The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_014153	Thiomonas intermedia K12, complete genome	3396378	1626836	1690925	3396378	transposase,holin,integrase	Acidithiobacillus_phage(21.43%)	48	1627323:1627341	1692364:1692382
WP_013123163.1|1626836_1628378_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	39.9	8.1e-92
1627323:1627341	attL	GCGCGCCAGCGCCTCCTGG	NA	NA	NA	NA
WP_155816257.1|1628447_1628837_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5WJH4	Leptospira_phage	33.3	1.1e-05
WP_013123165.1|1628793_1629162_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_013123167.1|1629569_1629911_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_013122322.1|1630938_1631964_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041608618.1|1632660_1633542_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_013123171.1|1633580_1636253_-	type III restriction endonuclease subunit R	NA	NA	NA	NA	NA
WP_013123172.1|1636258_1637785_-	site-specific DNA-methyltransferase	NA	A0A220NUF4	Escherichia_phage	41.0	6.6e-70
WP_013123173.1|1637827_1638334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123174.1|1638333_1639527_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_013123175.1|1639928_1641275_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_013123176.1|1641276_1641540_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013123178.1|1644258_1645455_-|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	44.3	3.7e-84
WP_155816258.1|1645676_1645898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123179.1|1645903_1646179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123180.1|1646196_1648599_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_013123181.1|1648595_1648997_-	mobilization protein	NA	NA	NA	NA	NA
WP_013123182.1|1649526_1649748_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013123183.1|1650272_1650824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123184.1|1651405_1652938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123185.1|1653517_1656328_+	class I SAM-dependent DNA methyltransferase	NA	Q6NE04	Leptospira_phage	33.9	2.5e-123
WP_013123186.1|1656399_1656612_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_013123187.1|1656611_1657010_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_013123188.1|1657010_1659089_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_013123189.1|1659081_1660287_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_013123190.1|1660333_1660654_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_013123191.1|1660640_1660925_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013123192.1|1662162_1662432_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_013123193.1|1662418_1662787_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_013123194.1|1663040_1663568_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	43.8	3.9e-30
WP_013123196.1|1664758_1665496_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	59.3	2.7e-77
WP_013122263.1|1668327_1669149_+	ATPase AAA	NA	A0A2L1IVB6	Escherichia_phage	35.1	4.3e-31
WP_013121992.1|1670434_1672132_-|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_041608402.1|1672565_1673741_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_041608403.1|1673791_1674499_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.1	9.1e-14
WP_013123199.1|1674485_1675250_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.1	7.2e-17
WP_013123200.1|1675236_1676271_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_013123201.1|1676267_1677137_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_013123202.1|1677385_1678060_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_013123203.1|1678082_1679996_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	38.3	2.5e-119
WP_013123204.1|1680006_1681617_+|holin	choline dehydrogenase	holin	A0A1V0S9J5	Catovirus	29.7	1.5e-51
WP_013123205.1|1681631_1683947_+	arylsulfatase	NA	NA	NA	NA	NA
WP_013123206.1|1684011_1685370_+	MFS transporter	NA	NA	NA	NA	NA
WP_013123207.1|1685575_1686562_+	transporter	NA	NA	NA	NA	NA
WP_013123208.1|1686678_1688184_+	MFS transporter	NA	NA	NA	NA	NA
WP_155816259.1|1688216_1688456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123210.1|1688593_1689331_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	56.6	2.4e-70
WP_013123211.1|1689380_1690925_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	56.3	2.0e-159
1692364:1692382	attR	CCAGGAGGCGCTGGCGCGC	NA	NA	NA	NA
>prophage 2
NC_014153	Thiomonas intermedia K12, complete genome	3396378	2002991	2068291	3396378	transposase,integrase,tRNA	Bacillus_phage(13.33%)	52	2049720:2049735	2071668:2071683
WP_013123464.1|2002991_2005832_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.2	2.5e-139
WP_013106244.1|2006067_2006400_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	33.3	1.1e-09
WP_013123465.1|2006547_2008251_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_041608418.1|2008325_2010305_-	bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase	NA	NA	NA	NA	NA
