The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_013446	Comamonas thiooxydans, complete sequence	5373644	1666325	1708020	5373644	integrase,transposase	Stenotrophomonas_phage(28.57%)	36	1687623:1687639	1705793:1705809
WP_012837638.1|1666325_1667576_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	44.1	2.8e-90
WP_123974922.1|1669308_1669491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019043395.1|1669668_1669806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012837641.1|1670058_1670709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012837642.1|1671014_1672139_-	porin	NA	NA	NA	NA	NA
WP_122974738.1|1672262_1672577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012837644.1|1672589_1673564_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_034358988.1|1673906_1674659_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.7	3.7e-21
WP_012837647.1|1675768_1676263_-	hemerythrin	NA	NA	NA	NA	NA
WP_012837648.1|1676328_1677291_-	oxidoreductase	NA	NA	NA	NA	NA
WP_012837649.1|1677568_1678912_+	MFS transporter	NA	NA	NA	NA	NA
WP_012837650.1|1678955_1679948_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012837651.1|1680238_1680832_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029158425.1|1680893_1682069_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_012837653.1|1682088_1683420_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_012837654.1|1684362_1685901_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	36.7	1.1e-45
WP_050881040.1|1686199_1687222_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
1687623:1687639	attL	GCTCTTGCGCGTAGTTC	NA	NA	NA	NA
WP_012837656.1|1687692_1688460_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012837657.1|1688569_1689538_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_012837658.1|1689553_1690795_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_012837659.1|1690791_1691256_+	Terephthalate 1 2-dioxygenase terminal oxygenase component subunit beta 1	NA	NA	NA	NA	NA
WP_034410981.1|1691252_1692200_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_012837661.1|1692209_1693220_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A1D8KRZ3	Synechococcus_phage	36.4	1.2e-06
WP_012837662.1|1693240_1693819_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_123974928.1|1695004_1695748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080571293.1|1695828_1696152_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012837667.1|1696270_1697344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012837668.1|1697429_1698467_-	YqaJ viral recombinase family protein	NA	A6XMH8	Bacillus_virus	40.3	3.8e-53
WP_012837669.1|1698602_1699586_-	DUF932 domain-containing protein	NA	A0A0H4INH5	Stenotrophomonas_phage	40.3	7.8e-56
WP_080571292.1|1699797_1700163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034358079.1|1700827_1701070_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_080692911.1|1701223_1702441_+	inovirus-type Gp2 protein	NA	NA	NA	NA	NA
WP_012837672.1|1702437_1703808_+	DUF3987 domain-containing protein	NA	NA	NA	NA	NA
WP_012837673.1|1703981_1704902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041743983.1|1705670_1705856_+	hypothetical protein	NA	NA	NA	NA	NA
1705793:1705809	attR	GAACTACGCGCAAGAGC	NA	NA	NA	NA
WP_013521161.1|1707693_1708020_+|transposase	transposase	transposase	Q6H9S4	Enterobacteria_phage	63.1	2.1e-26
>prophage 2
NC_013446	Comamonas thiooxydans, complete sequence	5373644	2189416	2249233	5373644	integrase,transposase	Lactococcus_phage(28.57%)	49	2246657:2246674	2252023:2252040
WP_012838037.1|2189416_2190040_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WF93	Clostridium_phage	33.7	7.5e-12
WP_012838594.1|2190801_2191587_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	33.6	1.4e-31
WP_012838039.1|2191576_2193103_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_167332953.1|2193479_2193854_-	helix-turn-helix domain-containing protein	NA	E5E3P4	Burkholderia_phage	40.2	2.6e-12
WP_167332954.1|2194388_2195546_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_012838042.1|2195542_2197159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012838043.1|2197151_2199023_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_012838044.1|2199000_2199441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003062966.1|2199530_2200025_+	DUF2721 domain-containing protein	NA	NA	NA	NA	NA
WP_012838045.1|2200039_2200369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012838046.1|2200370_2201291_-	HTH-type transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_012838047.1|2201382_2202033_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003062961.1|2202091_2202400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838048.1|2202564_2203041_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_041744049.1|2203129_2204029_+	EamA family transporter	NA	NA	NA	NA	NA
WP_003062956.1|2204493_2206416_+	PrkA family serine protein kinase	NA	NA	NA	NA	NA
WP_012838050.1|2206492_2207761_+	YeaH/YhbH family protein	NA	A0A219UQP6	Bacillus_phage	36.0	1.0e-07
WP_003062951.1|2207757_2209392_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003055852.1|2209634_2210420_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012838051.1|2210587_2210827_+	DUF3820 family protein	NA	NA	NA	NA	NA
WP_012838052.1|2211053_2212883_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	36.2	1.9e-18
