assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000092905.1_ASM9290v1	NC_014098	Kyrpidia tusciae DSM 2912, complete sequence	1	2703853-2705077	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csb2gr5,cas7,cas8u1,cas3,WYL	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	Unclear	CCTTCAACGGGGCCGCGGGGTGAACCCGCGGAGTCAC,CCTTCAACGGGGCCGCGGGGTGAACCCGCGGAGTCAC,CCTTCAACGGGGCCGCGGGGTGAACCCGCGGAGTCAC	37,37,37	0	0	NA	NA	NA:NA:NA	16,16,16	16	Unclear	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	NA|118aa|up_9|NC_014098.1_2693416_2693770_+,NA|71aa|up_6|NC_014098.1_2697680_2697893_-,NA|192aa|down_6|NC_014098.1_2716989_2717565_+	NA|118aa|up_9|NC_014098.1_2693416_2693770_+	NA	NA|793aa|up_8|NC_014098.1_2693995_2696374_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|334aa|up_7|NC_014098.1_2696641_2697643_-	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|71aa|up_6|NC_014098.1_2697680_2697893_-	NA	NA|126aa|up_5|NC_014098.1_2698226_2698604_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|287aa|up_4|NC_014098.1_2698604_2699465_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	cas2|125aa|up_3|NC_014098.1_2699974_2700349_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|145aa|up_2|NC_014098.1_2700656_2701091_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	cas2|97aa|up_1|NC_014098.1_2701494_2701785_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|377aa|up_0|NC_014098.1_2701797_2702928_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	csb2gr5|540aa|down_0|NC_014098.1_2705442_2707062_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|317aa|down_1|NC_014098.1_2707076_2708027_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas8u1|743aa|down_2|NC_014098.1_2708093_2710322_-	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc	cas3|875aa|down_3|NC_014098.1_2710318_2712943_-	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain	WYL|223aa|down_4|NC_014098.1_2712981_2713650_-	pfam13280, WYL, WYL domain	NA|255aa|down_5|NC_014098.1_2715970_2716735_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|192aa|down_6|NC_014098.1_2716989_2717565_+	NA	NA|437aa|down_7|NC_014098.1_2717566_2718877_+	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|133aa|down_8|NC_014098.1_2719112_2719511_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_9|NC_014098.1_2719507_2720206_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_000092905.1_ASM9290v1	NC_014098	Kyrpidia tusciae DSM 2912, complete sequence	2	2714103-2715039	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csb2gr5,cas7,cas8u1,cas3,WYL	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	Unclear	CCTTCAACGGGGCCGCGGGTTCAACCCGCGGAGCTGCG,CCTTCAACGGGGCCGCGGGTTCAACCCGCGGAGCT,CTTCAACGGGGCCGCGGGTTCAACCCGCGGAGCT	38,35,34	0	0	NA	NA	NA:NA:NA	12,12,11	12	Unclear	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	NA,NA|192aa|down_1|NC_014098.1_2716989_2717565_+	NA|287aa|up_9|NC_014098.1_2698604_2699465_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	cas2|125aa|up_8|NC_014098.1_2699974_2700349_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|145aa|up_7|NC_014098.1_2700656_2701091_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	cas2|97aa|up_6|NC_014098.1_2701494_2701785_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|377aa|up_5|NC_014098.1_2701797_2702928_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	csb2gr5|540aa|up_4|NC_014098.1_2705442_2707062_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|317aa|up_3|NC_014098.1_2707076_2708027_-	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053)	cas8u1|743aa|up_2|NC_014098.1_2708093_2710322_-	TIGR04113, hypothetical_protein_AaLAA1DRAFT_1703, CRISPR-associated protein Csx17, subtype Dpsyc	cas3|875aa|up_1|NC_014098.1_2710318_2712943_-	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain	WYL|223aa|up_0|NC_014098.1_2712981_2713650_-	pfam13280, WYL, WYL domain	NA|255aa|down_0|NC_014098.1_2715970_2716735_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|192aa|down_1|NC_014098.1_2716989_2717565_+	NA	NA|437aa|down_2|NC_014098.1_2717566_2718877_+	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|133aa|down_3|NC_014098.1_2719112_2719511_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_4|NC_014098.1_2719507_2720206_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|252aa|down_5|NC_014098.1_2720219_2720975_+	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|112aa|down_6|NC_014098.1_2721517_2721853_-	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|87aa|down_7|NC_014098.1_2721852_2722113_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|64aa|down_8|NC_014098.1_2722262_2722454_-	pfam06859, Bin3, Bicoid-interacting protein 3 (Bin3)	NA|313aa|down_9|NC_014098.1_2722786_2723725_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
GCF_000092905.1_ASM9290v1	NC_014098	Kyrpidia tusciae DSM 2912, complete sequence	3	2750070-2768077	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas7b,cas8b1,csx1,cas2,cas1,cas4	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	Type I-B	GTTTCCATTCCTCATAGGCACGCTACGAAC,GTTTCCATTCCTCATAGGCACGCTACGAAC,GTTTCCATTCCTCATAGGCACGCTACGAAC	30,30,30	0	0	NA	NA	NA:NA:NA	265,265,265	265	TypeI-B	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	NA|85aa|up_8|NC_014098.1_2738900_2739155_+,NA|112aa|up_7|NC_014098.1_2739215_2739551_-,NA	NA|465aa|up_9|NC_014098.1_2737011_2738406_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|85aa|up_8|NC_014098.1_2738900_2739155_+	NA	NA|112aa|up_7|NC_014098.1_2739215_2739551_-	NA	cas3|854aa|up_6|NC_014098.1_2740061_2742623_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|252aa|up_5|NC_014098.1_2742632_2743388_-	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7b|363aa|up_4|NC_014098.1_2743384_2744473_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|699aa|up_3|NC_014098.1_2744465_2746562_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	