WP_013123467.1|2010291_2011206_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_013123468.1|2011210_2012341_-	histidinol-phosphate transaminase	NA	A0A1X7BZP2	Faustovirus	25.7	1.1e-16
WP_013123469.1|2012376_2013474_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_013123470.1|2013480_2014584_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.5	1.1e-85
WP_013123471.1|2014590_2017197_-	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	30.4	3.7e-105
WP_013106252.1|2017637_2018330_+	OmpA family protein	NA	NA	NA	NA	NA
WP_013123472.1|2018504_2019863_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_013123473.1|2019999_2020872_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_013123474.1|2020916_2023244_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.4	3.7e-64
WP_013123475.1|2023795_2024818_+|integrase	site-specific integrase	integrase	W6MYA3	Pseudomonas_phage	42.9	1.4e-63
WP_155816255.1|2025744_2026876_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.7	4.6e-52
WP_081440402.1|2027101_2027353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123476.1|2027488_2027962_+	AAA family ATPase	NA	A0A2R3UAQ8	Siphoviridae_environmental_samples	53.6	2.1e-27
WP_013123477.1|2028314_2028932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123478.1|2028979_2029393_-	DUF2924 domain-containing protein	NA	NA	NA	NA	NA
WP_013123480.1|2029824_2030499_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	39.3	1.3e-33
WP_013123481.1|2030701_2031469_+	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA	NA
WP_013123482.1|2031425_2032802_+	DNA polymerase Y family protein	NA	NA	NA	NA	NA
WP_013123483.1|2032809_2035923_+	error-prone DNA polymerase	NA	A0A1C9LWS4	Streptomyces_phage	27.5	6.4e-96
WP_013123484.1|2036035_2036641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123485.1|2036940_2038044_-	replication C family protein	NA	NA	NA	NA	NA
WP_013123486.1|2038040_2039030_-	AAA family ATPase	NA	A0A0E3GMB2	Rhodoferax_phage	27.5	2.0e-11
WP_013104997.1|2039022_2039229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123487.1|2039534_2040197_+	DUF433 domain-containing protein	NA	NA	NA	NA	NA
WP_013123488.1|2040193_2040616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041608660.1|2041494_2041812_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_013123490.1|2041811_2043137_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_013123491.1|2043429_2043726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123492.1|2044033_2044363_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_013123493.1|2044563_2044776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123494.1|2045085_2046339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041608661.1|2047924_2048335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123497.1|2048541_2049093_-	TMEM165/GDT1 family protein	NA	NA	NA	NA	NA
WP_155816265.1|2049134_2050363_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	82.4	3.9e-129
2049720:2049735	attL	GGTGGTGCGCACCACC	NA	NA	NA	NA
WP_013123501.1|2052917_2053493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155816266.1|2053721_2054225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123503.1|2054785_2055445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123504.1|2055458_2055911_+	DUF2844 domain-containing protein	NA	NA	NA	NA	NA
WP_155816267.1|2055930_2057247_+	DUF3443 family protein	NA	NA	NA	NA	NA
WP_155816255.1|2058471_2059604_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	40.7	4.6e-52
WP_013123507.1|2059726_2060356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123508.1|2060454_2061096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155816331.1|2061515_2061767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013123511.1|2061760_2061967_-	DUF3563 domain-containing protein	NA	NA	NA	NA	NA
WP_013123512.1|2062265_2062895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013123513.1|2063395_2063671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155816268.1|2063759_2066513_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_013123516.1|2067085_2068291_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	45.2	9.2e-83
2071668:2071683	attR	GGTGGTGCGCACCACC	NA	NA	NA	NA
>prophage 3
NC_014153	Thiomonas intermedia K12, complete genome	3396378	3299965	3306948	3396378		Acinetobacter_phage(50.0%)	7	NA	NA
WP_141130661.1|3299965_3300511_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	31.4	1.1e-11
WP_013107511.1|3300539_3300923_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_013124520.1|3301191_3302382_-	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	27.5	2.6e-13
WP_041608782.1|3302912_3303692_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	50.2	4.4e-54
WP_013124522.1|3303781_3304828_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	45.1	2.7e-78
WP_013107514.1|3304814_3305405_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	59.5	6.5e-66
WP_013124523.1|3305448_3306948_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.5	4.1e-40