WP_041744050.1|2213278_2213785_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_012838054.1|2213790_2214744_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_041744504.1|2214853_2217295_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_012838056.1|2217533_2218901_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_041744051.1|2219019_2221422_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_041744052.1|2221586_2221877_+	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_041744053.1|2221879_2223550_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_012838060.1|2223546_2223891_+	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
WP_041744054.1|2224233_2224755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838062.1|2225069_2225627_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003070298.1|2225770_2226484_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_041744055.1|2226640_2227663_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_012838064.1|2227830_2228502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838065.1|2228592_2232084_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_123974964.1|2232330_2233128_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_041744056.1|2233250_2233733_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_012838068.1|2233767_2234163_-	GFA family protein	NA	NA	NA	NA	NA
WP_012838069.1|2234223_2235726_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003055820.1|2235914_2236646_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	37.9	2.5e-30
WP_041744057.1|2236959_2237709_+	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_039048727.1|2237853_2238636_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_012838072.1|2238712_2239729_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003070275.1|2239725_2241957_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_012838073.1|2242781_2244308_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_012838594.1|2244297_2245083_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	33.6	1.4e-31
WP_012838074.1|2245590_2246064_-	hypothetical protein	NA	NA	NA	NA	NA
2246657:2246674	attL	CAGCAACCGCTGCAAAGC	NA	NA	NA	NA
WP_012838075.1|2247044_2247662_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_012838076.1|2247658_2249233_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2252023:2252040	attR	GCTTTGCAGCGGTTGCTG	NA	NA	NA	NA
>prophage 3
NC_013446	Comamonas thiooxydans, complete sequence	5373644	2776505	2851855	5373644	integrase,transposase	Moraxella_phage(20.0%)	53	2780069:2780083	2785847:2785861
WP_123974978.1|2776505_2777219_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_012838474.1|2777488_2778100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012836612.1|2778892_2779825_+|transposase	IS5-like element ISAav2 family transposase	transposase	NA	NA	NA	NA
WP_012838475.1|2779827_2780895_-	hypothetical protein	NA	NA	NA	NA	NA
2780069:2780083	attL	TCAGCGACAGTCGCA	NA	NA	NA	NA
WP_012838476.1|2782363_2782825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012838477.1|2783584_2784082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123974980.1|2784160_2784541_-	hypothetical protein	NA	A0A0S2SY43	Pseudomonas_phage	38.5	4.9e-06
WP_012838479.1|2784724_2785726_+|integrase	integron integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	43.9	6.9e-68
WP_012838480.1|2786250_2787039_-	recombination protein NinG	NA	NA	NA	NA	NA
2785847:2785861	attR	TGCGACTGTCGCTGA	NA	NA	NA	NA
WP_012838481.1|2787301_2788552_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_041744136.1|2789114_2789321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838482.1|2789448_2789850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167332982.1|2789851_2792155_-	hemagglutinin repeat-containing protein	NA	NA	NA	NA	NA
WP_012838484.1|2793284_2801174_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	32.6	2.0e-40
WP_041744138.1|2801183_2802905_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	A0A0R6PI85	Moraxella_phage	28.0	3.7e-37
WP_012838486.1|2803612_2804149_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_003064031.1|2804863_2805082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838487.1|2805366_2805549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012838488.1|2805751_2806504_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	4.6e-08
WP_123974982.1|2806678_2806858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838489.1|2807337_2807646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039051208.1|2809120_2809372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012838491.1|2809619_2810357_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_041744139.1|2810349_2810586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167332958.1|2810672_2811302_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012838493.1|2811414_2812932_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_080692998.1|2812943_2814917_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	31.5	7.6e-10
WP_034398669.1|2815220_2815580_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_051517661.1|2815847_2816348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838594.1|2816452_2817238_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	33.6	1.4e-31
WP_012838496.1|2817227_2818754_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_012838500.1|2820797_2821217_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_185950045.1|2821403_2824331_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	1.1e-148
WP_041744141.1|2824320_2824827_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_003055168.1|2824914_2825718_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_041744142.1|2825948_2827898_+	cytochrome c/FTR1 family iron permease	NA	NA	NA	NA	NA