NA|247aa|up_2|NC_014098.1_2747055_2747796_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|99aa|up_1|NC_014098.1_2747937_2748234_-	pfam03795, YCII, YCII-related domain	csx1|432aa|up_0|NC_014098.1_2748616_2749912_+	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	NA|412aa|down_0|NC_014098.1_2768764_2770000_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|88aa|down_1|NC_014098.1_2779064_2779328_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|332aa|down_2|NC_014098.1_2779520_2780516_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|168aa|down_3|NC_014098.1_2780533_2781037_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|807aa|down_4|NC_014098.1_2781076_2783497_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|235aa|down_5|NC_014098.1_2783490_2784195_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|326aa|down_6|NC_014098.1_2784210_2785188_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|701aa|down_7|NC_014098.1_2785266_2787369_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|274aa|down_8|NC_014098.1_2787337_2788159_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|246aa|down_9|NC_014098.1_2788541_2789279_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional
GCF_000092905.1_ASM9290v1	NC_014098	Kyrpidia tusciae DSM 2912, complete sequence	4	2770187-2778650	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	Type I-B	GTTTCCATTCCTCATAGGCACGCTACGAAC,GTTTCCATTCCTCATAGGCACGCTACGAAC,GTTTCCATTCCTCATAGGCACGCTACGAAC	30,30,30	1	1	2778187-2778220	NC_014098.1_2941861-2941894	NA:NA:NA	125,125,125	125	TypeI-B	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	NA|85aa|up_9|NC_014098.1_2738900_2739155_+,NA|112aa|up_8|NC_014098.1_2739215_2739551_-,NA	NA|85aa|up_9|NC_014098.1_2738900_2739155_+	NA	NA|112aa|up_8|NC_014098.1_2739215_2739551_-	NA	cas3|854aa|up_7|NC_014098.1_2740061_2742623_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|252aa|up_6|NC_014098.1_2742632_2743388_-	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7b|363aa|up_5|NC_014098.1_2743384_2744473_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|699aa|up_4|NC_014098.1_2744465_2746562_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	NA|247aa|up_3|NC_014098.1_2747055_2747796_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|99aa|up_2|NC_014098.1_2747937_2748234_-	pfam03795, YCII, YCII-related domain	csx1|432aa|up_1|NC_014098.1_2748616_2749912_+	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	NA|412aa|up_0|NC_014098.1_2768764_2770000_+	pfam01548, DEDD_Tnp_IS110, Transposase	cas2|88aa|down_0|NC_014098.1_2779064_2779328_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|332aa|down_1|NC_014098.1_2779520_2780516_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|168aa|down_2|NC_014098.1_2780533_2781037_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|807aa|down_3|NC_014098.1_2781076_2783497_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|235aa|down_4|NC_014098.1_2783490_2784195_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|326aa|down_5|NC_014098.1_2784210_2785188_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|701aa|down_6|NC_014098.1_2785266_2787369_-	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas6|274aa|down_7|NC_014098.1_2787337_2788159_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|246aa|down_8|NC_014098.1_2788541_2789279_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|155aa|down_9|NC_014098.1_2789599_2790064_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]
GCF_000092905.1_ASM9290v1	NC_014098	Kyrpidia tusciae DSM 2912, complete sequence	5	3257679-3257777	5	CRISPRCasFinder	no	cas14k,Cas14u_CAS-V	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	Unclear	GGTCTGGACTGAACTATAACAAACGCGGAT	30	0	0	NA	NA	NA	1	1	TypeV	cas3,csa3,WYL,Cas14u_CAS-V,DEDDh,cas14k,cas14j,Cas14b_CAS-V-F,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,c2c9_V-U4,cas4,csm3gr7,csx19,csx10gr5,cas2,cas1,csb2gr5,cas7,cas8u1,cas5,cas7b,cas8b1,cas6,csx20	NA|72aa|up_6|NC_014098.1_3253135_3253351_-,NA|109aa|up_1|NC_014098.1_3256321_3256648_+,NA	NA|88aa|up_9|NC_014098.1_3248642_3248906_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|434aa|up_8|NC_014098.1_3249693_3250995_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|434aa|up_7|NC_014098.1_3251395_3252697_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|72aa|up_6|NC_014098.1_3253135_3253351_-	NA	NA|82aa|up_5|NC_014098.1_3253311_3253557_-	COG1569, COG1569, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|80aa|up_4|NC_014098.1_3253605_3253845_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|241aa|up_3|NC_014098.1_3253999_3254722_+	COG2452, COG2452, Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]	cas14k|458aa|up_2|NC_014098.1_3254741_3256115_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|109aa|up_1|NC_014098.1_3256321_3256648_+	NA	NA|76aa|up_0|NC_014098.1_3257114_3257342_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	Cas14u_CAS-V|464aa|down_0|NC_014098.1_3258053_3259445_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|185aa|down_1|NC_014098.1_3259414_3259969_-	pfam01381, HTH_3, Helix-turn-helix	NA|81aa|down_2|NC_014098.1_3260116_3260359_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|131aa|down_3|NC_014098.1_3260355_3260748_+	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|175aa|down_4|NC_014098.1_3261526_3262051_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|89aa|down_5|NC_014098.1_3262284_3262551_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|84aa|down_6|NC_014098.1_3263018_3263270_+	TIGR01552, Hypothetical_protein_Rv3357/MT3465/Mb3392	NA|146aa|down_7|NC_014098.1_3263266_3263704_+	cd18746, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|46aa|down_8|NC_014098.1_3264252_3264390_+	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)	NA|237aa|down_9|NC_014098.1_3264458_3265169_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]
