assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000093185.1_ASM9318v1	NC_017355	Helicobacter pylori v225d, complete sequence	1	334603-334712	1	CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	GAGAGGCTCTCTAGCGTTACTGAAGA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,csx1,DEDDh	NA|113aa|up_0|NC_017355.1_333884_334223_+,NA|89aa|down_0|NC_017355.1_335181_335448_+,NA|262aa|down_1|NC_017355.1_336150_336936_+,NA|396aa|down_2|NC_017355.1_336925_338113_+	NA|298aa|up_9|NC_017355.1_326299_327193_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NC_017355.1_327189_327732_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NC_017355.1_327664_328603_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NC_017355.1_328599_329382_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NC_017355.1_329629_330622_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NC_017355.1_330645_331452_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NC_017355.1_331448_331682_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_2|NC_017355.1_331693_332494_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NC_017355.1_332490_332895_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|113aa|up_0|NC_017355.1_333884_334223_+	NA	NA|89aa|down_0|NC_017355.1_335181_335448_+	NA	NA|262aa|down_1|NC_017355.1_336150_336936_+	NA	NA|396aa|down_2|NC_017355.1_336925_338113_+	NA	NA|294aa|down_3|NC_017355.1_338157_339039_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_4|NC_017355.1_339038_340589_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_5|NC_017355.1_340597_342214_-	PRK05380, pyrG, CTP synthetase; Validated	NA|221aa|down_6|NC_017355.1_342473_343136_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_7|NC_017355.1_343179_344883_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_8|NC_017355.1_344901_345933_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|259aa|down_9|NC_017355.1_345919_346696_+	PRK06669, fliH, flagellar assembly protein H; Validated
GCF_000093185.1_ASM9318v1	NC_017355	Helicobacter pylori v225d, complete sequence	2	532930-533034	2	CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	ATCAGATAGCTCTGAACCCATTTACGCTAC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,csx1,DEDDh	NA|307aa|up_9|NC_017355.1_520121_521042_+,NA|236aa|up_8|NC_017355.1_521124_521832_-,NA|380aa|up_7|NC_017355.1_521828_522968_-,NA|371aa|up_6|NC_017355.1_522978_524091_-,NA|144aa|up_5|NC_017355.1_524092_524524_-,NA|269aa|up_4|NC_017355.1_524578_525385_-,NA|76aa|up_0|NC_017355.1_529486_529714_-,NA|72aa|down_0|NC_017355.1_533828_534044_+,NA|325aa|down_6|NC_017355.1_538218_539193_+,NA|274aa|down_7|NC_017355.1_539189_540011_+,NA|62aa|down_8|NC_017355.1_540439_540625_+	NA|307aa|up_9|NC_017355.1_520121_521042_+	NA	NA|236aa|up_8|NC_017355.1_521124_521832_-	NA	NA|380aa|up_7|NC_017355.1_521828_522968_-	NA	NA|371aa|up_6|NC_017355.1_522978_524091_-	NA	NA|144aa|up_5|NC_017355.1_524092_524524_-	NA	NA|269aa|up_4|NC_017355.1_524578_525385_-	NA	NA|984aa|up_3|NC_017355.1_525386_528338_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|208aa|up_2|NC_017355.1_528346_528970_-	pfam16567, CagD, Pathogenicity island component CagD	NA|116aa|up_1|NC_017355.1_528971_529319_-	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system	NA|76aa|up_0|NC_017355.1_529486_529714_-	NA	NA|72aa|down_0|NC_017355.1_533828_534044_+	NA	NA|256aa|down_1|NC_017355.1_534033_534801_-	TIGR00067, Glutamate_racemase, glutamate racemase	NA|439aa|down_2|NC_017355.1_534837_536154_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|68aa|down_3|NC_017355.1_536418_536622_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|288aa|down_4|NC_017355.1_536646_537510_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|228aa|down_5|NC_017355.1_537522_538206_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|325aa|down_6|NC_017355.1_538218_539193_+	NA	NA|274aa|down_7|NC_017355.1_539189_540011_+	NA	NA|62aa|down_8|NC_017355.1_540439_540625_+	NA	NA|313aa|down_9|NC_017355.1_540676_541615_-	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
GCF_000093185.1_ASM9318v1	NC_017355	Helicobacter pylori v225d, complete sequence	3	1108046-1108131	3	CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	CATGCGAGAAGTAGTGGTTCAAGAAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,csx1,DEDDh	NA|517aa|up_8|NC_017355.1_1098223_1099774_+,NA|436aa|down_0|NC_017355.1_1109359_1110667_+	NA|345aa|up_9|NC_017355.1_1096661_1097696_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|517aa|up_8|NC_017355.1_1098223_1099774_+	NA	NA|73aa|up_7|NC_017355.1_1099814_1100033_-	sd00010, SLR, Sel1-like repeat	NA|291aa|up_6|NC_017355.1_1100216_1101089_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NC_017355.1_1101158_1101785_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NC_017355.1_1101803_1103630_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NC_017355.1_1103697_1104975_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NC_017355.1_1104985_1105669_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NC_017355.1_1105655_1106666_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NC_017355.1_1106826_1107873_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NC_017355.1_1109359_1110667_+	NA	NA|224aa|down_1|NC_017355.1_1110673_1111345_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NC_017355.1_1111633_1112194_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NC_017355.1_1112209_1112602_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NC_017355.1_1112611_1113835_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NC_017355.1_1113847_1114792_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NC_017355.1_1114901_1116224_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NC_017355.1_1116293_1117127_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NC_017355.1_1117137_1119114_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|342aa|down_9|NC_017355.1_1119284_1120310_-	pfam12033, DUF3519, Protein of unknown function (DUF3519)