WP_115597153.1|2828247_2828463_-	copper-binding protein	NA	NA	NA	NA	NA
WP_080692934.1|2828781_2830425_-	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_003079124.1|2830616_2830964_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003055034.1|2831164_2834338_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA	NA
WP_034349613.1|2834351_2835701_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_012838505.1|2835723_2837001_-	TolC family protein	NA	NA	NA	NA	NA
WP_003062499.1|2837176_2837869_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.6	1.9e-32
WP_003062497.1|2837865_2839260_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_087083413.1|2839463_2841002_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	37.2	9.4e-48
WP_012838508.1|2844015_2844417_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003069798.1|2844385_2845120_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003069800.1|2845268_2845652_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_080554244.1|2845834_2846107_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_003075108.1|2848468_2848915_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003075109.1|2848981_2849383_-	CzcE family metal-binding protein	NA	NA	NA	NA	NA
WP_012838511.1|2850396_2851395_+	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_012838512.1|2851354_2851855_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_013446	Comamonas thiooxydans, complete sequence	5373644	2868696	2881851	5373644	transposase	uncultured_Caudovirales_phage(62.5%)	9	NA	NA
WP_012838524.1|2868696_2871162_+	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.5	5.3e-85
WP_012839066.1|2871285_2871609_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012838526.1|2871655_2872162_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	41.2	4.0e-24
WP_012838527.1|2872284_2873574_+	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	76.8	2.7e-173
WP_012838528.1|2873599_2874031_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	75.0	5.4e-54
WP_011518937.1|2875551_2876415_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	44.1	1.9e-61
WP_011518938.1|2876429_2877908_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	77.0	2.8e-206
WP_003124096.1|2878321_2878882_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	88.6	2.1e-50
WP_001138070.1|2878884_2881851_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.9	0.0e+00
>prophage 5
NC_013446	Comamonas thiooxydans, complete sequence	5373644	3016721	3034475	5373644		EBPR_podovirus(33.33%)	8	NA	NA
WP_123975110.1|3016721_3018347_-	hypothetical protein	NA	I6NV36	Burkholderia_virus	42.5	6.8e-81
WP_080692946.1|3018964_3020377_-	hypothetical protein	NA	F8TUP1	EBPR_podovirus	62.4	1.3e-99
WP_012838658.1|3020328_3020898_-	hypothetical protein	NA	F8TUP1	EBPR_podovirus	43.8	4.3e-30
WP_051517670.1|3020887_3021550_-	hypothetical protein	NA	L7TIB4	Pseudomonas_virus	42.9	1.5e-10
WP_167332960.1|3022207_3022555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012838662.1|3022629_3023235_-	glycoside hydrolase family protein	NA	F8UBR8	Escherichia_phage	37.0	1.2e-11
WP_012838663.1|3023237_3023540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012838664.1|3023690_3034475_-	PLxRFG domain-containing protein	NA	L7TID4	Pseudomonas_virus	41.5	0.0e+00
>prophage 6
NC_013446	Comamonas thiooxydans, complete sequence	5373644	3150963	3156520	5373644		Enterobacteria_phage(33.33%)	6	NA	NA
WP_041744187.1|3150963_3151830_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.3	1.6e-68
WP_041744188.1|3151862_3153035_-	nucleotide sugar dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	54.0	2.4e-112
WP_012838751.1|3153039_3153597_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.2	6.2e-50
WP_012838752.1|3153593_3154484_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	60.3	1.2e-100
WP_012838753.1|3154547_3155453_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	32.6	3.0e-22
WP_012838754.1|3155449_3156520_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	48.8	8.4e-88
>prophage 7
NC_013446	Comamonas thiooxydans, complete sequence	5373644	4015275	4028301	5373644	tail	uncultured_Caudovirales_phage(25.0%)	13	NA	NA
WP_185950025.1|4015275_4015689_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A2H4J538	uncultured_Caudovirales_phage	46.9	3.8e-28
WP_012839379.1|4015695_4016994_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	43.6	6.8e-92
WP_012839380.1|4017006_4018008_-	DUF4238 domain-containing protein	NA	NA	NA	NA	NA
WP_167332968.1|4018221_4018461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012839382.1|4018656_4019127_-	lysozyme	NA	A0A0U4JP67	Pseudomonas_phage	53.1	7.6e-33
WP_012839383.1|4019123_4019420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012839384.1|4019480_4020227_-	LamG domain-containing protein	NA	Q5DN17	Alphaproteobacteria_virus	35.6	4.1e-25
WP_012839385.1|4020223_4020973_-	hypothetical protein	NA	F5B3P3	Synechococcus_phage	56.9	2.6e-19
WP_012839386.1|4020969_4023687_-	hypothetical protein	NA	A0A1W6DWX7	Sphingobium_phage	34.3	7.8e-21
WP_012839387.1|4023689_4024112_-	C40 family peptidase	NA	NA	NA	NA	NA
WP_012839388.1|4024108_4024993_-	DUF2163 domain-containing protein	NA	A0A0B5A5B8	Paracoccus_phage	38.4	2.2e-41
WP_012839389.1|4024989_4025595_-	DUF2460 domain-containing protein	NA	NA	NA	NA	NA
WP_051517689.1|4025598_4028301_-|tail	phage tail tape measure protein	tail	A0A2H4J9A1	uncultured_Caudovirales_phage	34.7	2.7e-90
