381799_-,NA|66aa|down_1|NC_014220.1_1396695_1396893_-,cas8b2|573aa|down_8|NC_014220.1_1402896_1404615_-,NA|549aa|down_9|NC_014220.1_1404955_1406602_-	NA|265aa|up_9|NC_014220.1_1374687_1375482_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|338aa|up_8|NC_014220.1_1375641_1376655_-	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold	NA|131aa|up_7|NC_014220.1_1376933_1377326_-	NA	NA|71aa|up_6|NC_014220.1_1377322_1377535_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|346aa|up_5|NC_014220.1_1378027_1379065_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|353aa|up_4|NC_014220.1_1379022_1380081_+	pfam10776, DUF2600, Protein of unknown function (DUF2600)	NA|227aa|up_3|NC_014220.1_1380238_1380919_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|103aa|up_2|NC_014220.1_1381490_1381799_-	NA	NA|500aa|up_1|NC_014220.1_1382097_1383597_-	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	NA|346aa|up_0|NC_014220.1_1383965_1385003_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	cas6|259aa|down_0|NC_014220.1_1395922_1396699_-	cd09759, Cas6_I-A, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|66aa|down_1|NC_014220.1_1396695_1396893_-	NA	cas2|89aa|down_2|NC_014220.1_1396917_1397184_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|337aa|down_3|NC_014220.1_1397189_1398200_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|180aa|down_4|NC_014220.1_1398228_1398768_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|761aa|down_5|NC_014220.1_1398748_1401031_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|236aa|down_6|NC_014220.1_1401064_1401772_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|364aa|down_7|NC_014220.1_1401789_1402881_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|573aa|down_8|NC_014220.1_1402896_1404615_-	NA	NA|549aa|down_9|NC_014220.1_1404955_1406602_-	NA
GCF_000092405.1_ASM9240v1	NC_014220	Syntrophothermus lipocalidus DSM 12680, complete sequence	3	1597645-1605566	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas2,cas1,cas4,cas7,cas8c,cas5	WYL,cas3,DinG,csa3,cas6,cas2,cas1,cas4,cas5,cas7,cas8b2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8c	Type I-U, Type I-U?,Type I-C	GTTTCAATCCACGCTCCCGCGCGGGGAGCGAC,GTTTCAATCCACGCTCCCGCGCGGGGAGCGAC,GTTTCAATCCACGCTCCCGCGCGGGGAGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	119,119,119	119	TypeI-U,TypeI-U?,TypeI-C	WYL,cas3,DinG,csa3,cas6,cas2,cas1,cas4,cas5,cas7,cas8b2,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8c	NA,NA	NA|219aa|up_9|NC_014220.1_1588560_1589217_-	COG2864, FdnI, Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]	NA|82aa|up_8|NC_014220.1_1589238_1589484_-	pfam02256, Fe_hyd_SSU, Iron hydrogenase small subunit	NA|402aa|up_7|NC_014220.1_1589611_1590817_-	TIGR02512, Periplasmic_hydrogenase_large_subunit, [FeFe] hydrogenase, group A	NA|524aa|up_6|NC_014220.1_1591251_1592823_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|503aa|up_5|NC_014220.1_1593207_1594716_+	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|130aa|up_4|NC_014220.1_1594768_1595158_+	TIGR00320, Desulfoferrodoxin_homolog, desulfoferrodoxin	NA|280aa|up_3|NC_014220.1_1595200_1596040_+	COG1600, COG1600, Uncharacterized Fe-S protein [Energy production and conversion]	NA|242aa|up_2|NC_014220.1_1596069_1596795_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|75aa|up_1|NC_014220.1_1596880_1597105_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|77aa|up_0|NC_014220.1_1597101_1597332_+	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	cas2|97aa|down_0|NC_014220.1_1605806_1606097_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NC_014220.1_1606108_1607140_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|227aa|down_2|NC_014220.1_1607151_1607832_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas7|369aa|down_3|NC_014220.1_1607834_1608941_-	TIGR02589, conserved_hypothetical_protein, CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	cas8c|608aa|down_4|NC_014220.1_1608956_1610780_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|257aa|down_5|NC_014220.1_1610760_1611531_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|725aa|down_6|NC_014220.1_1611500_1613675_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|67aa|down_7|NC_014220.1_1613871_1614072_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|75aa|down_8|NC_014220.1_1614068_1614293_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|286aa|down_9|NC_014220.1_1614941_1615799_-	PRK00811, PRK00811, polyamine aminopropyltransferase
